Wall clock time and date at job start Wed Apr 1 2020 04:51:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47288 * 2 1 4 4 C 1.50704 * 109.47049 * 119.99839 * 2 1 3 5 5 H 1.08003 * 119.99706 * 119.99684 * 4 2 1 6 6 C 1.37875 * 119.99974 * 300.00373 * 4 2 1 7 7 N 1.31515 * 119.99909 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99975 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47032 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.47284 * 119.99857 * 8 6 4 11 11 H 1.48501 * 109.46839 * 239.99637 * 8 6 4 12 12 N 1.46900 * 109.47248 * 239.99784 * 2 1 3 13 13 C 1.46903 * 110.99834 * 306.05136 * 12 2 1 14 14 C 1.46898 * 111.00023 * 69.99844 * 12 2 1 15 15 C 1.50704 * 109.47152 * 170.00006 * 14 12 2 16 16 O 1.21286 * 119.99969 * 0.02562 * 15 14 12 17 17 N 1.34779 * 119.99844 * 180.02562 * 15 14 12 18 18 C 1.40150 * 119.99851 * 184.62306 * 17 15 14 19 19 C 1.38852 * 119.99400 * 324.90886 * 18 17 15 20 20 C 1.38068 * 120.00115 * 179.97438 * 19 18 17 21 21 C 1.38885 * 119.99817 * 359.97438 * 20 19 18 22 22 N 1.39890 * 120.00722 * 179.97438 * 21 20 19 23 23 C 1.47009 * 111.00025 * 180.02562 * 22 21 20 24 24 C 1.53104 * 109.25702 * 177.60712 * 23 22 21 25 25 O 1.43013 * 109.25596 * 56.84906 * 24 23 22 26 26 C 1.43014 * 113.73956 * 301.32746 * 25 24 23 27 27 C 1.47007 * 110.99951 * 56.36628 * 22 21 20 28 28 C 1.38898 * 119.98855 * 0.25842 * 21 20 19 29 29 C 1.38061 * 119.99515 * 359.48700 * 28 21 20 30 30 H 1.09008 * 109.46906 * 60.00365 * 1 2 3 31 31 H 1.08999 * 109.47288 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.47406 * 300.00417 * 1 2 3 33 33 H 0.97003 * 120.00076 * 180.02562 * 7 6 4 34 34 H 1.09004 * 109.46818 * 183.95638 * 13 12 2 35 35 H 1.09000 * 109.46814 * 303.94671 * 13 12 2 36 36 H 1.08991 * 109.47860 * 63.95336 * 13 12 2 37 37 H 1.09003 * 109.46996 * 50.00098 * 14 12 2 38 38 H 1.09000 * 109.47265 * 290.00206 * 14 12 2 39 39 H 0.97005 * 120.00056 * 4.62443 * 17 15 14 40 40 H 1.07993 * 119.99996 * 359.95862 * 19 18 17 41 41 H 1.08002 * 119.99557 * 180.02562 * 20 19 18 42 42 H 1.09004 * 109.51048 * 57.67406 * 23 22 21 43 43 H 1.08997 * 109.51076 * 297.54233 * 23 22 21 44 44 H 1.08996 * 109.50446 * 176.78693 * 24 23 22 45 45 H 1.09002 * 109.50473 * 296.87292 * 24 23 22 46 46 H 1.09003 * 109.51096 * 178.60690 * 26 25 24 47 47 H 1.09001 * 109.51098 * 298.73787 * 26 25 24 48 48 H 1.09000 * 109.50826 * 62.45465 * 27 22 21 49 49 H 1.09001 * 109.50690 * 302.32981 * 27 22 21 50 50 H 1.08004 * 119.99748 * 179.74282 * 28 21 20 51 51 H 1.08001 * 119.99841 * 180.27200 * 29 28 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9434 0.8302 2.6033 8 14 2.3224 -1.1195 4.0080 9 1 3.1474 -2.2862 3.6038 10 1 3.1471 -0.1857 4.8161 11 1 1.1677 -1.5865 4.8165 12 7 2.0197 -0.6925 -1.1994 13 6 1.4342 -2.0355 -1.3078 14 6 1.7529 0.0971 -2.4090 15 6 2.4775 -0.5164 -3.5794 16 8 3.1495 -1.5137 -3.4215 17 7 2.3786 0.0430 -4.8016 18 6 2.9719 -0.5804 -5.9077 19 6 4.1732 -1.2609 -5.7593 20 6 4.7575 -1.8756 -6.8488 21 6 4.1435 -1.8138 -8.0930 22 7 4.7357 -2.4361 -9.1971 23 6 3.9229 -2.2467 -10.4073 24 6 4.6353 -2.8905 -11.5999 25 8 4.8726 -4.2722 -11.3177 26 6 5.6618 -4.4933 -10.1458 27 6 4.9604 -3.8656 -8.9383 28 6 2.9444 -1.1289 -8.2422 29 6 2.3577 -0.5188 -7.1514 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 0.7093 1.1618 3.4843 34 1 1.8664 -2.5521 -2.1648 35 1 1.6466 -2.5988 -0.3991 36 1 0.3556 -1.9521 -1.4399 37 1 2.1025 1.1188 -2.2604 38 1 0.6814 0.1052 -2.6087 39 1 1.8968 0.8772 -4.9156 40 1 4.6505 -1.3092 -4.7918 41 1 5.6916 -2.4052 -6.7332 42 1 3.7910 -1.1809 -10.5942 43 1 2.9488 -2.7158 -10.2687 44 1 4.0098 -2.8025 -12.4882 45 1 5.5855 -2.3851 -11.7723 46 1 5.7789 -5.5646 -9.9824 47 1 6.6423 -4.0350 -10.2754 48 1 4.0031 -4.3610 -8.7758 49 1 5.5856 -3.9814 -8.0530 50 1 2.4689 -1.0772 -9.2105 51 1 1.4231 0.0100 -7.2665 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000053602994.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:27 Heat of formation + Delta-G solvation = -39.178900 kcal Electronic energy + Delta-G solvation = -30206.295610 eV Core-core repulsion = 26105.749905 eV Total energy + Delta-G solvation = -4100.545705 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.78200 -41.03527 -39.46261 -38.39328 -36.88703 -35.00244 -34.69991 -32.76230 -31.57429 -31.30462 -30.31968 -28.92288 -27.30523 -27.16358 -25.64005 -25.59803 -23.53803 -22.90429 -21.96296 -21.16379 -20.87038 -18.99352 -18.48651 -18.13473 -17.92712 -17.18374 -16.79803 -16.67586 -16.44617 -16.20637 -16.05502 -15.87132 -15.75271 -15.56543 -15.06756 -14.97865 -14.78028 -14.38619 -14.35213 -14.24162 -13.69642 -13.50723 -13.40356 -13.17935 -12.91638 -12.80286 -12.73464 -12.59688 -12.55168 -12.41050 -12.29690 -12.12221 -12.05874 -11.87493 -11.63134 -11.42491 -10.99823 -10.77476 -10.60726 -10.48658 -10.14997 -9.91231 -8.87027 -8.54873 -8.11392 -6.20451 0.25197 0.41353 1.40398 1.42978 1.54718 1.60666 1.99605 2.43940 2.52941 2.85257 2.92698 3.17911 3.43371 3.73388 3.81184 3.84151 3.96103 3.99024 4.10724 4.19123 4.25799 4.33980 4.37552 4.42004 4.49128 4.51823 4.58341 4.61806 4.67657 4.70048 4.75239 4.77280 4.83182 4.91482 4.92388 5.00747 5.08325 5.12061 5.20488 5.22555 5.39501 5.50654 5.52806 5.70954 5.76812 5.80049 5.93453 6.12581 6.17462 6.24890 6.43756 6.45500 6.71944 6.91266 7.22692 7.48140 8.94595 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.027021 B = 0.001781 C = 0.001711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.985370 B =15716.724789 C =16364.533503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.215 3.785 3 H 0.018 0.982 4 C -0.514 4.514 5 H 0.048 0.952 6 C 0.014 3.986 7 N -0.916 5.916 8 Si 0.956 3.044 9 H -0.274 1.274 10 H -0.280 1.280 11 H -0.279 1.279 12 N -0.536 5.536 13 C 0.042 3.958 14 C 0.038 3.962 15 C 0.518 3.482 16 O -0.539 6.539 17 N -0.663 5.663 18 C 0.112 3.888 19 C -0.115 4.115 20 C -0.127 4.127 21 C 0.086 3.914 22 N -0.492 5.492 23 C 0.011 3.989 24 C 0.061 3.939 25 O -0.403 6.403 26 C 0.064 3.936 27 C 0.019 3.981 28 C -0.149 4.149 29 C -0.113 4.113 30 H 0.035 0.965 31 H 0.030 0.970 32 H 0.063 0.937 33 H 0.262 0.738 34 H 0.065 0.935 35 H 0.050 0.950 36 H 0.021 0.979 37 H 0.111 0.889 38 H 0.078 0.922 39 H 0.426 0.574 40 H 0.116 0.884 41 H 0.129 0.871 42 H 0.108 0.892 43 H 0.054 0.946 44 H 0.122 0.878 45 H 0.064 0.936 46 H 0.116 0.884 47 H 0.066 0.934 48 H 0.043 0.957 49 H 0.094 0.906 50 H 0.154 0.846 51 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.254 -2.962 -30.310 30.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.109 3.891 3 H 0.035 0.965 4 C -0.552 4.552 5 H 0.067 0.933 6 C -0.185 4.185 7 N -0.557 5.557 8 Si 0.782 3.218 9 H -0.199 1.199 10 H -0.206 1.206 11 H -0.205 1.205 12 N -0.260 5.260 13 C -0.106 4.106 14 C -0.094 4.094 15 C 0.306 3.694 16 O -0.415 6.415 17 N -0.311 5.311 18 C 0.017 3.983 19 C -0.136 4.136 20 C -0.148 4.148 21 C -0.012 4.012 22 N -0.209 5.209 23 C -0.116 4.116 24 C -0.016 4.016 25 O -0.322 6.322 26 C -0.013 4.013 27 C -0.107 4.107 28 C -0.170 4.170 29 C -0.133 4.133 30 H 0.054 0.946 31 H 0.049 0.951 32 H 0.082 0.918 33 H 0.071 0.929 34 H 0.083 0.917 35 H 0.069 0.931 36 H 0.039 0.961 37 H 0.129 0.871 38 H 0.095 0.905 39 H 0.265 0.735 40 H 0.134 0.866 41 H 0.147 0.853 42 H 0.126 0.874 43 H 0.072 0.928 44 H 0.140 0.860 45 H 0.082 0.918 46 H 0.134 0.866 47 H 0.084 0.916 48 H 0.061 0.939 49 H 0.113 0.887 50 H 0.172 0.828 51 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 4.561 -3.588 -30.202 30.754 hybrid contribution -1.304 0.131 1.655 2.111 sum 3.257 -3.456 -28.547 28.939 Atomic orbital electron populations 1.22216 0.99682 0.99360 1.00590 1.19149 0.90449 0.93099 0.86420 0.96459 1.21358 1.30448 1.12331 0.91101 0.93345 1.25603 0.95481 0.95883 1.01522 1.69985 1.37796 1.23912 1.23959 0.85539 0.78099 0.78589 0.79578 1.19904 1.20575 1.20478 1.61910 1.59732 1.02911 1.01433 1.22216 0.95853 0.91030 1.01494 1.21985 0.99202 0.99059 0.89104 1.21045 0.80679 0.83644 0.84049 1.90636 1.40086 1.26621 1.84174 1.43414 1.55299 1.26934 1.05432 1.17919 0.93159 0.99528 0.87691 1.21135 0.94528 0.98864 0.99089 1.20716 1.00648 1.02352 0.91086 1.19021 0.92984 0.98815 0.90383 1.59444 1.46028 1.12768 1.02639 1.23080 0.95494 1.03437 0.89563 1.22868 1.00742 0.81047 0.96945 1.87982 1.73048 1.25984 1.45198 1.22793 0.93698 1.01966 0.82798 1.22976 1.01134 0.85849 1.00741 1.21342 0.94281 1.01253 1.00109 1.21041 1.00383 1.01426 0.90494 0.94632 0.95091 0.91776 0.92905 0.91671 0.93125 0.96061 0.87070 0.90459 0.73527 0.86613 0.85306 0.87411 0.92796 0.86029 0.91800 0.86569 0.91565 0.93898 0.88736 0.82822 0.82815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.36 8.22 71.98 0.59 -6.77 16 2 C 0.22 10.72 2.31 44.17 0.10 10.82 16 3 H 0.02 0.94 7.93 -2.39 -0.02 0.92 16 4 C -0.51 -28.69 7.91 25.60 0.20 -28.48 16 5 H 0.05 2.80 7.12 -2.91 -0.02 2.78 16 6 C 0.01 0.76 5.30 84.65 0.45 1.21 16 7 N -0.92 -51.78 11.32 21.45 0.24 -51.54 16 8 Si 0.96 44.39 29.54 68.60 2.03 46.42 16 9 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 10 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 11 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 12 N -0.54 -23.38 4.44 -906.03 -4.02 -27.40 16 13 C 0.04 1.78 8.34 127.69 1.06 2.84 16 14 C 0.04 1.24 5.02 85.56 0.43 1.67 16 15 C 0.52 16.39 7.40 87.66 0.65 17.04 16 16 O -0.54 -21.36 11.75 -3.05 -0.04 -21.39 16 17 N -0.66 -15.29 5.34 -303.35 -1.62 -16.91 16 18 C 0.11 2.67 6.30 38.10 0.24 2.91 16 19 C -0.12 -3.18 8.69 22.38 0.19 -2.99 16 20 C -0.13 -2.98 9.20 22.38 0.21 -2.77 16 21 C 0.09 1.68 5.64 38.17 0.22 1.90 16 22 N -0.49 -8.11 4.78 -694.14 -3.31 -11.42 16 23 C 0.01 0.13 4.33 86.32 0.37 0.51 16 24 C 0.06 0.65 7.01 72.02 0.50 1.15 16 25 O -0.40 -6.23 10.83 -148.98 -1.61 -7.84 16 26 C 0.06 0.82 7.01 72.01 0.50 1.32 16 27 C 0.02 0.29 5.41 86.32 0.47 0.76 16 28 C -0.15 -2.49 8.81 22.39 0.20 -2.30 16 29 C -0.11 -2.01 9.96 22.37 0.22 -1.78 16 30 H 0.03 1.38 6.91 -2.38 -0.02 1.37 16 31 H 0.03 1.40 6.41 -2.39 -0.02 1.39 16 32 H 0.06 3.32 6.07 -2.39 -0.01 3.31 16 33 H 0.26 14.05 8.31 -92.71 -0.77 13.28 16 34 H 0.06 2.68 5.88 -2.39 -0.01 2.67 16 35 H 0.05 2.32 6.76 -2.39 -0.02 2.30 16 36 H 0.02 0.83 6.46 -2.39 -0.02 0.81 16 37 H 0.11 3.36 7.93 -2.39 -0.02 3.34 16 38 H 0.08 2.25 7.06 -2.39 -0.02 2.23 16 39 H 0.43 6.52 8.82 -92.70 -0.82 5.70 16 40 H 0.12 3.86 6.22 -2.91 -0.02 3.84 16 41 H 0.13 2.77 7.19 -2.91 -0.02 2.75 16 42 H 0.11 0.96 7.21 -2.38 -0.02 0.94 16 43 H 0.05 0.67 7.55 -2.39 -0.02 0.65 16 44 H 0.12 0.77 8.14 -2.39 -0.02 0.75 16 45 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 46 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 47 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 48 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 49 H 0.09 1.41 6.86 -2.39 -0.02 1.40 16 50 H 0.15 1.73 5.81 -2.91 -0.02 1.71 16 51 H 0.15 1.81 8.06 -2.91 -0.02 1.79 16 Total: -1.00 -70.26 391.45 -1.59 -71.84 By element: Atomic # 1 Polarization: 21.07 SS G_CDS: 0.14 Total: 21.21 kcal Atomic # 6 Polarization: -9.57 SS G_CDS: 6.61 Total: -2.96 kcal Atomic # 7 Polarization: -98.56 SS G_CDS: -8.72 Total: -107.27 kcal Atomic # 8 Polarization: -27.59 SS G_CDS: -1.65 Total: -29.24 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Total: -70.26 -1.59 -71.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053602994.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.665 kcal (2) G-P(sol) polarization free energy of solvation -70.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds