Wall clock time and date at job start Wed Apr 1 2020 04:51:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08996 * 109.47186 * 2 1 4 4 C 1.50691 * 109.47327 * 120.00180 * 2 1 3 5 5 H 1.08006 * 120.00394 * 119.99477 * 4 2 1 6 6 C 1.37885 * 119.99958 * 299.99582 * 4 2 1 7 7 N 1.31509 * 119.99969 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00067 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47197 * 59.99830 * 8 6 4 10 10 H 1.48492 * 109.47312 * 180.02562 * 8 6 4 11 11 H 1.48510 * 109.47109 * 300.00374 * 8 6 4 12 12 N 1.46499 * 109.46689 * 239.99753 * 2 1 3 13 13 C 1.46500 * 120.00569 * 300.00296 * 12 2 1 14 14 C 1.34787 * 119.99787 * 119.99824 * 12 2 1 15 15 O 1.21279 * 119.99790 * 0.02562 * 14 12 2 16 16 C 1.50699 * 119.99804 * 180.02562 * 14 12 2 17 17 C 1.53001 * 109.47045 * 180.02562 * 16 14 12 18 18 N 1.46499 * 109.47403 * 179.97438 * 17 16 14 19 19 C 1.34774 * 120.00002 * 179.97438 * 18 17 16 20 20 O 1.21582 * 120.00042 * 0.02562 * 19 18 17 21 21 N 1.34779 * 119.99640 * 180.02562 * 19 18 17 22 22 C 1.46499 * 120.00212 * 359.97438 * 21 19 18 23 23 C 1.46502 * 119.99726 * 180.02562 * 21 19 18 24 24 C 1.50691 * 109.47318 * 269.99867 * 23 21 19 25 25 C 1.38237 * 120.00087 * 269.73144 * 24 23 21 26 26 C 1.38237 * 119.99887 * 179.76622 * 25 24 23 27 27 C 1.38240 * 119.99987 * 0.50242 * 26 25 24 28 28 C 1.38235 * 120.00002 * 359.74667 * 27 26 25 29 29 C 1.38237 * 120.00019 * 0.02562 * 28 27 26 30 30 H 1.08996 * 109.47213 * 59.99425 * 1 2 3 31 31 H 1.08996 * 109.46920 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46483 * 299.99800 * 1 2 3 33 33 H 0.96996 * 119.99977 * 180.02562 * 7 6 4 34 34 H 1.09002 * 109.46704 * 270.00364 * 13 12 2 35 35 H 1.09004 * 109.46958 * 29.99748 * 13 12 2 36 36 H 1.09001 * 109.47326 * 149.99884 * 13 12 2 37 37 H 1.09002 * 109.47507 * 59.99973 * 16 14 12 38 38 H 1.09004 * 109.47017 * 299.99981 * 16 14 12 39 39 H 1.09002 * 109.47172 * 59.99545 * 17 16 14 40 40 H 1.09006 * 109.46781 * 300.00246 * 17 16 14 41 41 H 0.97001 * 119.99636 * 0.02562 * 18 17 16 42 42 H 1.09002 * 109.47391 * 270.00122 * 22 21 19 43 43 H 1.09001 * 109.46813 * 150.00179 * 22 21 19 44 44 H 1.09004 * 109.47041 * 30.00306 * 22 21 19 45 45 H 1.09002 * 109.47278 * 30.00038 * 23 21 19 46 46 H 1.09006 * 109.46998 * 149.99560 * 23 21 19 47 47 H 1.07995 * 119.99731 * 359.97438 * 25 24 23 48 48 H 1.07995 * 120.00222 * 180.22621 * 26 25 24 49 49 H 1.08005 * 119.99922 * 179.72333 * 27 26 25 50 50 H 1.07998 * 120.00124 * 179.97438 * 28 27 26 51 51 H 1.07999 * 120.00129 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5886 1.1313 6 6 1.6994 -0.2393 2.4827 7 7 0.9430 0.8297 2.6034 8 14 2.3227 -1.1195 4.0079 9 1 3.8077 -1.1190 4.0076 10 1 1.8272 -0.4199 5.2204 11 1 1.8283 -2.5198 4.0081 12 7 2.0183 -0.6907 -1.1962 13 6 1.6643 -2.0932 -1.4281 14 6 2.7931 -0.0356 -2.0835 15 8 3.0865 1.1253 -1.8913 16 6 3.2949 -0.7459 -3.3142 17 6 4.1455 0.2155 -4.1468 18 7 4.6338 -0.4751 -5.3429 19 6 5.4086 0.1798 -6.2301 20 8 5.7028 1.3437 -6.0374 21 7 5.8574 -0.4554 -7.3308 22 6 5.5034 -1.8580 -7.5626 23 6 6.7002 0.2563 -8.2948 24 6 5.8294 0.9116 -9.3356 25 6 5.4973 0.2269 -10.4896 26 6 4.6946 0.8262 -11.4422 27 6 4.2324 2.1141 -11.2454 28 6 4.5688 2.8007 -10.0938 29 6 5.3676 2.1997 -9.1391 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3632 0.5138 0.8900 33 1 0.7090 1.1613 3.4844 34 1 2.4156 -2.7377 -0.9717 35 1 0.6903 -2.3002 -0.9846 36 1 1.6237 -2.2852 -2.5003 37 1 2.4469 -1.0882 -3.9074 38 1 3.9003 -1.6026 -3.0179 39 1 4.9935 0.5573 -3.5534 40 1 3.5404 1.0724 -4.4430 41 1 4.3988 -1.4036 -5.4968 42 1 6.2549 -2.5026 -7.1066 43 1 5.4624 -2.0499 -8.6348 44 1 4.5296 -2.0651 -7.1188 45 1 7.2820 1.0181 -7.7759 46 1 7.3753 -0.4499 -8.7782 47 1 5.8623 -0.7775 -10.6455 48 1 4.4321 0.2900 -12.3421 49 1 3.6089 2.5840 -11.9917 50 1 4.2081 3.8071 -9.9402 51 1 5.6308 2.7362 -8.2395 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000067300994.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:57 Heat of formation + Delta-G solvation = -29.951442 kcal Electronic energy + Delta-G solvation = -29925.956872 eV Core-core repulsion = 25825.811300 eV Total energy + Delta-G solvation = -4100.145572 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.50167 -39.33413 -39.00171 -36.00568 -35.48763 -34.95842 -32.91827 -32.21000 -31.12044 -30.66040 -29.04814 -27.65547 -26.22783 -25.96359 -25.20933 -23.62086 -22.77647 -21.71073 -20.88004 -20.13751 -18.51459 -17.90449 -17.18063 -16.87982 -16.45431 -16.19852 -15.93828 -15.52698 -15.30512 -15.19209 -15.00387 -14.39976 -14.09046 -13.98933 -13.94123 -13.62484 -13.24125 -13.17944 -12.95473 -12.80523 -12.69302 -12.59490 -12.27402 -12.12858 -11.88181 -11.58601 -11.50938 -11.37140 -11.24438 -11.19773 -11.05532 -10.82126 -10.69659 -10.26911 -10.24509 -10.16538 -9.20394 -9.19544 -9.14474 -9.06472 -8.97244 -8.75194 -8.42629 -7.60910 -6.07026 -4.15218 1.02213 1.18165 2.50672 3.12889 3.27484 3.31795 3.33249 3.37350 3.53813 3.74870 4.07086 4.40111 4.51198 4.54606 4.69292 4.76386 4.83534 4.89494 4.96761 5.08786 5.16806 5.20012 5.23759 5.24388 5.27445 5.41162 5.44945 5.50045 5.73698 5.74151 5.82590 5.99088 6.04310 6.07995 6.19991 6.21248 6.25938 6.30194 6.39178 6.43963 6.73350 6.75704 6.77082 6.81132 7.04851 7.41311 7.51492 7.71091 7.79679 8.01017 8.19398 8.50623 8.51123 8.82596 9.02986 9.51151 10.98232 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.022058 B = 0.001785 C = 0.001751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.055453 B =15680.184749 C =15985.424144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.257 3.743 3 H 0.064 0.936 4 C -0.526 4.526 5 H 0.058 0.942 6 C 0.064 3.936 7 N -0.887 5.887 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 N -0.593 5.593 13 C 0.086 3.914 14 C 0.507 3.493 15 O -0.548 6.548 16 C -0.151 4.151 17 C 0.153 3.847 18 N -0.745 5.745 19 C 0.706 3.294 20 O -0.581 6.581 21 N -0.631 5.631 22 C 0.079 3.921 23 C 0.173 3.827 24 C -0.108 4.108 25 C -0.109 4.109 26 C -0.128 4.128 27 C -0.118 4.118 28 C -0.123 4.123 29 C -0.091 4.091 30 H 0.011 0.989 31 H 0.030 0.970 32 H 0.094 0.906 33 H 0.264 0.736 34 H 0.049 0.951 35 H 0.073 0.927 36 H 0.051 0.949 37 H 0.091 0.909 38 H 0.093 0.907 39 H 0.076 0.924 40 H 0.075 0.925 41 H 0.393 0.607 42 H 0.057 0.943 43 H 0.072 0.928 44 H 0.066 0.934 45 H 0.094 0.906 46 H 0.084 0.916 47 H 0.118 0.882 48 H 0.119 0.881 49 H 0.119 0.881 50 H 0.121 0.879 51 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.169 -7.913 -27.405 29.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.157 3.843 3 H 0.082 0.918 4 C -0.564 4.564 5 H 0.076 0.924 6 C -0.139 4.139 7 N -0.526 5.526 8 Si 0.727 3.273 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.203 1.203 12 N -0.325 5.325 13 C -0.058 4.058 14 C 0.293 3.707 15 O -0.427 6.427 16 C -0.192 4.192 17 C 0.029 3.971 18 N -0.402 5.402 19 C 0.407 3.593 20 O -0.458 6.458 21 N -0.369 5.369 22 C -0.064 4.064 23 C 0.050 3.950 24 C -0.110 4.110 25 C -0.127 4.127 26 C -0.146 4.146 27 C -0.137 4.137 28 C -0.142 4.142 29 C -0.110 4.110 30 H 0.030 0.970 31 H 0.049 0.951 32 H 0.112 0.888 33 H 0.074 0.926 34 H 0.067 0.933 35 H 0.092 0.908 36 H 0.070 0.930 37 H 0.110 0.890 38 H 0.111 0.889 39 H 0.094 0.906 40 H 0.093 0.907 41 H 0.228 0.772 42 H 0.076 0.924 43 H 0.091 0.909 44 H 0.085 0.915 45 H 0.112 0.888 46 H 0.102 0.898 47 H 0.136 0.864 48 H 0.137 0.863 49 H 0.137 0.863 50 H 0.139 0.861 51 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 7.436 -6.323 -26.936 28.650 hybrid contribution -0.042 -1.255 0.751 1.463 sum 7.394 -7.578 -26.185 28.245 Atomic orbital electron populations 1.22097 0.98246 0.99315 1.00900 1.18949 0.90848 0.94586 0.79911 0.91815 1.21266 1.31898 1.12983 0.90296 0.92378 1.24905 0.94974 0.95001 0.98989 1.69864 1.36253 1.22554 1.23879 0.86544 0.79243 0.79507 0.82001 1.20253 1.21174 1.20283 1.48240 1.48945 1.11656 1.23613 1.21562 1.01701 0.83260 0.99228 1.20054 0.79447 0.87091 0.84144 1.90693 1.58137 1.17027 1.76844 1.21837 1.00860 0.99994 0.96523 1.20932 0.98298 0.94202 0.83672 1.45309 1.54809 1.15600 1.24439 1.15826 0.79076 0.84748 0.79646 1.90927 1.62441 1.15234 1.77214 1.47030 1.55226 1.12154 1.22489 1.21726 1.00445 0.81744 1.02500 1.20199 0.90526 0.96488 0.87799 1.20295 1.00169 0.94915 0.95606 1.21018 0.98466 0.99386 0.93872 1.21101 0.98614 0.95541 0.99313 1.21186 0.99827 0.95009 0.97639 1.21231 0.98464 1.00212 0.94244 1.21306 0.96077 0.94740 0.98843 0.96958 0.95131 0.88779 0.92611 0.93283 0.90841 0.93010 0.89040 0.88898 0.90552 0.90705 0.77171 0.92448 0.90908 0.91501 0.88769 0.89766 0.86374 0.86251 0.86267 0.86051 0.85146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.49 8.95 37.16 0.33 -3.16 16 2 C 0.26 6.54 2.64 -69.08 -0.18 6.36 16 3 H 0.06 1.90 6.90 -51.93 -0.36 1.54 16 4 C -0.53 -14.15 8.37 -34.44 -0.29 -14.43 16 5 H 0.06 1.53 7.65 -52.48 -0.40 1.13 16 6 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 7 N -0.89 -25.16 11.32 55.43 0.63 -24.53 16 8 Si 0.90 21.03 29.54 -169.99 -5.02 16.01 16 9 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 10 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 11 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 12 N -0.59 -12.29 2.75 -175.26 -0.48 -12.77 16 13 C 0.09 1.36 9.48 59.85 0.57 1.93 16 14 C 0.51 10.13 7.67 -10.98 -0.08 10.05 16 15 O -0.55 -13.47 15.31 5.56 0.09 -13.38 16 16 C -0.15 -2.04 4.37 -27.88 -0.12 -2.16 16 17 C 0.15 2.23 4.96 -4.04 -0.02 2.21 16 18 N -0.75 -8.58 5.42 -65.22 -0.35 -8.94 16 19 C 0.71 9.34 8.28 -86.92 -0.72 8.62 16 20 O -0.58 -10.08 15.45 5.29 0.08 -10.00 16 21 N -0.63 -5.96 2.86 -188.74 -0.54 -6.50 16 22 C 0.08 0.44 10.20 59.85 0.61 1.05 16 23 C 0.17 1.50 5.53 -5.20 -0.03 1.47 16 24 C -0.11 -1.02 5.46 -104.63 -0.57 -1.59 16 25 C -0.11 -0.84 9.70 -39.58 -0.38 -1.23 16 26 C -0.13 -0.98 10.05 -39.58 -0.40 -1.38 16 27 C -0.12 -0.99 10.05 -39.58 -0.40 -1.38 16 28 C -0.12 -1.19 10.05 -39.58 -0.40 -1.59 16 29 C -0.09 -0.99 9.70 -39.58 -0.38 -1.38 16 30 H 0.01 0.26 8.14 -51.93 -0.42 -0.17 16 31 H 0.03 0.66 6.66 -51.93 -0.35 0.31 16 32 H 0.09 2.46 6.07 -51.93 -0.32 2.15 16 33 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 34 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.07 1.19 6.43 -51.93 -0.33 0.85 16 36 H 0.05 0.60 6.44 -51.93 -0.33 0.27 16 37 H 0.09 0.99 7.40 -51.93 -0.38 0.61 16 38 H 0.09 1.05 8.11 -51.93 -0.42 0.63 16 39 H 0.08 1.30 8.10 -51.93 -0.42 0.88 16 40 H 0.07 1.26 8.10 -51.93 -0.42 0.84 16 41 H 0.39 3.19 6.20 -40.82 -0.25 2.94 16 42 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 43 H 0.07 0.30 8.07 -51.93 -0.42 -0.12 16 44 H 0.07 0.32 6.36 -51.93 -0.33 -0.01 16 45 H 0.09 0.97 7.36 -51.93 -0.38 0.58 16 46 H 0.08 0.49 8.01 -51.93 -0.42 0.07 16 47 H 0.12 0.64 8.06 -52.49 -0.42 0.21 16 48 H 0.12 0.66 8.06 -52.49 -0.42 0.23 16 49 H 0.12 0.75 8.06 -52.48 -0.42 0.33 16 50 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 51 H 0.13 1.61 7.58 -52.49 -0.40 1.21 16 LS Contribution 415.14 15.07 6.26 6.26 Total: -1.00 -35.13 415.14 -9.94 -45.06 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -8.03 Total: 3.76 kcal Atomic # 6 Polarization: 7.60 SS G_CDS: -2.56 Total: 5.04 kcal Atomic # 7 Polarization: -52.00 SS G_CDS: -0.75 Total: -52.75 kcal Atomic # 8 Polarization: -23.55 SS G_CDS: 0.17 Total: -23.38 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -35.13 -9.94 -45.06 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067300994.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.113 kcal (2) G-P(sol) polarization free energy of solvation -35.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds