Wall clock time and date at job start Wed Apr 1 2020 04:51:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.47057 * 2 1 4 4 C 1.50696 * 109.47712 * 239.99735 * 2 1 3 5 5 H 1.07999 * 120.00319 * 240.00495 * 4 2 1 6 6 C 1.37885 * 119.99717 * 59.99878 * 4 2 1 7 7 N 1.31516 * 119.99913 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46506 * 109.47074 * 119.99711 * 2 1 3 13 13 C 1.46502 * 119.99912 * 60.00021 * 12 2 1 14 14 C 1.34775 * 120.00185 * 240.00282 * 12 2 1 15 15 O 1.21286 * 119.99739 * 359.97438 * 14 12 2 16 16 C 1.50697 * 120.00215 * 179.97438 * 14 12 2 17 17 C 1.52996 * 109.47364 * 179.97438 * 16 14 12 18 18 N 1.46497 * 109.46960 * 179.97438 * 17 16 14 19 19 C 1.34782 * 119.99631 * 180.02562 * 18 17 16 20 20 O 1.21585 * 120.00445 * 0.02562 * 19 18 17 21 21 N 1.34778 * 119.99807 * 179.97438 * 19 18 17 22 22 C 1.46502 * 120.00110 * 0.02562 * 21 19 18 23 23 C 1.46498 * 120.00178 * 180.02562 * 21 19 18 24 24 C 1.50699 * 109.47390 * 89.99812 * 23 21 19 25 25 C 1.38237 * 120.00152 * 269.73392 * 24 23 21 26 26 C 1.38244 * 119.99869 * 179.76516 * 25 24 23 27 27 C 1.38234 * 119.99614 * 0.50114 * 26 25 24 28 28 C 1.38233 * 120.00340 * 359.74959 * 27 26 25 29 29 C 1.38234 * 119.99881 * 90.00039 * 24 23 21 30 30 H 1.08996 * 109.47024 * 300.00143 * 1 2 3 31 31 H 1.08998 * 109.46637 * 59.99843 * 1 2 3 32 32 H 1.08997 * 109.46749 * 180.02562 * 1 2 3 33 33 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 34 34 H 1.09005 * 109.46997 * 89.99685 * 13 12 2 35 35 H 1.08997 * 109.47497 * 210.00034 * 13 12 2 36 36 H 1.09004 * 109.47127 * 330.00532 * 13 12 2 37 37 H 1.08999 * 109.46995 * 300.00028 * 16 14 12 38 38 H 1.09000 * 109.47262 * 59.99668 * 16 14 12 39 39 H 1.08999 * 109.47336 * 300.00124 * 17 16 14 40 40 H 1.08999 * 109.47211 * 60.00263 * 17 16 14 41 41 H 0.96999 * 120.00688 * 359.97438 * 18 17 16 42 42 H 1.08995 * 109.47116 * 90.00041 * 22 21 19 43 43 H 1.09000 * 109.47149 * 210.00232 * 22 21 19 44 44 H 1.09000 * 109.47126 * 329.99581 * 22 21 19 45 45 H 1.08996 * 109.47616 * 210.00038 * 23 21 19 46 46 H 1.09001 * 109.47243 * 330.00484 * 23 21 19 47 47 H 1.07995 * 119.99980 * 359.97438 * 25 24 23 48 48 H 1.07996 * 120.00029 * 180.22953 * 26 25 24 49 49 H 1.08002 * 119.99491 * 179.72361 * 27 26 25 50 50 H 1.08003 * 119.99741 * 179.97438 * 28 27 26 51 51 H 1.08001 * 120.00084 * 0.02562 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7104 -1.2303 5 1 2.6533 -1.5885 -1.1312 6 6 1.6994 -0.2394 -2.4827 7 7 2.1375 -0.8596 -3.5565 8 14 0.6260 1.2797 -2.6541 9 1 -0.8019 0.8744 -2.6994 10 1 0.8491 2.1773 -1.4922 11 1 0.9774 1.9953 -3.9070 12 7 2.0183 -0.6906 1.1963 13 6 1.6644 -2.0932 1.4281 14 6 2.7931 -0.0356 2.0834 15 8 3.0865 1.1255 1.8912 16 6 3.2950 -0.7457 3.3142 17 6 4.1455 0.2157 4.1467 18 7 4.6328 -0.4746 5.3434 19 6 5.4076 0.1805 6.2307 20 8 5.7017 1.3445 6.0381 21 7 5.8555 -0.4543 7.3320 22 6 5.5007 -1.8566 7.5643 23 6 6.6971 0.2578 8.2967 24 6 5.8252 0.9132 9.3365 25 6 5.3675 2.2029 9.1416 26 6 4.5636 2.8023 10.0933 27 6 4.2261 2.1157 11.2445 28 6 4.6880 0.8278 11.4418 29 6 5.4876 0.2266 10.4878 30 1 -0.3633 0.5138 0.8899 31 1 -0.3632 0.5139 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.9028 -0.5285 -4.4375 34 1 2.4157 -2.7377 0.9718 35 1 1.6237 -2.2852 2.5003 36 1 0.6904 -2.3002 0.9847 37 1 2.4470 -1.0879 3.9074 38 1 3.9003 -1.6024 3.0180 39 1 4.9935 0.5575 3.5533 40 1 3.5405 1.0726 4.4430 41 1 4.3974 -1.4028 5.4977 42 1 6.2522 -2.5017 7.1092 43 1 5.4589 -2.0479 8.6366 44 1 4.5270 -2.0635 7.1202 45 1 7.3719 -0.4480 8.7809 46 1 7.2792 1.0197 7.7782 47 1 5.6351 2.7411 8.2443 48 1 4.2030 3.8086 9.9393 49 1 3.6017 2.5856 11.9900 50 1 4.4245 0.2915 12.3415 51 1 5.8490 -0.7794 10.6423 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000067300997.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:59 Heat of formation + Delta-G solvation = -46.650630 kcal Electronic energy + Delta-G solvation = -29994.166830 eV Core-core repulsion = 25893.297127 eV Total energy + Delta-G solvation = -4100.869703 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.43833 -40.82854 -39.89747 -37.43001 -36.71253 -36.21602 -34.79209 -33.17047 -32.45840 -31.76962 -30.98813 -28.21583 -27.66637 -27.16152 -26.85916 -24.93554 -23.42714 -22.69132 -22.36883 -21.14506 -19.86447 -19.00439 -18.90979 -18.10373 -17.80843 -17.45309 -17.13270 -17.03495 -16.57496 -16.14782 -15.95813 -15.89815 -15.27618 -15.12547 -14.92504 -14.79319 -14.50813 -14.29353 -14.17388 -14.08079 -13.75094 -13.69626 -13.54682 -13.46336 -13.33741 -13.17883 -13.03362 -12.78484 -12.69038 -12.52459 -12.41085 -12.10914 -12.05407 -11.84610 -11.59870 -11.36710 -11.32838 -10.80702 -10.69694 -10.26343 -9.81024 -9.75657 -9.51081 -9.39008 -8.36078 -6.39895 0.35723 0.51105 1.24229 1.34845 1.43042 1.60293 1.74644 2.12584 2.26534 2.32222 2.86813 2.99408 3.10951 3.65366 3.87520 3.89123 3.92242 4.07033 4.16974 4.27584 4.30520 4.31516 4.35922 4.46051 4.52993 4.60024 4.62342 4.63477 4.66765 4.75052 4.77595 4.81135 4.89033 4.92421 4.94566 5.00628 5.11333 5.12792 5.16836 5.32597 5.41033 5.48513 5.49560 5.56881 5.63428 5.70424 5.72494 5.92498 6.12922 6.19589 6.62173 6.74255 6.96038 7.21207 7.37523 7.55494 8.79752 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.021073 B = 0.001849 C = 0.001801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.425279 B =15137.140324 C =15544.594715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.228 3.772 3 H 0.027 0.973 4 C -0.523 4.523 5 H 0.047 0.953 6 C 0.021 3.979 7 N -0.938 5.938 8 Si 0.940 3.060 9 H -0.252 1.252 10 H -0.266 1.266 11 H -0.297 1.297 12 N -0.595 5.595 13 C 0.080 3.920 14 C 0.498 3.502 15 O -0.604 6.604 16 C -0.128 4.128 17 C 0.164 3.836 18 N -0.728 5.728 19 C 0.695 3.305 20 O -0.634 6.634 21 N -0.624 5.624 22 C 0.070 3.930 23 C 0.171 3.829 24 C -0.116 4.116 25 C -0.120 4.120 26 C -0.141 4.141 27 C -0.124 4.124 28 C -0.127 4.127 29 C -0.103 4.103 30 H 0.056 0.944 31 H 0.039 0.961 32 H 0.074 0.926 33 H 0.268 0.732 34 H 0.049 0.951 35 H 0.110 0.890 36 H 0.073 0.927 37 H 0.139 0.861 38 H 0.127 0.873 39 H 0.042 0.958 40 H 0.047 0.953 41 H 0.414 0.586 42 H 0.074 0.926 43 H 0.095 0.905 44 H 0.078 0.922 45 H 0.121 0.879 46 H 0.065 0.935 47 H 0.099 0.901 48 H 0.122 0.878 49 H 0.139 0.861 50 H 0.149 0.851 51 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.228 -7.519 33.847 34.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.124 3.876 3 H 0.045 0.955 4 C -0.562 4.562 5 H 0.066 0.934 6 C -0.178 4.178 7 N -0.578 5.578 8 Si 0.767 3.233 9 H -0.177 1.177 10 H -0.191 1.191 11 H -0.225 1.225 12 N -0.325 5.325 13 C -0.062 4.062 14 C 0.287 3.713 15 O -0.486 6.486 16 C -0.168 4.168 17 C 0.039 3.961 18 N -0.386 5.386 19 C 0.396 3.604 20 O -0.515 6.515 21 N -0.360 5.360 22 C -0.072 4.072 23 C 0.048 3.952 24 C -0.117 4.117 25 C -0.139 4.139 26 C -0.159 4.159 27 C -0.142 4.142 28 C -0.145 4.145 29 C -0.122 4.122 30 H 0.075 0.925 31 H 0.058 0.942 32 H 0.093 0.907 33 H 0.077 0.923 34 H 0.068 0.932 35 H 0.128 0.872 36 H 0.091 0.909 37 H 0.156 0.844 38 H 0.145 0.855 39 H 0.060 0.940 40 H 0.066 0.934 41 H 0.254 0.746 42 H 0.093 0.907 43 H 0.114 0.886 44 H 0.097 0.903 45 H 0.139 0.861 46 H 0.084 0.916 47 H 0.117 0.883 48 H 0.140 0.860 49 H 0.157 0.843 50 H 0.166 0.834 51 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 3.577 -6.169 33.388 34.141 hybrid contribution -0.377 0.817 -1.218 1.515 sum 3.201 -5.352 32.169 32.768 Atomic orbital electron populations 1.22303 0.96510 1.02437 0.99853 1.18959 0.91908 0.93366 0.83327 0.95533 1.21366 1.31591 1.13064 0.90134 0.93449 1.25648 0.97250 0.99396 0.95476 1.69998 1.47135 1.42104 0.98551 0.85997 0.80036 0.80290 0.76946 1.17705 1.19063 1.22478 1.47945 1.49320 1.13676 1.21596 1.21917 1.01601 0.79640 1.03035 1.21164 0.78018 0.86631 0.85447 1.90673 1.59731 1.19862 1.78337 1.21725 1.02486 0.99387 0.93214 1.20537 0.96866 0.94243 0.84477 1.44934 1.54344 1.16342 1.23029 1.16155 0.79180 0.84338 0.80717 1.90902 1.64230 1.17818 1.78547 1.47091 1.54276 1.13655 1.20960 1.22068 1.01553 0.79102 1.04468 1.20300 0.90642 0.96809 0.87409 1.20383 1.00357 0.94335 0.96661 1.21240 0.98022 0.96068 0.98528 1.21363 0.98819 1.00712 0.94967 1.21475 0.99880 0.95615 0.97253 1.21511 0.97679 0.95184 1.00117 1.21344 0.97661 1.00531 0.92641 0.92524 0.94226 0.90691 0.92308 0.93219 0.87221 0.90862 0.84368 0.85522 0.93956 0.93450 0.74634 0.90743 0.88611 0.90350 0.86056 0.91600 0.88306 0.85973 0.84304 0.83366 0.83093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.22 8.65 71.98 0.62 -5.60 16 2 C 0.23 10.90 2.23 44.24 0.10 11.00 16 3 H 0.03 1.47 5.96 -2.38 -0.01 1.46 16 4 C -0.52 -29.25 8.95 25.60 0.23 -29.02 16 5 H 0.05 2.87 7.89 -2.91 -0.02 2.85 16 6 C 0.02 1.22 5.45 84.66 0.46 1.68 16 7 N -0.94 -57.68 13.96 21.45 0.30 -57.38 16 8 Si 0.94 45.64 24.37 68.60 1.67 47.31 16 9 H -0.25 -11.12 6.87 99.48 0.68 -10.44 16 10 H -0.27 -12.92 6.53 99.48 0.65 -12.27 16 11 H -0.30 -14.46 7.11 99.48 0.71 -13.75 16 12 N -0.60 -22.78 2.75 -826.77 -2.28 -25.06 16 13 C 0.08 2.15 9.48 127.77 1.21 3.36 16 14 C 0.50 18.63 7.67 87.66 0.67 19.30 16 15 O -0.60 -29.24 15.31 -3.05 -0.05 -29.28 16 16 C -0.13 -2.90 4.37 29.85 0.13 -2.77 16 17 C 0.16 4.58 4.96 86.38 0.43 5.01 16 18 N -0.73 -15.01 5.42 -478.54 -2.59 -17.61 16 19 C 0.70 17.88 8.28 179.05 1.48 19.36 16 20 O -0.63 -23.07 15.47 -3.98 -0.06 -23.13 16 21 N -0.62 -10.40 2.86 -869.32 -2.48 -12.88 16 22 C 0.07 0.45 10.20 127.77 1.30 1.75 16 23 C 0.17 2.74 5.53 85.63 0.47 3.21 16 24 C -0.12 -2.03 5.46 -19.87 -0.11 -2.14 16 25 C -0.12 -2.72 9.70 22.27 0.22 -2.51 16 26 C -0.14 -2.73 10.05 22.27 0.22 -2.50 16 27 C -0.12 -1.82 10.05 22.27 0.22 -1.60 16 28 C -0.13 -1.49 10.05 22.27 0.22 -1.27 16 29 C -0.10 -1.23 9.70 22.27 0.22 -1.01 16 30 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.04 1.69 3.27 -2.39 -0.01 1.68 16 32 H 0.07 2.73 6.66 -2.39 -0.02 2.71 16 33 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 34 H 0.05 1.40 8.14 -2.38 -0.02 1.38 16 35 H 0.11 1.73 6.44 -2.39 -0.02 1.72 16 36 H 0.07 2.00 6.43 -2.38 -0.02 1.98 16 37 H 0.14 1.97 7.40 -2.39 -0.02 1.95 16 38 H 0.13 2.20 8.11 -2.39 -0.02 2.18 16 39 H 0.04 1.47 8.10 -2.39 -0.02 1.45 16 40 H 0.05 1.58 8.10 -2.39 -0.02 1.56 16 41 H 0.41 4.83 6.20 -92.71 -0.58 4.26 16 42 H 0.07 0.30 8.14 -2.39 -0.02 0.28 16 43 H 0.10 0.23 8.07 -2.39 -0.02 0.22 16 44 H 0.08 0.34 6.36 -2.39 -0.02 0.32 16 45 H 0.12 1.01 8.02 -2.39 -0.02 0.99 16 46 H 0.07 1.43 7.36 -2.39 -0.02 1.41 16 47 H 0.10 2.78 7.60 -2.91 -0.02 2.76 16 48 H 0.12 2.15 8.06 -2.91 -0.02 2.13 16 49 H 0.14 1.40 8.06 -2.91 -0.02 1.37 16 50 H 0.15 0.89 8.06 -2.91 -0.02 0.86 16 51 H 0.15 0.77 8.06 -2.91 -0.02 0.75 16 Total: -1.00 -88.17 408.37 2.90 -85.27 By element: Atomic # 1 Polarization: 16.23 SS G_CDS: 0.28 Total: 16.51 kcal Atomic # 6 Polarization: 8.14 SS G_CDS: 8.11 Total: 16.25 kcal Atomic # 7 Polarization: -105.87 SS G_CDS: -7.05 Total: -112.92 kcal Atomic # 8 Polarization: -52.31 SS G_CDS: -0.11 Total: -52.42 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 1.67 Total: 47.31 kcal Total: -88.17 2.90 -85.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067300997.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.617 kcal (2) G-P(sol) polarization free energy of solvation -88.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds