Wall clock time and date at job start Wed Apr 1 2020 04:51:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47288 * 2 1 4 4 C 1.50704 * 109.47049 * 119.99839 * 2 1 3 5 5 H 1.08003 * 119.99706 * 119.99684 * 4 2 1 6 6 C 1.37875 * 119.99974 * 300.00373 * 4 2 1 7 7 N 1.31515 * 119.99909 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99975 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47032 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.47284 * 119.99857 * 8 6 4 11 11 H 1.48501 * 109.46839 * 239.99637 * 8 6 4 12 12 N 1.46900 * 109.47248 * 239.99784 * 2 1 3 13 13 C 1.46903 * 110.99834 * 306.05136 * 12 2 1 14 14 C 1.46898 * 111.00023 * 69.99844 * 12 2 1 15 15 C 1.50704 * 109.47152 * 170.00006 * 14 12 2 16 16 O 1.21286 * 119.99969 * 0.02562 * 15 14 12 17 17 N 1.34779 * 119.99844 * 180.02562 * 15 14 12 18 18 C 1.40150 * 119.99851 * 184.62306 * 17 15 14 19 19 C 1.38852 * 119.99400 * 324.90886 * 18 17 15 20 20 C 1.38068 * 120.00115 * 179.97438 * 19 18 17 21 21 C 1.38885 * 119.99817 * 359.97438 * 20 19 18 22 22 N 1.39890 * 120.00722 * 179.97438 * 21 20 19 23 23 C 1.47009 * 111.00025 * 180.02562 * 22 21 20 24 24 C 1.53104 * 109.25702 * 177.60712 * 23 22 21 25 25 O 1.43013 * 109.25596 * 56.84906 * 24 23 22 26 26 C 1.43014 * 113.73956 * 301.32746 * 25 24 23 27 27 C 1.47007 * 110.99951 * 56.36628 * 22 21 20 28 28 C 1.38898 * 119.98855 * 0.25842 * 21 20 19 29 29 C 1.38061 * 119.99515 * 359.48700 * 28 21 20 30 30 H 1.09008 * 109.46906 * 60.00365 * 1 2 3 31 31 H 1.08999 * 109.47288 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.47406 * 300.00417 * 1 2 3 33 33 H 0.97003 * 120.00076 * 180.02562 * 7 6 4 34 34 H 1.09004 * 109.46818 * 183.95638 * 13 12 2 35 35 H 1.09000 * 109.46814 * 303.94671 * 13 12 2 36 36 H 1.08991 * 109.47860 * 63.95336 * 13 12 2 37 37 H 1.09003 * 109.46996 * 50.00098 * 14 12 2 38 38 H 1.09000 * 109.47265 * 290.00206 * 14 12 2 39 39 H 0.97005 * 120.00056 * 4.62443 * 17 15 14 40 40 H 1.07993 * 119.99996 * 359.95862 * 19 18 17 41 41 H 1.08002 * 119.99557 * 180.02562 * 20 19 18 42 42 H 1.09004 * 109.51048 * 57.67406 * 23 22 21 43 43 H 1.08997 * 109.51076 * 297.54233 * 23 22 21 44 44 H 1.08996 * 109.50446 * 176.78693 * 24 23 22 45 45 H 1.09002 * 109.50473 * 296.87292 * 24 23 22 46 46 H 1.09003 * 109.51096 * 178.60690 * 26 25 24 47 47 H 1.09001 * 109.51098 * 298.73787 * 26 25 24 48 48 H 1.09000 * 109.50826 * 62.45465 * 27 22 21 49 49 H 1.09001 * 109.50690 * 302.32981 * 27 22 21 50 50 H 1.08004 * 119.99748 * 179.74282 * 28 21 20 51 51 H 1.08001 * 119.99841 * 180.27200 * 29 28 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9434 0.8302 2.6033 8 14 2.3224 -1.1195 4.0080 9 1 3.1474 -2.2862 3.6038 10 1 3.1471 -0.1857 4.8161 11 1 1.1677 -1.5865 4.8165 12 7 2.0197 -0.6925 -1.1994 13 6 1.4342 -2.0355 -1.3078 14 6 1.7529 0.0971 -2.4090 15 6 2.4775 -0.5164 -3.5794 16 8 3.1495 -1.5137 -3.4215 17 7 2.3786 0.0430 -4.8016 18 6 2.9719 -0.5804 -5.9077 19 6 4.1732 -1.2609 -5.7593 20 6 4.7575 -1.8756 -6.8488 21 6 4.1435 -1.8138 -8.0930 22 7 4.7357 -2.4361 -9.1971 23 6 3.9229 -2.2467 -10.4073 24 6 4.6353 -2.8905 -11.5999 25 8 4.8726 -4.2722 -11.3177 26 6 5.6618 -4.4933 -10.1458 27 6 4.9604 -3.8656 -8.9383 28 6 2.9444 -1.1289 -8.2422 29 6 2.3577 -0.5188 -7.1514 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 0.7093 1.1618 3.4843 34 1 1.8664 -2.5521 -2.1648 35 1 1.6466 -2.5988 -0.3991 36 1 0.3556 -1.9521 -1.4399 37 1 2.1025 1.1188 -2.2604 38 1 0.6814 0.1052 -2.6087 39 1 1.8968 0.8772 -4.9156 40 1 4.6505 -1.3092 -4.7918 41 1 5.6916 -2.4052 -6.7332 42 1 3.7910 -1.1809 -10.5942 43 1 2.9488 -2.7158 -10.2687 44 1 4.0098 -2.8025 -12.4882 45 1 5.5855 -2.3851 -11.7723 46 1 5.7789 -5.5646 -9.9824 47 1 6.6423 -4.0350 -10.2754 48 1 4.0031 -4.3610 -8.7758 49 1 5.5856 -3.9814 -8.0530 50 1 2.4689 -1.0772 -9.2105 51 1 1.4231 0.0100 -7.2665 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000053602994.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:28 Heat of formation + Delta-G solvation = -16.546129 kcal Electronic energy + Delta-G solvation = -30205.314179 eV Core-core repulsion = 26105.749905 eV Total energy + Delta-G solvation = -4099.564274 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.91222 -40.05190 -38.51812 -36.90149 -35.91974 -34.00257 -32.71437 -32.11241 -30.81494 -29.98505 -28.93990 -27.57390 -26.26910 -25.23954 -24.97946 -24.02246 -22.64867 -22.05877 -20.97465 -20.11461 -19.27242 -18.13978 -17.37007 -17.00585 -16.53173 -16.04135 -15.81009 -15.69354 -15.41361 -15.37318 -15.01921 -14.77315 -14.36435 -14.18177 -14.12267 -13.89160 -13.67796 -13.25358 -12.84366 -12.68983 -12.64281 -12.58453 -12.38245 -12.09113 -11.84868 -11.62900 -11.43177 -11.08321 -11.07347 -10.96376 -10.82207 -10.72174 -10.57358 -10.45520 -10.09375 -10.06933 -9.99688 -9.42221 -9.31851 -9.02138 -8.87604 -8.40037 -7.69118 -7.19299 -6.02614 -4.05263 1.14855 1.27747 2.80350 3.06531 3.25882 3.30691 3.38601 3.42050 3.44793 3.71979 4.36852 4.41950 4.43962 4.54363 4.66765 4.77610 4.80070 4.82760 4.97346 5.04198 5.07632 5.15568 5.23308 5.27385 5.30031 5.32693 5.35977 5.47562 5.51812 5.70466 5.77350 5.81408 5.90383 5.98410 6.26571 6.34129 6.39549 6.43578 6.58222 6.64444 6.65966 6.74461 6.77983 6.95778 7.05067 7.08592 7.33434 7.49376 7.67034 7.83234 8.06801 8.32216 8.38096 8.55115 9.01439 9.59712 11.04799 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.027021 B = 0.001781 C = 0.001711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.985370 B =15716.724789 C =16364.533503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.210 3.790 3 H 0.040 0.960 4 C -0.495 4.495 5 H 0.065 0.935 6 C 0.056 3.944 7 N -0.896 5.896 8 Si 0.898 3.102 9 H -0.272 1.272 10 H -0.285 1.285 11 H -0.286 1.286 12 N -0.516 5.516 13 C 0.030 3.970 14 C 0.038 3.962 15 C 0.514 3.486 16 O -0.499 6.499 17 N -0.683 5.683 18 C 0.134 3.866 19 C -0.096 4.096 20 C -0.117 4.117 21 C 0.083 3.917 22 N -0.486 5.486 23 C 0.013 3.987 24 C 0.063 3.937 25 O -0.385 6.385 26 C 0.062 3.938 27 C 0.018 3.982 28 C -0.150 4.150 29 C -0.124 4.124 30 H 0.005 0.995 31 H 0.033 0.967 32 H 0.090 0.910 33 H 0.259 0.741 34 H 0.061 0.939 35 H 0.073 0.927 36 H 0.011 0.989 37 H 0.099 0.901 38 H 0.057 0.943 39 H 0.408 0.592 40 H 0.145 0.855 41 H 0.126 0.874 42 H 0.093 0.907 43 H 0.055 0.945 44 H 0.101 0.899 45 H 0.061 0.939 46 H 0.102 0.898 47 H 0.062 0.938 48 H 0.053 0.947 49 H 0.094 0.906 50 H 0.127 0.873 51 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.066 -3.279 -27.902 28.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.104 3.896 3 H 0.057 0.943 4 C -0.534 4.534 5 H 0.083 0.917 6 C -0.144 4.144 7 N -0.536 5.536 8 Si 0.726 3.274 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.212 1.212 12 N -0.240 5.240 13 C -0.118 4.118 14 C -0.094 4.094 15 C 0.302 3.698 16 O -0.372 6.372 17 N -0.330 5.330 18 C 0.039 3.961 19 C -0.116 4.116 20 C -0.138 4.138 21 C -0.014 4.014 22 N -0.203 5.203 23 C -0.115 4.115 24 C -0.015 4.015 25 O -0.303 6.303 26 C -0.015 4.015 27 C -0.107 4.107 28 C -0.171 4.171 29 C -0.145 4.145 30 H 0.024 0.976 31 H 0.052 0.948 32 H 0.108 0.892 33 H 0.069 0.931 34 H 0.079 0.921 35 H 0.092 0.908 36 H 0.029 0.971 37 H 0.117 0.883 38 H 0.075 0.925 39 H 0.244 0.756 40 H 0.163 0.837 41 H 0.144 0.856 42 H 0.111 0.889 43 H 0.073 0.927 44 H 0.119 0.881 45 H 0.079 0.921 46 H 0.120 0.880 47 H 0.080 0.920 48 H 0.071 0.929 49 H 0.112 0.888 50 H 0.145 0.855 51 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 5.383 -3.934 -27.741 28.531 hybrid contribution -1.607 0.223 1.065 1.941 sum 3.776 -3.711 -26.676 27.196 Atomic orbital electron populations 1.22430 1.00720 0.99605 1.00481 1.19395 0.89813 0.94506 0.85861 0.94252 1.21130 1.30334 1.12502 0.89390 0.91721 1.24927 0.95267 0.95185 0.99040 1.69887 1.37265 1.23119 1.23322 0.86437 0.78521 0.79711 0.82749 1.19673 1.21074 1.21208 1.62117 1.59095 1.02342 1.00458 1.22375 0.95375 0.91487 1.02600 1.21936 0.97746 0.99162 0.90578 1.21294 0.81175 0.84126 0.83205 1.90638 1.38324 1.24764 1.83437 1.43745 1.56009 1.26665 1.06618 1.17775 0.92920 0.98435 0.86928 1.21273 0.93414 0.97203 0.99741 1.20678 1.00231 1.02078 0.90766 1.18858 0.92879 0.99157 0.90474 1.59451 1.45803 1.12505 1.02516 1.22966 0.95783 1.02421 0.90289 1.22710 1.00204 0.82002 0.96539 1.88004 1.72799 1.24716 1.44822 1.22725 0.93930 1.01095 0.83706 1.22959 1.01483 0.86304 0.99996 1.20995 0.94812 1.02287 0.99037 1.20763 0.99771 1.02296 0.91714 0.97599 0.94818 0.89165 0.93076 0.92073 0.90792 0.97059 0.88314 0.92532 0.75621 0.83717 0.85607 0.88867 0.92720 0.88094 0.92068 0.87970 0.91998 0.92893 0.88751 0.85534 0.85721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.04 8.22 37.16 0.31 -3.74 16 2 C 0.21 5.17 2.31 -68.86 -0.16 5.02 16 3 H 0.04 1.04 7.93 -51.93 -0.41 0.63 16 4 C -0.49 -13.54 7.91 -34.44 -0.27 -13.82 16 5 H 0.06 1.81 7.12 -52.48 -0.37 1.44 16 6 C 0.06 1.55 5.30 -17.82 -0.09 1.45 16 7 N -0.90 -25.14 11.32 55.43 0.63 -24.51 16 8 Si 0.90 21.43 29.54 -169.99 -5.02 16.41 16 9 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 12 N -0.52 -11.20 4.44 -237.73 -1.06 -12.25 16 13 C 0.03 0.62 8.34 60.07 0.50 1.12 16 14 C 0.04 0.64 5.02 -4.97 -0.02 0.61 16 15 C 0.51 8.25 7.40 -10.98 -0.08 8.17 16 16 O -0.50 -9.66 11.75 5.55 0.07 -9.60 16 17 N -0.68 -8.35 5.34 -9.82 -0.05 -8.41 16 18 C 0.13 1.68 6.30 -83.60 -0.53 1.16 16 19 C -0.10 -1.29 8.69 -39.42 -0.34 -1.64 16 20 C -0.12 -1.36 9.20 -39.40 -0.36 -1.72 16 21 C 0.08 0.88 5.64 -83.70 -0.47 0.41 16 22 N -0.49 -4.40 4.78 -170.75 -0.82 -5.22 16 23 C 0.01 0.09 4.33 -3.71 -0.02 0.08 16 24 C 0.06 0.41 7.01 37.21 0.26 0.67 16 25 O -0.39 -3.32 10.83 -35.23 -0.38 -3.70 16 26 C 0.06 0.44 7.01 37.21 0.26 0.70 16 27 C 0.02 0.15 5.41 -3.72 -0.02 0.13 16 28 C -0.15 -1.47 8.81 -39.40 -0.35 -1.81 16 29 C -0.12 -1.28 9.96 -39.42 -0.39 -1.67 16 30 H 0.01 0.10 6.91 -51.92 -0.36 -0.25 16 31 H 0.03 0.77 6.41 -51.93 -0.33 0.44 16 32 H 0.09 2.34 6.07 -51.93 -0.32 2.02 16 33 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 34 H 0.06 1.24 5.88 -51.93 -0.31 0.94 16 35 H 0.07 1.65 6.76 -51.93 -0.35 1.30 16 36 H 0.01 0.22 6.46 -51.93 -0.34 -0.11 16 37 H 0.10 1.55 7.93 -51.93 -0.41 1.14 16 38 H 0.06 0.89 7.06 -51.93 -0.37 0.53 16 39 H 0.41 3.62 8.82 -40.82 -0.36 3.26 16 40 H 0.15 2.25 6.22 -52.49 -0.33 1.92 16 41 H 0.13 1.30 7.19 -52.49 -0.38 0.92 16 42 H 0.09 0.57 7.21 -51.93 -0.37 0.20 16 43 H 0.05 0.41 7.55 -51.93 -0.39 0.02 16 44 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 45 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 48 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 49 H 0.09 0.72 6.86 -51.93 -0.36 0.36 16 50 H 0.13 0.96 5.81 -52.48 -0.30 0.66 16 51 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 LS Contribution 391.45 15.07 5.90 5.90 Total: -1.00 -32.05 391.45 -10.24 -42.29 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -7.73 Total: 3.97 kcal Atomic # 6 Polarization: -3.09 SS G_CDS: -1.78 Total: -4.88 kcal Atomic # 7 Polarization: -49.09 SS G_CDS: -1.30 Total: -50.39 kcal Atomic # 8 Polarization: -12.98 SS G_CDS: -0.32 Total: -13.30 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -32.05 -10.24 -42.29 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053602994.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.749 kcal (2) G-P(sol) polarization free energy of solvation -32.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds