Wall clock time and date at job start Wed Apr 1 2020 04:51:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08996 * 109.47186 * 2 1 4 4 C 1.50691 * 109.47327 * 120.00180 * 2 1 3 5 5 H 1.08006 * 120.00394 * 119.99477 * 4 2 1 6 6 C 1.37885 * 119.99958 * 299.99582 * 4 2 1 7 7 N 1.31509 * 119.99969 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00067 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47197 * 59.99830 * 8 6 4 10 10 H 1.48492 * 109.47312 * 180.02562 * 8 6 4 11 11 H 1.48510 * 109.47109 * 300.00374 * 8 6 4 12 12 N 1.46499 * 109.46689 * 239.99753 * 2 1 3 13 13 C 1.46500 * 120.00569 * 300.00296 * 12 2 1 14 14 C 1.34787 * 119.99787 * 119.99824 * 12 2 1 15 15 O 1.21279 * 119.99790 * 0.02562 * 14 12 2 16 16 C 1.50699 * 119.99804 * 180.02562 * 14 12 2 17 17 C 1.53001 * 109.47045 * 180.02562 * 16 14 12 18 18 N 1.46499 * 109.47403 * 179.97438 * 17 16 14 19 19 C 1.34774 * 120.00002 * 179.97438 * 18 17 16 20 20 O 1.21582 * 120.00042 * 0.02562 * 19 18 17 21 21 N 1.34779 * 119.99640 * 180.02562 * 19 18 17 22 22 C 1.46499 * 120.00212 * 359.97438 * 21 19 18 23 23 C 1.46502 * 119.99726 * 180.02562 * 21 19 18 24 24 C 1.50691 * 109.47318 * 269.99867 * 23 21 19 25 25 C 1.38237 * 120.00087 * 269.73144 * 24 23 21 26 26 C 1.38237 * 119.99887 * 179.76622 * 25 24 23 27 27 C 1.38240 * 119.99987 * 0.50242 * 26 25 24 28 28 C 1.38235 * 120.00002 * 359.74667 * 27 26 25 29 29 C 1.38237 * 120.00019 * 0.02562 * 28 27 26 30 30 H 1.08996 * 109.47213 * 59.99425 * 1 2 3 31 31 H 1.08996 * 109.46920 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46483 * 299.99800 * 1 2 3 33 33 H 0.96996 * 119.99977 * 180.02562 * 7 6 4 34 34 H 1.09002 * 109.46704 * 270.00364 * 13 12 2 35 35 H 1.09004 * 109.46958 * 29.99748 * 13 12 2 36 36 H 1.09001 * 109.47326 * 149.99884 * 13 12 2 37 37 H 1.09002 * 109.47507 * 59.99973 * 16 14 12 38 38 H 1.09004 * 109.47017 * 299.99981 * 16 14 12 39 39 H 1.09002 * 109.47172 * 59.99545 * 17 16 14 40 40 H 1.09006 * 109.46781 * 300.00246 * 17 16 14 41 41 H 0.97001 * 119.99636 * 0.02562 * 18 17 16 42 42 H 1.09002 * 109.47391 * 270.00122 * 22 21 19 43 43 H 1.09001 * 109.46813 * 150.00179 * 22 21 19 44 44 H 1.09004 * 109.47041 * 30.00306 * 22 21 19 45 45 H 1.09002 * 109.47278 * 30.00038 * 23 21 19 46 46 H 1.09006 * 109.46998 * 149.99560 * 23 21 19 47 47 H 1.07995 * 119.99731 * 359.97438 * 25 24 23 48 48 H 1.07995 * 120.00222 * 180.22621 * 26 25 24 49 49 H 1.08005 * 119.99922 * 179.72333 * 27 26 25 50 50 H 1.07998 * 120.00124 * 179.97438 * 28 27 26 51 51 H 1.07999 * 120.00129 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5886 1.1313 6 6 1.6994 -0.2393 2.4827 7 7 0.9430 0.8297 2.6034 8 14 2.3227 -1.1195 4.0079 9 1 3.8077 -1.1190 4.0076 10 1 1.8272 -0.4199 5.2204 11 1 1.8283 -2.5198 4.0081 12 7 2.0183 -0.6907 -1.1962 13 6 1.6643 -2.0932 -1.4281 14 6 2.7931 -0.0356 -2.0835 15 8 3.0865 1.1253 -1.8913 16 6 3.2949 -0.7459 -3.3142 17 6 4.1455 0.2155 -4.1468 18 7 4.6338 -0.4751 -5.3429 19 6 5.4086 0.1798 -6.2301 20 8 5.7028 1.3437 -6.0374 21 7 5.8574 -0.4554 -7.3308 22 6 5.5034 -1.8580 -7.5626 23 6 6.7002 0.2563 -8.2948 24 6 5.8294 0.9116 -9.3356 25 6 5.4973 0.2269 -10.4896 26 6 4.6946 0.8262 -11.4422 27 6 4.2324 2.1141 -11.2454 28 6 4.5688 2.8007 -10.0938 29 6 5.3676 2.1997 -9.1391 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3632 0.5138 0.8900 33 1 0.7090 1.1613 3.4844 34 1 2.4156 -2.7377 -0.9717 35 1 0.6903 -2.3002 -0.9846 36 1 1.6237 -2.2852 -2.5003 37 1 2.4469 -1.0882 -3.9074 38 1 3.9003 -1.6026 -3.0179 39 1 4.9935 0.5573 -3.5534 40 1 3.5404 1.0724 -4.4430 41 1 4.3988 -1.4036 -5.4968 42 1 6.2549 -2.5026 -7.1066 43 1 5.4624 -2.0499 -8.6348 44 1 4.5296 -2.0651 -7.1188 45 1 7.2820 1.0181 -7.7759 46 1 7.3753 -0.4499 -8.7782 47 1 5.8623 -0.7775 -10.6455 48 1 4.4321 0.2900 -12.3421 49 1 3.6089 2.5840 -11.9917 50 1 4.2081 3.8071 -9.9402 51 1 5.6308 2.7362 -8.2395 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000067300994.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:56 Heat of formation + Delta-G solvation = -52.784394 kcal Electronic energy + Delta-G solvation = -29926.946983 eV Core-core repulsion = 25825.811300 eV Total energy + Delta-G solvation = -4101.135683 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.43045 -40.73914 -39.89338 -37.30163 -36.70186 -36.20995 -34.80868 -33.06493 -31.99899 -31.76982 -30.62594 -28.21214 -27.57951 -27.28518 -26.83447 -24.85125 -23.42724 -22.64457 -22.36527 -21.14755 -19.85931 -18.96788 -18.51890 -18.08704 -17.80549 -17.31372 -17.09346 -16.91597 -16.53718 -16.08787 -15.93359 -15.88956 -15.32541 -15.03878 -14.90241 -14.58685 -14.31490 -14.27463 -14.15641 -13.77791 -13.69910 -13.49895 -13.44070 -13.34487 -13.15993 -12.92417 -12.77995 -12.74304 -12.64359 -12.55409 -12.40120 -12.16140 -12.11959 -12.10901 -11.84578 -11.34890 -11.17811 -10.68605 -10.47822 -10.26612 -9.81067 -9.75616 -9.50978 -9.30922 -8.13753 -6.30575 0.35694 0.51088 1.41308 1.44181 1.51331 1.61488 1.81259 2.12552 2.33845 2.50754 2.87995 3.11935 3.13925 3.67592 3.88110 3.91924 3.93744 4.07421 4.16974 4.27664 4.30637 4.31549 4.39007 4.59787 4.60648 4.66885 4.72128 4.75103 4.80326 4.82976 4.87778 4.90448 4.92800 4.94582 5.06761 5.11355 5.11658 5.16807 5.40308 5.47420 5.49052 5.56801 5.63434 5.63856 5.68590 5.70529 5.92508 6.04931 6.12977 6.17178 6.77750 6.84523 6.96443 7.33006 7.49332 7.55827 8.90284 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.022058 B = 0.001785 C = 0.001751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.055453 B =15680.184749 C =15985.424144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.259 3.741 3 H 0.004 0.996 4 C -0.536 4.536 5 H 0.063 0.937 6 C 0.011 3.989 7 N -0.919 5.919 8 Si 0.966 3.034 9 H -0.278 1.278 10 H -0.286 1.286 11 H -0.260 1.260 12 N -0.600 5.600 13 C 0.080 3.920 14 C 0.494 3.506 15 O -0.609 6.609 16 C -0.127 4.127 17 C 0.165 3.835 18 N -0.727 5.727 19 C 0.695 3.305 20 O -0.635 6.635 21 N -0.623 5.623 22 C 0.070 3.930 23 C 0.171 3.829 24 C -0.116 4.116 25 C -0.103 4.103 26 C -0.127 4.127 27 C -0.124 4.124 28 C -0.141 4.141 29 C -0.120 4.120 30 H 0.019 0.981 31 H 0.051 0.949 32 H 0.065 0.935 33 H 0.264 0.736 34 H 0.058 0.942 35 H 0.068 0.932 36 H 0.103 0.897 37 H 0.134 0.866 38 H 0.129 0.871 39 H 0.042 0.958 40 H 0.043 0.957 41 H 0.415 0.585 42 H 0.075 0.925 43 H 0.095 0.905 44 H 0.077 0.923 45 H 0.065 0.935 46 H 0.122 0.878 47 H 0.152 0.848 48 H 0.149 0.851 49 H 0.139 0.861 50 H 0.122 0.878 51 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.180 -12.842 -30.008 33.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.156 3.844 3 H 0.022 0.978 4 C -0.575 4.575 5 H 0.081 0.919 6 C -0.189 4.189 7 N -0.558 5.558 8 Si 0.791 3.209 9 H -0.204 1.204 10 H -0.211 1.211 11 H -0.184 1.184 12 N -0.331 5.331 13 C -0.062 4.062 14 C 0.282 3.718 15 O -0.492 6.492 16 C -0.167 4.167 17 C 0.040 3.960 18 N -0.386 5.386 19 C 0.396 3.604 20 O -0.516 6.516 21 N -0.360 5.360 22 C -0.072 4.072 23 C 0.049 3.951 24 C -0.118 4.118 25 C -0.121 4.121 26 C -0.145 4.145 27 C -0.142 4.142 28 C -0.159 4.159 29 C -0.139 4.139 30 H 0.038 0.962 31 H 0.070 0.930 32 H 0.084 0.916 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.087 0.913 36 H 0.122 0.878 37 H 0.152 0.848 38 H 0.147 0.853 39 H 0.061 0.939 40 H 0.062 0.938 41 H 0.254 0.746 42 H 0.094 0.906 43 H 0.114 0.886 44 H 0.096 0.904 45 H 0.084 0.916 46 H 0.140 0.860 47 H 0.170 0.830 48 H 0.167 0.833 49 H 0.157 0.843 50 H 0.140 0.860 51 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 7.437 -11.368 -29.596 32.565 hybrid contribution -0.025 0.310 1.467 1.499 sum 7.412 -11.057 -28.129 31.120 Atomic orbital electron populations 1.21874 0.97113 1.00236 0.99876 1.18524 0.91681 0.92157 0.81996 0.97756 1.21554 1.31824 1.13039 0.91068 0.91906 1.25791 0.95173 0.95707 1.02201 1.70024 1.37370 1.23959 1.24428 0.85491 0.78323 0.79049 0.78032 1.20372 1.21131 1.18429 1.48243 1.48921 1.13666 1.22226 1.21893 1.01575 0.79945 1.02796 1.21191 0.78416 0.86644 0.85526 1.90672 1.60106 1.20057 1.78365 1.21716 1.02322 0.99395 0.93243 1.20520 0.96818 0.94201 0.84511 1.44928 1.54303 1.16297 1.23060 1.16159 0.79188 0.84331 0.80730 1.90903 1.64255 1.17860 1.78535 1.47091 1.54227 1.13652 1.20989 1.22072 1.01555 0.79073 1.04483 1.20305 0.90621 0.96826 0.87394 1.20388 1.00363 0.94338 0.96662 1.21348 0.97643 1.00544 0.92609 1.21515 0.97640 0.95169 1.00157 1.21477 0.99874 0.95623 0.97247 1.21362 0.98872 1.00701 0.94964 1.21242 0.98067 0.96114 0.98491 0.96160 0.93031 0.91607 0.92720 0.92333 0.91343 0.87832 0.84791 0.85256 0.93907 0.93831 0.74619 0.90646 0.88589 0.90421 0.91620 0.85955 0.83019 0.83325 0.84301 0.86030 0.88369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.39 8.95 71.98 0.64 -5.75 16 2 C 0.26 13.54 2.64 44.24 0.12 13.66 16 3 H 0.00 0.28 6.90 -2.39 -0.02 0.27 16 4 C -0.54 -29.15 8.37 25.60 0.21 -28.94 16 5 H 0.06 3.27 7.65 -2.91 -0.02 3.25 16 6 C 0.01 0.59 5.30 84.66 0.45 1.04 16 7 N -0.92 -53.75 11.32 21.45 0.24 -53.50 16 8 Si 0.97 43.23 29.54 68.60 2.03 45.25 16 9 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 10 H -0.29 -12.66 7.11 99.48 0.71 -11.96 16 11 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 12 N -0.60 -24.49 2.75 -826.78 -2.28 -26.76 16 13 C 0.08 2.23 9.48 127.77 1.21 3.44 16 14 C 0.49 19.79 7.67 87.65 0.67 20.46 16 15 O -0.61 -31.81 15.31 -3.02 -0.05 -31.86 16 16 C -0.13 -3.09 4.37 29.85 0.13 -2.96 16 17 C 0.17 4.87 4.96 86.38 0.43 5.30 16 18 N -0.73 -15.74 5.42 -478.53 -2.59 -18.34 16 19 C 0.69 18.46 8.28 179.05 1.48 19.94 16 20 O -0.63 -23.75 15.45 -3.97 -0.06 -23.81 16 21 N -0.62 -10.73 2.86 -869.31 -2.48 -13.21 16 22 C 0.07 0.47 10.20 127.77 1.30 1.78 16 23 C 0.17 2.82 5.53 85.63 0.47 3.29 16 24 C -0.12 -2.10 5.46 -19.87 -0.11 -2.20 16 25 C -0.10 -1.27 9.70 22.27 0.22 -1.05 16 26 C -0.13 -1.56 10.05 22.27 0.22 -1.33 16 27 C -0.12 -1.90 10.05 22.27 0.22 -1.68 16 28 C -0.14 -2.85 10.05 22.27 0.22 -2.63 16 29 C -0.12 -2.83 9.70 22.27 0.22 -2.62 16 30 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.05 2.21 6.66 -2.39 -0.02 2.19 16 32 H 0.07 3.56 6.07 -2.39 -0.01 3.54 16 33 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 34 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.07 1.99 6.43 -2.38 -0.02 1.98 16 36 H 0.10 1.81 6.44 -2.39 -0.02 1.79 16 37 H 0.13 2.21 7.40 -2.39 -0.02 2.19 16 38 H 0.13 2.32 8.11 -2.39 -0.02 2.30 16 39 H 0.04 1.55 8.10 -2.39 -0.02 1.53 16 40 H 0.04 1.55 8.10 -2.38 -0.02 1.53 16 41 H 0.41 5.17 6.20 -92.71 -0.58 4.59 16 42 H 0.08 0.31 8.14 -2.39 -0.02 0.29 16 43 H 0.10 0.26 8.07 -2.39 -0.02 0.24 16 44 H 0.08 0.38 6.36 -2.38 -0.02 0.36 16 45 H 0.07 1.46 7.36 -2.39 -0.02 1.44 16 46 H 0.12 1.04 8.01 -2.38 -0.02 1.02 16 47 H 0.15 0.82 8.06 -2.91 -0.02 0.80 16 48 H 0.15 0.95 8.06 -2.91 -0.02 0.93 16 49 H 0.14 1.49 8.06 -2.91 -0.02 1.46 16 50 H 0.12 2.25 8.06 -2.91 -0.02 2.23 16 51 H 0.10 2.86 7.58 -2.91 -0.02 2.84 16 Total: -1.00 -86.48 415.14 3.28 -83.19 By element: Atomic # 1 Polarization: 18.93 SS G_CDS: 0.35 Total: 19.28 kcal Atomic # 6 Polarization: 11.63 SS G_CDS: 8.12 Total: 19.75 kcal Atomic # 7 Polarization: -104.70 SS G_CDS: -7.11 Total: -111.81 kcal Atomic # 8 Polarization: -55.56 SS G_CDS: -0.11 Total: -55.67 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.25 kcal Total: -86.48 3.28 -83.19 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067300994.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.407 kcal (2) G-P(sol) polarization free energy of solvation -86.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds