Wall clock time and date at job start Wed Apr 1 2020 04:50:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08991 * 109.46960 * 2 1 4 4 C 1.53003 * 109.47182 * 240.00033 * 2 1 3 5 5 H 1.09004 * 109.47241 * 300.00123 * 4 2 1 6 6 C 1.52996 * 109.47291 * 179.97438 * 4 2 1 7 7 N 1.46499 * 109.46961 * 59.99644 * 4 2 1 8 8 C 1.34778 * 120.00236 * 204.99920 * 7 4 2 9 9 O 1.21582 * 119.99751 * 0.02562 * 8 7 4 10 10 N 1.34776 * 119.99782 * 180.02562 * 8 7 4 11 11 C 1.39247 * 119.99592 * 175.50474 * 10 8 7 12 12 C 1.39482 * 119.82975 * 215.66258 * 11 10 8 13 13 C 1.36380 * 120.16446 * 180.27222 * 12 11 10 14 14 C 1.40871 * 119.82872 * 0.02996 * 13 12 11 15 15 C 1.41161 * 120.16039 * 179.97438 * 14 13 12 16 16 H 1.07992 * 119.99899 * 205.51586 * 15 14 13 17 17 C 1.39892 * 119.99767 * 25.52185 * 15 14 13 18 18 N 1.30880 * 120.00574 * 17.04943 * 17 15 14 19 19 Si 1.86803 * 119.99766 * 197.04778 * 17 15 14 20 20 H 1.48494 * 109.47191 * 59.99983 * 19 17 15 21 21 H 1.48501 * 109.47371 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47071 * 300.00056 * 19 17 15 23 23 C 1.40860 * 119.67377 * 359.97191 * 14 13 12 24 24 C 1.36374 * 119.82966 * 359.97438 * 23 14 13 25 25 N 1.46901 * 109.47106 * 120.00323 * 2 1 3 26 26 C 1.47006 * 111.00321 * 58.63682 * 25 2 1 27 27 C 1.53096 * 109.26174 * 177.60811 * 26 25 2 28 28 O 1.43013 * 109.25961 * 56.84393 * 27 26 25 29 29 C 1.43022 * 113.73960 * 301.33686 * 28 27 26 30 30 C 1.47019 * 110.99850 * 294.99769 * 25 2 1 31 31 H 1.08992 * 109.47391 * 60.00269 * 1 2 3 32 32 H 1.09008 * 109.46789 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47404 * 299.99481 * 1 2 3 34 34 H 1.09002 * 109.47168 * 59.99914 * 6 4 2 35 35 H 1.08996 * 109.47094 * 180.02562 * 6 4 2 36 36 H 1.09004 * 109.47344 * 300.00385 * 6 4 2 37 37 H 0.97006 * 120.00153 * 25.00004 * 7 4 2 38 38 H 0.96998 * 120.00364 * 355.50049 * 10 8 7 39 39 H 1.08000 * 119.91893 * 0.27595 * 12 11 10 40 40 H 1.07997 * 120.08169 * 179.97438 * 13 12 11 41 41 H 0.96999 * 120.00461 * 179.97438 * 18 17 15 42 42 H 1.07999 * 120.08808 * 179.97438 * 23 14 13 43 43 H 1.08003 * 119.91979 * 179.97438 * 24 23 14 44 44 H 1.09001 * 109.50556 * 297.54143 * 26 25 2 45 45 H 1.09002 * 109.51012 * 57.66733 * 26 25 2 46 46 H 1.09003 * 109.50523 * 296.91688 * 27 26 25 47 47 H 1.08997 * 109.54826 * 176.80335 * 27 26 25 48 48 H 1.08996 * 109.50076 * 298.73249 * 29 28 27 49 49 H 1.08996 * 109.54285 * 178.62328 * 29 28 27 50 50 H 1.09002 * 109.50745 * 302.33235 * 30 25 2 51 51 H 1.09001 * 109.50299 * 62.41543 * 30 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 1 1.6767 -1.7490 -1.2493 6 6 3.5700 -0.7207 -1.2496 7 7 1.5516 -0.0307 -2.4454 8 6 1.4229 -0.7030 -3.6064 9 8 1.7117 -1.8827 -3.6609 10 7 0.9740 -0.0674 -4.7069 11 6 0.9295 -0.7361 -5.9275 12 6 1.2036 -0.0450 -7.1076 13 6 1.1565 -0.6919 -8.3074 14 6 0.8295 -2.0613 -8.3527 15 6 0.7783 -2.7377 -9.5906 16 1 0.1598 -3.6161 -9.7008 17 6 1.5287 -2.2701 -10.6747 18 7 2.5158 -1.4341 -10.4754 19 14 1.1220 -2.8390 -12.4069 20 1 -0.2717 -2.4504 -12.7411 21 1 2.0578 -2.2038 -13.3691 22 1 1.2570 -4.3157 -12.4873 23 6 0.5540 -2.7524 -7.1566 24 6 0.6061 -2.0924 -5.9643 25 7 2.0197 -0.6926 1.1994 26 6 1.5219 -2.0749 1.2498 27 6 2.1027 -2.7763 2.4804 28 8 1.7583 -2.0337 3.6531 29 6 2.2281 -0.6829 3.6379 30 6 1.6484 0.0397 2.4190 31 1 -0.3634 0.5137 -0.8899 32 1 -0.3633 -1.0278 0.0005 33 1 -0.3634 0.5137 0.8900 34 1 3.9337 -1.2343 -0.3596 35 1 3.9333 -1.2341 -2.1398 36 1 3.9330 0.3071 -1.2498 37 1 1.3209 0.9105 -2.4019 38 1 0.6820 0.8557 -4.6487 39 1 1.4537 1.0050 -7.0713 40 1 1.3685 -0.1553 -9.2203 41 1 3.0364 -1.1102 -11.2270 42 1 0.3022 -3.8023 -7.1836 43 1 0.3947 -2.6208 -5.0464 44 1 0.4338 -2.0677 1.3147 45 1 1.8299 -2.6058 0.3490 46 1 3.1876 -2.8310 2.3900 47 1 1.6924 -3.7834 2.5538 48 1 3.3166 -0.6769 3.5810 49 1 1.9083 -0.1754 4.5479 50 1 2.0489 1.0523 2.3717 51 1 0.5624 0.0813 2.5021 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104985765.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:50:25 Heat of formation + Delta-G solvation = -40.273507 kcal Electronic energy + Delta-G solvation = -30563.771297 eV Core-core repulsion = 26463.178127 eV Total energy + Delta-G solvation = -4100.593170 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.54024 -39.71962 -37.86360 -37.01489 -34.79480 -34.21962 -32.96276 -31.60759 -31.01681 -29.90639 -29.46614 -28.58223 -26.85164 -24.97226 -24.50543 -23.73558 -21.98718 -21.24348 -20.72463 -20.12123 -19.75213 -18.07855 -17.27131 -16.96670 -16.64217 -16.34089 -15.61036 -15.48360 -15.22509 -15.17610 -14.93022 -14.79912 -14.15192 -14.13284 -13.89340 -13.61617 -13.53533 -13.01364 -12.65868 -12.61430 -12.45332 -12.33302 -12.05765 -12.03940 -11.82030 -11.76381 -11.51351 -11.42590 -11.26376 -11.07537 -10.99746 -10.88581 -10.71911 -10.63522 -10.06964 -10.00970 -9.55332 -9.43892 -9.14215 -8.90033 -8.85703 -8.67752 -7.49160 -6.92963 -6.70242 -4.25978 2.70074 2.90750 3.07980 3.10549 3.13802 3.20573 3.47083 3.58857 3.76616 3.95655 4.29621 4.52957 4.55778 4.66741 4.68714 4.75034 4.79383 4.82636 4.91971 4.97077 5.15753 5.27103 5.28840 5.34870 5.40594 5.50573 5.55525 5.58793 5.62949 5.73123 5.86355 5.87873 6.02040 6.23475 6.31951 6.48729 6.53854 6.58616 6.72527 6.79205 6.82641 6.89535 7.08361 7.16518 7.32758 7.41156 7.65968 7.92435 8.01423 8.09558 8.33355 8.53612 8.64225 8.92660 8.96353 9.16376 10.21944 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.031436 B = 0.001812 C = 0.001781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.483568 B =15447.852601 C =15720.038131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.075 3.925 3 H 0.088 0.912 4 C 0.170 3.830 5 H 0.087 0.913 6 C -0.154 4.154 7 N -0.748 5.748 8 C 0.696 3.304 9 O -0.577 6.577 10 N -0.667 5.667 11 C 0.011 3.989 12 C -0.115 4.115 13 C -0.153 4.153 14 C 0.104 3.896 15 C -0.460 4.460 16 H 0.077 0.923 17 C 0.074 3.926 18 N -0.795 5.795 19 Si 0.908 3.092 20 H -0.264 1.264 21 H -0.279 1.279 22 H -0.266 1.266 23 C -0.216 4.216 24 C -0.076 4.076 25 N -0.522 5.522 26 C 0.007 3.993 27 C 0.064 3.936 28 O -0.387 6.387 29 C 0.064 3.936 30 C 0.016 3.984 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.056 0.944 34 H 0.071 0.929 35 H 0.059 0.941 36 H 0.050 0.950 37 H 0.389 0.611 38 H 0.390 0.610 39 H 0.089 0.911 40 H 0.120 0.880 41 H 0.280 0.720 42 H 0.094 0.906 43 H 0.107 0.893 44 H 0.049 0.951 45 H 0.094 0.906 46 H 0.060 0.940 47 H 0.098 0.902 48 H 0.059 0.941 49 H 0.096 0.904 50 H 0.085 0.915 51 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.928 6.844 22.935 23.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.034 4.034 3 H 0.106 0.894 4 C 0.064 3.936 5 H 0.105 0.895 6 C -0.213 4.213 7 N -0.405 5.405 8 C 0.397 3.603 9 O -0.454 6.454 10 N -0.312 5.312 11 C -0.082 4.082 12 C -0.136 4.136 13 C -0.173 4.173 14 C 0.102 3.898 15 C -0.489 4.489 16 H 0.095 0.905 17 C -0.143 4.143 18 N -0.420 5.420 19 Si 0.733 3.267 20 H -0.189 1.189 21 H -0.204 1.204 22 H -0.190 1.190 23 C -0.236 4.236 24 C -0.096 4.096 25 N -0.246 5.246 26 C -0.121 4.121 27 C -0.013 4.013 28 O -0.306 6.306 29 C -0.013 4.013 30 C -0.112 4.112 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.090 0.910 35 H 0.078 0.922 36 H 0.069 0.931 37 H 0.223 0.777 38 H 0.223 0.777 39 H 0.107 0.893 40 H 0.138 0.862 41 H 0.091 0.909 42 H 0.112 0.888 43 H 0.125 0.875 44 H 0.067 0.933 45 H 0.112 0.888 46 H 0.079 0.921 47 H 0.116 0.884 48 H 0.078 0.922 49 H 0.114 0.886 50 H 0.104 0.896 51 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -0.026 5.762 22.900 23.613 hybrid contribution -0.985 0.987 -1.030 1.733 sum -1.011 6.749 21.870 22.910 Atomic orbital electron populations 1.22448 0.96842 1.02850 1.02368 1.21939 0.93209 0.98463 0.89766 0.89398 1.20650 0.94449 0.96755 0.81700 0.89471 1.22080 0.94768 1.01851 1.02554 1.45135 1.73003 1.13177 1.09148 1.15990 0.78629 0.85440 0.80222 1.90902 1.56595 1.14072 1.83844 1.42085 1.66802 1.15305 1.07044 1.16965 1.15546 0.93282 0.82395 1.20212 1.03120 0.97832 0.92408 1.20863 1.05853 0.94649 0.95947 1.17656 0.88545 0.91437 0.92192 1.19505 1.23663 1.11265 0.94492 0.90473 1.25909 0.93225 0.93818 1.01336 1.69842 1.13086 1.25568 1.33549 0.86367 0.79416 0.79855 0.81062 1.18867 1.20405 1.19037 1.20665 1.12621 0.98236 0.92121 1.20384 0.98847 0.93041 0.97368 1.62361 1.58791 1.02046 1.01441 1.22947 0.98853 0.90072 1.00261 1.22684 0.99962 0.94962 0.83668 1.87987 1.78606 1.23644 1.40336 1.22645 0.98797 0.82527 0.97310 1.22809 0.99488 0.98481 0.90452 0.91456 0.91995 0.92457 0.90990 0.92197 0.93059 0.77750 0.77738 0.89325 0.86208 0.90886 0.88805 0.87532 0.93266 0.88822 0.92132 0.88377 0.92231 0.88602 0.89646 0.93510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.53 8.33 37.16 0.31 -1.22 16 2 C 0.08 0.62 1.98 -67.71 -0.13 0.49 16 3 H 0.09 0.65 8.12 -51.93 -0.42 0.23 16 4 C 0.17 1.90 1.83 -67.93 -0.12 1.78 16 5 H 0.09 1.17 5.82 -51.93 -0.30 0.87 16 6 C -0.15 -1.78 9.33 37.16 0.35 -1.43 16 7 N -0.75 -9.10 4.39 -58.68 -0.26 -9.36 16 8 C 0.70 12.22 8.36 -86.92 -0.73 11.49 16 9 O -0.58 -12.69 13.45 5.29 0.07 -12.61 16 10 N -0.67 -11.76 5.31 -14.10 -0.07 -11.84 16 11 C 0.01 0.24 6.30 -83.57 -0.53 -0.28 16 12 C -0.12 -2.66 9.90 -39.79 -0.39 -3.05 16 13 C -0.15 -3.97 8.63 -39.26 -0.34 -4.31 16 14 C 0.10 2.83 5.57 -106.80 -0.59 2.24 16 15 C -0.46 -12.34 9.04 -37.85 -0.34 -12.68 16 16 H 0.08 1.99 7.90 -52.49 -0.41 1.57 16 17 C 0.07 1.89 5.14 -17.34 -0.09 1.80 16 18 N -0.79 -20.71 10.97 55.54 0.61 -20.10 16 19 Si 0.91 18.78 29.59 -169.99 -5.03 13.75 16 20 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 21 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 22 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 23 C -0.22 -5.59 9.74 -39.26 -0.38 -5.97 16 24 C -0.08 -1.87 8.61 -39.79 -0.34 -2.21 16 25 N -0.52 -4.23 3.95 -226.34 -0.89 -5.12 16 26 C 0.01 0.06 4.86 -3.72 -0.02 0.04 16 27 C 0.06 0.52 7.01 37.21 0.26 0.78 16 28 O -0.39 -3.60 10.83 -35.23 -0.38 -3.98 16 29 C 0.06 0.44 7.01 37.21 0.26 0.70 16 30 C 0.02 0.11 5.31 -3.71 -0.02 0.09 16 31 H 0.07 0.56 7.44 -51.93 -0.39 0.17 16 32 H 0.06 0.59 6.43 -51.92 -0.33 0.25 16 33 H 0.06 0.42 6.58 -51.93 -0.34 0.08 16 34 H 0.07 0.76 7.60 -51.93 -0.39 0.37 16 35 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.39 3.55 8.41 -40.82 -0.34 3.21 16 38 H 0.39 5.34 8.83 -40.82 -0.36 4.98 16 39 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 40 H 0.12 3.17 6.20 -52.49 -0.33 2.85 16 41 H 0.28 6.65 8.30 -40.82 -0.34 6.31 16 42 H 0.09 2.31 8.06 -52.49 -0.42 1.89 16 43 H 0.11 2.60 6.25 -52.48 -0.33 2.27 16 44 H 0.05 0.45 6.42 -51.93 -0.33 0.11 16 45 H 0.09 0.87 6.22 -51.93 -0.32 0.55 16 46 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 48 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 49 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 50 H 0.09 0.48 8.13 -51.93 -0.42 0.06 16 51 H 0.05 0.34 6.56 -51.93 -0.34 0.00 16 LS Contribution 396.92 15.07 5.98 5.98 Total: -1.00 -31.49 396.92 -10.72 -42.21 By element: Atomic # 1 Polarization: 20.69 SS G_CDS: -7.89 Total: 12.80 kcal Atomic # 6 Polarization: -8.89 SS G_CDS: -2.85 Total: -11.74 kcal Atomic # 7 Polarization: -45.80 SS G_CDS: -0.62 Total: -46.42 kcal Atomic # 8 Polarization: -16.28 SS G_CDS: -0.31 Total: -16.59 kcal Atomic # 14 Polarization: 18.78 SS G_CDS: -5.03 Total: 13.75 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -31.49 -10.72 -42.21 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104985765.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.939 kcal (2) G-P(sol) polarization free energy of solvation -31.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds