Wall clock time and date at job start Wed Apr 1 2020 04:50:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.47358 * 2 1 4 4 N 1.46494 * 109.47422 * 120.00329 * 2 1 3 5 5 C 1.34781 * 120.00164 * 274.99829 * 4 2 1 6 6 O 1.21585 * 119.99494 * 0.02562 * 5 4 2 7 7 N 1.34772 * 120.00164 * 179.72166 * 5 4 2 8 8 C 1.39239 * 119.99853 * 175.35727 * 7 5 4 9 9 C 1.39481 * 119.83766 * 324.49717 * 8 7 5 10 10 C 1.36372 * 120.17082 * 179.75562 * 9 8 7 11 11 C 1.40868 * 119.82602 * 0.51798 * 10 9 8 12 12 C 1.41161 * 120.16152 * 179.71958 * 11 10 9 13 13 H 1.07998 * 119.99513 * 207.84474 * 12 11 10 14 14 C 1.39895 * 120.00359 * 27.83776 * 12 11 10 15 15 N 1.30884 * 119.99622 * 17.56231 * 14 12 11 16 16 Si 1.86789 * 120.00009 * 197.55818 * 14 12 11 17 17 H 1.48500 * 109.47341 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.47219 * 120.00206 * 16 14 12 19 19 H 1.48503 * 109.47255 * 239.99997 * 16 14 12 20 20 C 1.40862 * 119.67447 * 359.73364 * 11 10 9 21 21 C 1.36375 * 119.83054 * 0.02562 * 20 11 10 22 22 C 1.53002 * 109.47230 * 240.00412 * 2 1 3 23 23 H 1.09002 * 109.47030 * 306.58940 * 22 2 1 24 24 C 1.52999 * 109.47234 * 66.58925 * 22 2 1 25 25 N 1.46896 * 109.47314 * 186.59037 * 22 2 1 26 26 C 1.47013 * 111.00262 * 292.36786 * 25 22 2 27 27 C 1.53088 * 109.26206 * 177.60895 * 26 25 22 28 28 O 1.43015 * 109.26210 * 56.84734 * 27 26 25 29 29 C 1.43016 * 113.73841 * 301.33474 * 28 27 26 30 30 C 1.47017 * 111.00063 * 168.73465 * 25 22 2 31 31 H 1.08995 * 109.47063 * 300.40065 * 1 2 3 32 32 H 1.08994 * 109.47303 * 60.40336 * 1 2 3 33 33 H 1.08998 * 109.46844 * 180.40377 * 1 2 3 34 34 H 0.97003 * 120.00322 * 94.99859 * 4 2 1 35 35 H 0.96997 * 119.99846 * 355.36104 * 7 5 4 36 36 H 1.08004 * 119.91030 * 0.02562 * 9 8 7 37 37 H 1.07999 * 120.08920 * 180.25204 * 10 9 8 38 38 H 0.97000 * 119.99499 * 180.02562 * 15 14 12 39 39 H 1.08005 * 120.08834 * 179.97438 * 20 11 10 40 40 H 1.07997 * 119.91731 * 179.97438 * 21 20 11 41 41 H 1.09002 * 109.47100 * 60.00058 * 24 22 2 42 42 H 1.08997 * 109.47454 * 180.02562 * 24 22 2 43 43 H 1.09001 * 109.47641 * 300.00353 * 24 22 2 44 44 H 1.09009 * 109.50340 * 297.54591 * 26 25 22 45 45 H 1.09000 * 109.50570 * 57.67271 * 26 25 22 46 46 H 1.09001 * 109.50589 * 296.91471 * 27 26 25 47 47 H 1.09002 * 109.54846 * 176.80646 * 27 26 25 48 48 H 1.09006 * 109.50975 * 298.73402 * 29 28 27 49 49 H 1.08997 * 109.54525 * 178.62402 * 29 28 27 50 50 H 1.09003 * 109.50630 * 302.32574 * 30 25 22 51 51 H 1.09003 * 109.50942 * 62.41346 * 30 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1472 -0.0183 2.3571 6 8 1.8576 1.1612 2.4118 7 7 2.5912 -0.6551 3.4588 8 6 2.8163 0.0593 4.6326 9 6 3.3093 1.3625 4.5681 10 6 3.5276 2.0702 5.7132 11 6 3.2643 1.4778 6.9638 12 6 3.4934 2.2018 8.1538 13 1 3.7334 1.6776 9.0670 14 6 3.4096 3.5982 8.1502 15 7 2.7977 4.2145 7.1710 16 14 4.1709 4.5831 9.5428 17 1 4.7995 3.6566 10.5184 18 1 5.2034 5.4990 8.9947 19 1 3.1157 5.3769 10.2223 20 6 2.7716 0.1594 7.0211 21 6 2.5535 -0.5340 5.8673 22 6 2.0400 -0.7212 -1.2493 23 1 1.5836 -1.7091 -1.3103 24 6 1.6697 0.0894 -2.4930 25 7 3.5004 -0.8604 -1.1725 26 6 4.1604 0.4495 -1.2712 27 6 5.6733 0.2649 -1.1271 28 8 6.1341 -0.6501 -2.1250 29 6 5.5125 -1.9364 -2.0577 30 6 3.9979 -1.7739 -2.2113 31 1 -0.3633 0.5200 0.8863 32 1 -0.3633 0.5075 -0.8935 33 1 -0.3633 -1.0276 0.0072 34 1 2.2491 -1.6318 1.1525 35 1 2.7539 -1.6110 3.4341 36 1 3.5145 1.8138 3.6085 37 1 3.9055 3.0806 5.6615 38 1 2.7400 5.1828 7.1683 39 1 2.5678 -0.3014 7.9764 40 1 2.1762 -1.5450 5.9096 41 1 2.1261 1.0773 -2.4320 42 1 2.0326 -0.4246 -3.3830 43 1 0.5861 0.1927 -2.5501 44 1 3.9390 0.8965 -2.2405 45 1 3.7961 1.1015 -0.4773 46 1 5.8988 -0.1322 -0.1373 47 1 6.1719 1.2255 -1.2561 48 1 5.7332 -2.3975 -1.0950 49 1 5.8940 -2.5681 -2.8599 50 1 3.5149 -2.7452 -2.1036 51 1 3.7733 -1.3629 -3.1956 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104985768.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:50:28 Heat of formation + Delta-G solvation = -42.138646 kcal Electronic energy + Delta-G solvation = -31196.189507 eV Core-core repulsion = 27095.515458 eV Total energy + Delta-G solvation = -4100.674049 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.43843 -39.57238 -37.80149 -36.95664 -34.67765 -34.12112 -32.91537 -31.68487 -31.40542 -29.43560 -29.20279 -28.45547 -26.93943 -25.01863 -24.41354 -23.91535 -21.67668 -21.18530 -20.80098 -19.90645 -19.64499 -17.84079 -17.23469 -16.96068 -16.76838 -16.20092 -15.63721 -15.41902 -15.15809 -15.13349 -14.87892 -14.69446 -14.23112 -14.04355 -13.86445 -13.43450 -13.05823 -12.98317 -12.84487 -12.62555 -12.51090 -12.19132 -12.03242 -11.92356 -11.77074 -11.75577 -11.72148 -11.44275 -11.36672 -11.09872 -10.87238 -10.79667 -10.61932 -10.45226 -9.90164 -9.87540 -9.80665 -9.41890 -9.17460 -8.72984 -8.63166 -8.60858 -7.44913 -6.88751 -6.65091 -4.21086 2.74993 3.08744 3.12611 3.14930 3.18262 3.23719 3.44274 3.65010 3.86220 4.00399 4.36648 4.58050 4.65442 4.72574 4.74435 4.85482 4.87980 4.94530 4.95640 5.07081 5.20029 5.26123 5.30033 5.32349 5.41696 5.47849 5.57487 5.61904 5.67910 5.74895 5.76386 5.82398 5.99537 6.19402 6.22130 6.44614 6.62948 6.68719 6.83950 6.90383 6.90815 6.96143 7.12736 7.20388 7.37649 7.45270 7.69547 7.96231 8.08249 8.13525 8.34743 8.63657 8.70659 8.96709 9.01939 9.26974 10.28801 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015132 B = 0.002374 C = 0.002272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1849.900022 B =11793.042698 C =12318.943667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.174 3.826 3 H 0.085 0.915 4 N -0.734 5.734 5 C 0.696 3.304 6 O -0.580 6.580 7 N -0.669 5.669 8 C 0.021 3.979 9 C -0.085 4.085 10 C -0.151 4.151 11 C 0.106 3.894 12 C -0.465 4.465 13 H 0.077 0.923 14 C 0.075 3.925 15 N -0.792 5.792 16 Si 0.905 3.095 17 H -0.261 1.261 18 H -0.273 1.273 19 H -0.276 1.276 20 C -0.213 4.213 21 C -0.109 4.109 22 C 0.073 3.927 23 H 0.087 0.913 24 C -0.186 4.186 25 N -0.523 5.523 26 C 0.014 3.986 27 C 0.064 3.936 28 O -0.388 6.388 29 C 0.064 3.936 30 C 0.016 3.984 31 H 0.068 0.932 32 H 0.062 0.938 33 H 0.054 0.946 34 H 0.393 0.607 35 H 0.389 0.611 36 H 0.100 0.900 37 H 0.114 0.886 38 H 0.279 0.721 39 H 0.095 0.905 40 H 0.088 0.912 41 H 0.064 0.936 42 H 0.058 0.942 43 H 0.069 0.931 44 H 0.047 0.953 45 H 0.091 0.909 46 H 0.061 0.939 47 H 0.097 0.903 48 H 0.059 0.941 49 H 0.094 0.906 50 H 0.084 0.916 51 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.545 -11.270 -19.848 22.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.067 3.933 3 H 0.103 0.897 4 N -0.389 5.389 5 C 0.396 3.604 6 O -0.457 6.457 7 N -0.315 5.315 8 C -0.072 4.072 9 C -0.105 4.105 10 C -0.171 4.171 11 C 0.103 3.897 12 C -0.495 4.495 13 H 0.095 0.905 14 C -0.142 4.142 15 N -0.417 5.417 16 Si 0.730 3.270 17 H -0.185 1.185 18 H -0.198 1.198 19 H -0.201 1.201 20 C -0.233 4.233 21 C -0.130 4.130 22 C -0.036 4.036 23 H 0.105 0.895 24 C -0.245 4.245 25 N -0.247 5.247 26 C -0.114 4.114 27 C -0.013 4.013 28 O -0.306 6.306 29 C -0.013 4.013 30 C -0.112 4.112 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.073 0.927 34 H 0.226 0.774 35 H 0.222 0.778 36 H 0.118 0.882 37 H 0.132 0.868 38 H 0.090 0.910 39 H 0.113 0.887 40 H 0.107 0.893 41 H 0.083 0.917 42 H 0.077 0.923 43 H 0.088 0.912 44 H 0.065 0.935 45 H 0.110 0.890 46 H 0.080 0.920 47 H 0.116 0.884 48 H 0.078 0.922 49 H 0.113 0.887 50 H 0.102 0.898 51 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 0.480 -10.083 -19.569 22.019 hybrid contribution -0.157 -0.118 -0.061 0.206 sum 0.323 -10.200 -19.630 22.124 Atomic orbital electron populations 1.22253 0.95420 1.01963 1.02783 1.20652 0.93212 0.97023 0.82391 0.89656 1.44891 1.72353 1.13426 1.08274 1.16008 0.78551 0.85413 0.80382 1.90937 1.56199 1.14361 1.84188 1.42096 1.69087 1.10528 1.09811 1.16956 1.12662 0.94440 0.83114 1.20394 0.98946 0.93235 0.97943 1.20882 1.04803 1.00046 0.91373 1.17636 0.87967 0.90854 0.93238 1.19512 1.42616 0.91001 0.96333 0.90471 1.25895 0.92952 0.98529 0.96862 1.69882 1.30330 1.10639 1.30876 0.86320 0.79606 0.79716 0.81386 1.18473 1.19790 1.20109 1.20556 1.09734 0.97346 0.95643 1.20039 1.02739 0.98319 0.91866 1.22051 0.87633 0.99814 0.94115 0.89462 1.22459 1.02875 1.01210 0.97932 1.62375 1.04357 1.11161 1.46834 1.22858 0.95379 0.91433 1.01726 1.22676 0.92801 0.93751 0.92084 1.87976 1.64621 1.23164 1.54843 1.22632 0.90948 0.85491 1.02246 1.22804 0.96819 0.97735 0.93838 0.91336 0.91889 0.92674 0.77375 0.77829 0.88207 0.86810 0.90985 0.88715 0.89348 0.91715 0.92273 0.91200 0.93495 0.89048 0.92030 0.88449 0.92239 0.88742 0.89801 0.93846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.75 9.28 37.16 0.34 -1.41 16 2 C 0.17 1.94 1.82 -67.93 -0.12 1.82 16 3 H 0.09 1.18 6.30 -51.93 -0.33 0.85 16 4 N -0.73 -9.28 4.77 -58.68 -0.28 -9.56 16 5 C 0.70 12.51 8.24 -86.92 -0.72 11.79 16 6 O -0.58 -13.18 13.79 5.29 0.07 -13.11 16 7 N -0.67 -12.01 5.31 -14.10 -0.07 -12.09 16 8 C 0.02 0.48 6.25 -83.57 -0.52 -0.05 16 9 C -0.08 -2.15 8.57 -39.79 -0.34 -2.49 16 10 C -0.15 -4.11 8.62 -39.26 -0.34 -4.45 16 11 C 0.11 2.88 5.53 -106.80 -0.59 2.29 16 12 C -0.46 -12.56 9.02 -37.85 -0.34 -12.90 16 13 H 0.08 1.99 7.90 -52.49 -0.41 1.58 16 14 C 0.08 1.94 5.11 -17.34 -0.09 1.86 16 15 N -0.79 -21.39 11.16 55.55 0.62 -20.77 16 16 Si 0.91 19.11 29.59 -169.99 -5.03 14.08 16 17 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 18 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 19 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 20 C -0.21 -5.25 9.74 -39.26 -0.38 -5.63 16 21 C -0.11 -2.44 9.90 -39.79 -0.39 -2.83 16 22 C 0.07 0.60 1.94 -67.71 -0.13 0.47 16 23 H 0.09 0.63 8.01 -51.93 -0.42 0.21 16 24 C -0.19 -1.36 8.19 37.16 0.30 -1.05 16 25 N -0.52 -4.66 4.35 -226.33 -0.99 -5.65 16 26 C 0.01 0.14 4.77 -3.72 -0.02 0.12 16 27 C 0.06 0.66 7.01 37.20 0.26 0.92 16 28 O -0.39 -4.20 10.83 -35.23 -0.38 -4.58 16 29 C 0.06 0.52 7.01 37.21 0.26 0.78 16 30 C 0.02 0.12 5.40 -3.71 -0.02 0.10 16 31 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 32 H 0.06 0.55 6.60 -51.93 -0.34 0.21 16 33 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.39 4.03 8.62 -40.82 -0.35 3.68 16 35 H 0.39 5.49 8.83 -40.82 -0.36 5.13 16 36 H 0.10 2.54 6.54 -52.48 -0.34 2.20 16 37 H 0.11 3.21 6.40 -52.49 -0.34 2.88 16 38 H 0.28 6.87 8.30 -40.82 -0.34 6.53 16 39 H 0.09 2.18 8.06 -52.48 -0.42 1.76 16 40 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16 41 H 0.06 0.53 6.37 -51.93 -0.33 0.20 16 42 H 0.06 0.40 6.79 -51.93 -0.35 0.05 16 43 H 0.07 0.46 6.61 -51.93 -0.34 0.12 16 44 H 0.05 0.45 6.36 -51.92 -0.33 0.12 16 45 H 0.09 1.09 6.58 -51.93 -0.34 0.75 16 46 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 48 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 49 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 50 H 0.08 0.50 8.08 -51.93 -0.42 0.08 16 51 H 0.04 0.33 6.78 -51.93 -0.35 -0.02 16 LS Contribution 397.55 15.07 5.99 5.99 Total: -1.00 -31.98 397.55 -10.78 -42.77 By element: Atomic # 1 Polarization: 21.45 SS G_CDS: -7.88 Total: 13.57 kcal Atomic # 6 Polarization: -7.83 SS G_CDS: -2.84 Total: -10.66 kcal Atomic # 7 Polarization: -47.34 SS G_CDS: -0.72 Total: -48.06 kcal Atomic # 8 Polarization: -17.38 SS G_CDS: -0.31 Total: -17.69 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -5.03 Total: 14.08 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -31.98 -10.78 -42.77 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104985768.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.629 kcal (2) G-P(sol) polarization free energy of solvation -31.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds