Wall clock time and date at job start Wed Apr 1 2020 04:50:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08991 * 109.46960 * 2 1 4 4 C 1.53003 * 109.47182 * 240.00033 * 2 1 3 5 5 H 1.09004 * 109.47241 * 300.00123 * 4 2 1 6 6 C 1.52996 * 109.47291 * 179.97438 * 4 2 1 7 7 N 1.46499 * 109.46961 * 59.99644 * 4 2 1 8 8 C 1.34778 * 120.00236 * 204.99920 * 7 4 2 9 9 O 1.21582 * 119.99751 * 0.02562 * 8 7 4 10 10 N 1.34776 * 119.99782 * 180.02562 * 8 7 4 11 11 C 1.39247 * 119.99592 * 175.50474 * 10 8 7 12 12 C 1.39482 * 119.82975 * 215.66258 * 11 10 8 13 13 C 1.36380 * 120.16446 * 180.27222 * 12 11 10 14 14 C 1.40871 * 119.82872 * 0.02996 * 13 12 11 15 15 C 1.41161 * 120.16039 * 179.97438 * 14 13 12 16 16 H 1.07992 * 119.99899 * 205.51586 * 15 14 13 17 17 C 1.39892 * 119.99767 * 25.52185 * 15 14 13 18 18 N 1.30880 * 120.00574 * 17.04943 * 17 15 14 19 19 Si 1.86803 * 119.99766 * 197.04778 * 17 15 14 20 20 H 1.48494 * 109.47191 * 59.99983 * 19 17 15 21 21 H 1.48501 * 109.47371 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47071 * 300.00056 * 19 17 15 23 23 C 1.40860 * 119.67377 * 359.97191 * 14 13 12 24 24 C 1.36374 * 119.82966 * 359.97438 * 23 14 13 25 25 N 1.46901 * 109.47106 * 120.00323 * 2 1 3 26 26 C 1.47006 * 111.00321 * 58.63682 * 25 2 1 27 27 C 1.53096 * 109.26174 * 177.60811 * 26 25 2 28 28 O 1.43013 * 109.25961 * 56.84393 * 27 26 25 29 29 C 1.43022 * 113.73960 * 301.33686 * 28 27 26 30 30 C 1.47019 * 110.99850 * 294.99769 * 25 2 1 31 31 H 1.08992 * 109.47391 * 60.00269 * 1 2 3 32 32 H 1.09008 * 109.46789 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47404 * 299.99481 * 1 2 3 34 34 H 1.09002 * 109.47168 * 59.99914 * 6 4 2 35 35 H 1.08996 * 109.47094 * 180.02562 * 6 4 2 36 36 H 1.09004 * 109.47344 * 300.00385 * 6 4 2 37 37 H 0.97006 * 120.00153 * 25.00004 * 7 4 2 38 38 H 0.96998 * 120.00364 * 355.50049 * 10 8 7 39 39 H 1.08000 * 119.91893 * 0.27595 * 12 11 10 40 40 H 1.07997 * 120.08169 * 179.97438 * 13 12 11 41 41 H 0.96999 * 120.00461 * 179.97438 * 18 17 15 42 42 H 1.07999 * 120.08808 * 179.97438 * 23 14 13 43 43 H 1.08003 * 119.91979 * 179.97438 * 24 23 14 44 44 H 1.09001 * 109.50556 * 297.54143 * 26 25 2 45 45 H 1.09002 * 109.51012 * 57.66733 * 26 25 2 46 46 H 1.09003 * 109.50523 * 296.91688 * 27 26 25 47 47 H 1.08997 * 109.54826 * 176.80335 * 27 26 25 48 48 H 1.08996 * 109.50076 * 298.73249 * 29 28 27 49 49 H 1.08996 * 109.54285 * 178.62328 * 29 28 27 50 50 H 1.09002 * 109.50745 * 302.33235 * 30 25 2 51 51 H 1.09001 * 109.50299 * 62.41543 * 30 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 1 1.6767 -1.7490 -1.2493 6 6 3.5700 -0.7207 -1.2496 7 7 1.5516 -0.0307 -2.4454 8 6 1.4229 -0.7030 -3.6064 9 8 1.7117 -1.8827 -3.6609 10 7 0.9740 -0.0674 -4.7069 11 6 0.9295 -0.7361 -5.9275 12 6 1.2036 -0.0450 -7.1076 13 6 1.1565 -0.6919 -8.3074 14 6 0.8295 -2.0613 -8.3527 15 6 0.7783 -2.7377 -9.5906 16 1 0.1598 -3.6161 -9.7008 17 6 1.5287 -2.2701 -10.6747 18 7 2.5158 -1.4341 -10.4754 19 14 1.1220 -2.8390 -12.4069 20 1 -0.2717 -2.4504 -12.7411 21 1 2.0578 -2.2038 -13.3691 22 1 1.2570 -4.3157 -12.4873 23 6 0.5540 -2.7524 -7.1566 24 6 0.6061 -2.0924 -5.9643 25 7 2.0197 -0.6926 1.1994 26 6 1.5219 -2.0749 1.2498 27 6 2.1027 -2.7763 2.4804 28 8 1.7583 -2.0337 3.6531 29 6 2.2281 -0.6829 3.6379 30 6 1.6484 0.0397 2.4190 31 1 -0.3634 0.5137 -0.8899 32 1 -0.3633 -1.0278 0.0005 33 1 -0.3634 0.5137 0.8900 34 1 3.9337 -1.2343 -0.3596 35 1 3.9333 -1.2341 -2.1398 36 1 3.9330 0.3071 -1.2498 37 1 1.3209 0.9105 -2.4019 38 1 0.6820 0.8557 -4.6487 39 1 1.4537 1.0050 -7.0713 40 1 1.3685 -0.1553 -9.2203 41 1 3.0364 -1.1102 -11.2270 42 1 0.3022 -3.8023 -7.1836 43 1 0.3947 -2.6208 -5.0464 44 1 0.4338 -2.0677 1.3147 45 1 1.8299 -2.6058 0.3490 46 1 3.1876 -2.8310 2.3900 47 1 1.6924 -3.7834 2.5538 48 1 3.3166 -0.6769 3.5810 49 1 1.9083 -0.1754 4.5479 50 1 2.0489 1.0523 2.3717 51 1 0.5624 0.0813 2.5021 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104985765.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:50:24 Heat of formation + Delta-G solvation = -61.477728 kcal Electronic energy + Delta-G solvation = -30564.690781 eV Core-core repulsion = 26463.178127 eV Total energy + Delta-G solvation = -4101.512654 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.60375 -40.79814 -39.34102 -38.16739 -36.21726 -35.58813 -34.72262 -32.30846 -31.97702 -31.42128 -30.85027 -30.25781 -27.51970 -26.74671 -25.16267 -24.67723 -23.48936 -22.76365 -22.02465 -21.61646 -20.54638 -19.49637 -19.12541 -18.20883 -17.60185 -17.13308 -17.00785 -16.61254 -16.25502 -16.07328 -15.95288 -15.77344 -15.66725 -15.31588 -15.07919 -14.71191 -14.58874 -14.45355 -14.32583 -13.96021 -13.67954 -13.31010 -13.19667 -13.16151 -13.12343 -12.84266 -12.75337 -12.72900 -12.50125 -12.46714 -12.30648 -12.12296 -11.81455 -11.54359 -11.43845 -11.37431 -11.17095 -10.97045 -10.66795 -10.62815 -10.08450 -9.44218 -9.34447 -8.80851 -8.57824 -6.25384 0.88316 1.16838 1.39665 1.49432 1.53062 1.72763 2.22142 2.25499 2.73866 2.80026 2.98720 3.46086 3.52724 3.75107 3.87077 3.97274 4.07640 4.12769 4.18501 4.30460 4.35778 4.40615 4.42785 4.52470 4.55927 4.63179 4.72488 4.76051 4.80872 4.87030 4.91467 4.93185 4.94582 5.02810 5.05348 5.14142 5.18969 5.22251 5.32916 5.35430 5.47421 5.58349 5.67968 5.83306 5.91768 5.97188 6.05917 6.13762 6.20429 6.27313 6.41108 6.67767 6.95108 7.02555 7.20954 7.71713 8.35356 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.031436 B = 0.001812 C = 0.001781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.483568 B =15447.852601 C =15720.038131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.087 3.913 3 H 0.111 0.889 4 C 0.171 3.829 5 H 0.062 0.938 6 C -0.145 4.145 7 N -0.722 5.722 8 C 0.695 3.305 9 O -0.624 6.624 10 N -0.658 5.658 11 C 0.029 3.971 12 C -0.112 4.112 13 C -0.170 4.170 14 C 0.073 3.927 15 C -0.498 4.498 16 H 0.073 0.927 17 C 0.034 3.966 18 N -0.826 5.826 19 Si 0.984 3.016 20 H -0.259 1.259 21 H -0.266 1.266 22 H -0.263 1.263 23 C -0.235 4.235 24 C -0.088 4.088 25 N -0.525 5.525 26 C 0.010 3.990 27 C 0.065 3.935 28 O -0.406 6.406 29 C 0.060 3.940 30 C 0.018 3.982 31 H 0.068 0.932 32 H 0.044 0.956 33 H 0.071 0.929 34 H 0.080 0.920 35 H 0.023 0.977 36 H 0.067 0.933 37 H 0.410 0.590 38 H 0.413 0.587 39 H 0.124 0.876 40 H 0.110 0.890 41 H 0.289 0.711 42 H 0.091 0.909 43 H 0.104 0.896 44 H 0.042 0.958 45 H 0.080 0.920 46 H 0.062 0.938 47 H 0.105 0.895 48 H 0.061 0.939 49 H 0.114 0.886 50 H 0.105 0.895 51 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.862 9.209 24.175 25.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.022 4.022 3 H 0.128 0.872 4 C 0.065 3.935 5 H 0.080 0.920 6 C -0.204 4.204 7 N -0.379 5.379 8 C 0.396 3.604 9 O -0.504 6.504 10 N -0.306 5.306 11 C -0.065 4.065 12 C -0.133 4.133 13 C -0.190 4.190 14 C 0.070 3.930 15 C -0.527 4.527 16 H 0.091 0.909 17 C -0.180 4.180 18 N -0.452 5.452 19 Si 0.804 3.196 20 H -0.183 1.183 21 H -0.190 1.190 22 H -0.187 1.187 23 C -0.255 4.255 24 C -0.108 4.108 25 N -0.250 5.250 26 C -0.118 4.118 27 C -0.012 4.012 28 O -0.325 6.325 29 C -0.017 4.017 30 C -0.110 4.110 31 H 0.087 0.913 32 H 0.063 0.937 33 H 0.089 0.911 34 H 0.099 0.901 35 H 0.042 0.958 36 H 0.086 0.914 37 H 0.247 0.753 38 H 0.250 0.750 39 H 0.142 0.858 40 H 0.128 0.872 41 H 0.099 0.901 42 H 0.109 0.891 43 H 0.122 0.878 44 H 0.060 0.940 45 H 0.099 0.901 46 H 0.080 0.920 47 H 0.123 0.877 48 H 0.080 0.920 49 H 0.132 0.868 50 H 0.124 0.876 51 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 0.031 8.202 24.208 25.560 hybrid contribution -0.973 0.295 -1.193 1.567 sum -0.942 8.497 23.015 24.551 Atomic orbital electron populations 1.22413 0.96597 1.01969 1.03139 1.21832 0.93208 0.98887 0.88286 0.87157 1.20712 0.94337 0.95998 0.82429 0.92023 1.21986 0.94745 1.02425 1.01211 1.44868 1.71419 1.13975 1.07658 1.16147 0.78196 0.84927 0.81158 1.90885 1.58371 1.16424 1.84708 1.41842 1.67002 1.16189 1.05596 1.16977 1.12734 0.92656 0.84181 1.20468 1.01882 0.99442 0.91470 1.20882 1.07000 0.94380 0.96786 1.17982 0.89761 0.92438 0.92790 1.19736 1.25130 1.12145 0.95731 0.90867 1.26752 0.92415 0.93674 1.05175 1.69883 1.13689 1.26440 1.35153 0.85231 0.79431 0.79345 0.75544 1.18299 1.19017 1.18747 1.20784 1.13582 0.98444 0.92668 1.20476 0.99413 0.94273 0.96637 1.62368 1.58786 1.01843 1.01968 1.22864 0.98404 0.90607 0.99949 1.22702 1.00001 0.95258 0.83211 1.87964 1.78969 1.24902 1.40678 1.22830 0.98990 0.81615 0.98243 1.22873 0.99464 0.99171 0.89491 0.91287 0.93739 0.91051 0.90094 0.95761 0.91407 0.75298 0.74998 0.85820 0.87207 0.90057 0.89058 0.87806 0.93967 0.90127 0.92019 0.87724 0.92028 0.86790 0.87646 0.93733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.58 8.33 71.98 0.60 -1.98 16 2 C 0.09 1.22 1.98 44.92 0.09 1.31 16 3 H 0.11 1.14 8.12 -2.39 -0.02 1.13 16 4 C 0.17 3.59 1.83 44.99 0.08 3.68 16 5 H 0.06 1.68 5.82 -2.38 -0.01 1.66 16 6 C -0.15 -3.18 9.33 71.98 0.67 -2.51 16 7 N -0.72 -16.13 4.39 -457.82 -2.01 -18.14 16 8 C 0.70 23.70 8.36 179.05 1.50 25.19 16 9 O -0.62 -27.78 13.45 -3.97 -0.05 -27.84 16 10 N -0.66 -22.06 5.31 -316.78 -1.68 -23.74 16 11 C 0.03 1.27 6.30 38.56 0.24 1.52 16 12 C -0.11 -5.08 9.90 22.14 0.22 -4.86 16 13 C -0.17 -8.99 8.63 22.48 0.19 -8.79 16 14 C 0.07 4.10 5.57 -21.28 -0.12 3.98 16 15 C -0.50 -27.72 9.04 23.39 0.21 -27.50 16 16 H 0.07 3.95 7.90 -2.91 -0.02 3.93 16 17 C 0.03 1.77 5.14 85.24 0.44 2.21 16 18 N -0.83 -43.66 10.97 21.82 0.24 -43.42 16 19 Si 0.98 38.75 29.59 68.60 2.03 40.78 16 20 H -0.26 -9.89 7.11 99.48 0.71 -9.18 16 21 H -0.27 -9.81 7.11 99.48 0.71 -9.10 16 22 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 23 C -0.23 -12.64 9.74 22.48 0.22 -12.42 16 24 C -0.09 -4.38 8.61 22.13 0.19 -4.19 16 25 N -0.52 -7.44 3.95 -869.99 -3.44 -10.88 16 26 C 0.01 0.17 4.86 86.32 0.42 0.58 16 27 C 0.07 1.01 7.01 72.01 0.50 1.51 16 28 O -0.41 -7.01 10.83 -148.98 -1.61 -8.62 16 29 C 0.06 0.69 7.01 72.01 0.50 1.20 16 30 C 0.02 0.19 5.31 86.31 0.46 0.65 16 31 H 0.07 0.95 7.44 -2.39 -0.02 0.93 16 32 H 0.04 0.80 6.43 -2.38 -0.02 0.78 16 33 H 0.07 0.84 6.58 -2.39 -0.02 0.82 16 34 H 0.08 1.62 7.60 -2.39 -0.02 1.60 16 35 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 37 H 0.41 6.03 8.41 -92.70 -0.78 5.25 16 38 H 0.41 10.02 8.83 -92.71 -0.82 9.20 16 39 H 0.12 4.66 8.06 -2.91 -0.02 4.63 16 40 H 0.11 5.94 6.20 -2.91 -0.02 5.92 16 41 H 0.29 13.76 8.30 -92.71 -0.77 12.99 16 42 H 0.09 4.77 8.06 -2.91 -0.02 4.75 16 43 H 0.10 5.21 6.25 -2.91 -0.02 5.19 16 44 H 0.04 0.76 6.42 -2.39 -0.02 0.74 16 45 H 0.08 1.54 6.22 -2.39 -0.01 1.53 16 46 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 47 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 48 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 49 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 50 H 0.11 0.75 8.13 -2.39 -0.02 0.73 16 51 H 0.04 0.52 6.56 -2.39 -0.02 0.51 16 Total: -1.00 -71.25 396.92 -0.74 -71.99 By element: Atomic # 1 Polarization: 40.94 SS G_CDS: -0.64 Total: 40.30 kcal Atomic # 6 Polarization: -26.86 SS G_CDS: 6.42 Total: -20.44 kcal Atomic # 7 Polarization: -89.28 SS G_CDS: -6.89 Total: -96.17 kcal Atomic # 8 Polarization: -34.79 SS G_CDS: -1.67 Total: -36.46 kcal Atomic # 14 Polarization: 38.75 SS G_CDS: 2.03 Total: 40.78 kcal Total: -71.25 -0.74 -71.99 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104985765.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.509 kcal (2) G-P(sol) polarization free energy of solvation -71.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds