Wall clock time and date at job start Wed Apr 1 2020 04:50:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.47358 * 2 1 4 4 N 1.46494 * 109.47422 * 120.00329 * 2 1 3 5 5 C 1.34781 * 120.00164 * 274.99829 * 4 2 1 6 6 O 1.21585 * 119.99494 * 0.02562 * 5 4 2 7 7 N 1.34772 * 120.00164 * 179.72166 * 5 4 2 8 8 C 1.39239 * 119.99853 * 175.35727 * 7 5 4 9 9 C 1.39481 * 119.83766 * 324.49717 * 8 7 5 10 10 C 1.36372 * 120.17082 * 179.75562 * 9 8 7 11 11 C 1.40868 * 119.82602 * 0.51798 * 10 9 8 12 12 C 1.41161 * 120.16152 * 179.71958 * 11 10 9 13 13 H 1.07998 * 119.99513 * 207.84474 * 12 11 10 14 14 C 1.39895 * 120.00359 * 27.83776 * 12 11 10 15 15 N 1.30884 * 119.99622 * 17.56231 * 14 12 11 16 16 Si 1.86789 * 120.00009 * 197.55818 * 14 12 11 17 17 H 1.48500 * 109.47341 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.47219 * 120.00206 * 16 14 12 19 19 H 1.48503 * 109.47255 * 239.99997 * 16 14 12 20 20 C 1.40862 * 119.67447 * 359.73364 * 11 10 9 21 21 C 1.36375 * 119.83054 * 0.02562 * 20 11 10 22 22 C 1.53002 * 109.47230 * 240.00412 * 2 1 3 23 23 H 1.09002 * 109.47030 * 306.58940 * 22 2 1 24 24 C 1.52999 * 109.47234 * 66.58925 * 22 2 1 25 25 N 1.46896 * 109.47314 * 186.59037 * 22 2 1 26 26 C 1.47013 * 111.00262 * 292.36786 * 25 22 2 27 27 C 1.53088 * 109.26206 * 177.60895 * 26 25 22 28 28 O 1.43015 * 109.26210 * 56.84734 * 27 26 25 29 29 C 1.43016 * 113.73841 * 301.33474 * 28 27 26 30 30 C 1.47017 * 111.00063 * 168.73465 * 25 22 2 31 31 H 1.08995 * 109.47063 * 300.40065 * 1 2 3 32 32 H 1.08994 * 109.47303 * 60.40336 * 1 2 3 33 33 H 1.08998 * 109.46844 * 180.40377 * 1 2 3 34 34 H 0.97003 * 120.00322 * 94.99859 * 4 2 1 35 35 H 0.96997 * 119.99846 * 355.36104 * 7 5 4 36 36 H 1.08004 * 119.91030 * 0.02562 * 9 8 7 37 37 H 1.07999 * 120.08920 * 180.25204 * 10 9 8 38 38 H 0.97000 * 119.99499 * 180.02562 * 15 14 12 39 39 H 1.08005 * 120.08834 * 179.97438 * 20 11 10 40 40 H 1.07997 * 119.91731 * 179.97438 * 21 20 11 41 41 H 1.09002 * 109.47100 * 60.00058 * 24 22 2 42 42 H 1.08997 * 109.47454 * 180.02562 * 24 22 2 43 43 H 1.09001 * 109.47641 * 300.00353 * 24 22 2 44 44 H 1.09009 * 109.50340 * 297.54591 * 26 25 22 45 45 H 1.09000 * 109.50570 * 57.67271 * 26 25 22 46 46 H 1.09001 * 109.50589 * 296.91471 * 27 26 25 47 47 H 1.09002 * 109.54846 * 176.80646 * 27 26 25 48 48 H 1.09006 * 109.50975 * 298.73402 * 29 28 27 49 49 H 1.08997 * 109.54525 * 178.62402 * 29 28 27 50 50 H 1.09003 * 109.50630 * 302.32574 * 30 25 22 51 51 H 1.09003 * 109.50942 * 62.41346 * 30 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1472 -0.0183 2.3571 6 8 1.8576 1.1612 2.4118 7 7 2.5912 -0.6551 3.4588 8 6 2.8163 0.0593 4.6326 9 6 3.3093 1.3625 4.5681 10 6 3.5276 2.0702 5.7132 11 6 3.2643 1.4778 6.9638 12 6 3.4934 2.2018 8.1538 13 1 3.7334 1.6776 9.0670 14 6 3.4096 3.5982 8.1502 15 7 2.7977 4.2145 7.1710 16 14 4.1709 4.5831 9.5428 17 1 4.7995 3.6566 10.5184 18 1 5.2034 5.4990 8.9947 19 1 3.1157 5.3769 10.2223 20 6 2.7716 0.1594 7.0211 21 6 2.5535 -0.5340 5.8673 22 6 2.0400 -0.7212 -1.2493 23 1 1.5836 -1.7091 -1.3103 24 6 1.6697 0.0894 -2.4930 25 7 3.5004 -0.8604 -1.1725 26 6 4.1604 0.4495 -1.2712 27 6 5.6733 0.2649 -1.1271 28 8 6.1341 -0.6501 -2.1250 29 6 5.5125 -1.9364 -2.0577 30 6 3.9979 -1.7739 -2.2113 31 1 -0.3633 0.5200 0.8863 32 1 -0.3633 0.5075 -0.8935 33 1 -0.3633 -1.0276 0.0072 34 1 2.2491 -1.6318 1.1525 35 1 2.7539 -1.6110 3.4341 36 1 3.5145 1.8138 3.6085 37 1 3.9055 3.0806 5.6615 38 1 2.7400 5.1828 7.1683 39 1 2.5678 -0.3014 7.9764 40 1 2.1762 -1.5450 5.9096 41 1 2.1261 1.0773 -2.4320 42 1 2.0326 -0.4246 -3.3830 43 1 0.5861 0.1927 -2.5501 44 1 3.9390 0.8965 -2.2405 45 1 3.7961 1.1015 -0.4773 46 1 5.8988 -0.1322 -0.1373 47 1 6.1719 1.2255 -1.2561 48 1 5.7332 -2.3975 -1.0950 49 1 5.8940 -2.5681 -2.8599 50 1 3.5149 -2.7452 -2.1036 51 1 3.7733 -1.3629 -3.1956 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104985768.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:50:27 Heat of formation + Delta-G solvation = -64.754448 kcal Electronic energy + Delta-G solvation = -31197.170201 eV Core-core repulsion = 27095.515458 eV Total energy + Delta-G solvation = -4101.654744 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.53116 -40.74519 -39.30221 -38.16133 -36.17283 -35.47295 -34.68899 -32.72290 -32.14359 -31.38040 -30.71841 -29.63495 -27.68034 -26.72271 -25.25038 -24.86417 -23.27653 -22.90320 -21.89304 -21.41082 -20.54403 -19.31283 -19.12309 -18.23310 -17.63789 -17.21093 -17.04745 -16.65698 -16.12398 -16.05393 -15.91236 -15.86818 -15.71390 -15.32322 -15.09014 -14.76451 -14.49765 -14.33264 -13.93733 -13.86241 -13.71756 -13.56281 -13.35025 -13.20686 -12.94357 -12.81119 -12.70588 -12.63728 -12.54432 -12.47858 -12.29244 -12.11991 -11.71532 -11.67415 -11.56088 -11.38494 -11.19406 -11.00093 -10.67397 -10.47549 -9.94384 -9.42045 -9.32319 -8.77847 -8.56390 -6.23091 0.90274 1.16631 1.38784 1.47627 1.55025 1.87805 2.22764 2.32545 2.69680 2.82129 2.94160 3.48246 3.61369 3.76742 3.89459 3.96480 4.09264 4.16937 4.23954 4.27416 4.37052 4.38822 4.44962 4.46383 4.49093 4.61289 4.63030 4.72335 4.80430 4.83548 4.87866 4.94980 4.98847 5.00872 5.04342 5.13404 5.20719 5.24981 5.32058 5.33955 5.48774 5.66323 5.70063 5.84017 5.94387 6.03432 6.12529 6.16437 6.16835 6.30361 6.41366 6.71825 6.96736 7.05508 7.30096 7.81058 8.38663 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015132 B = 0.002374 C = 0.002272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1849.900022 B =11793.042698 C =12318.943667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.171 3.829 3 H 0.053 0.947 4 N -0.708 5.708 5 C 0.694 3.306 6 O -0.631 6.631 7 N -0.660 5.660 8 C 0.037 3.963 9 C -0.098 4.098 10 C -0.174 4.174 11 C 0.073 3.927 12 C -0.499 4.499 13 H 0.081 0.919 14 C 0.030 3.970 15 N -0.834 5.834 16 Si 0.983 3.017 17 H -0.253 1.253 18 H -0.268 1.268 19 H -0.267 1.267 20 C -0.219 4.219 21 C -0.103 4.103 22 C 0.083 3.917 23 H 0.113 0.887 24 C -0.182 4.182 25 N -0.531 5.531 26 C 0.021 3.979 27 C 0.065 3.935 28 O -0.404 6.404 29 C 0.057 3.943 30 C 0.020 3.980 31 H 0.030 0.970 32 H 0.083 0.917 33 H 0.077 0.923 34 H 0.410 0.590 35 H 0.413 0.587 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.285 0.715 39 H 0.110 0.890 40 H 0.133 0.867 41 H 0.050 0.950 42 H 0.071 0.929 43 H 0.080 0.920 44 H 0.051 0.949 45 H 0.065 0.935 46 H 0.047 0.953 47 H 0.100 0.900 48 H 0.055 0.945 49 H 0.116 0.884 50 H 0.108 0.892 51 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.014 -14.173 -21.106 25.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.065 3.935 3 H 0.071 0.929 4 N -0.364 5.364 5 C 0.394 3.606 6 O -0.511 6.511 7 N -0.309 5.309 8 C -0.057 4.057 9 C -0.119 4.119 10 C -0.194 4.194 11 C 0.070 3.930 12 C -0.528 4.528 13 H 0.099 0.901 14 C -0.184 4.184 15 N -0.460 5.460 16 Si 0.804 3.196 17 H -0.176 1.176 18 H -0.193 1.193 19 H -0.192 1.192 20 C -0.239 4.239 21 C -0.124 4.124 22 C -0.026 4.026 23 H 0.131 0.869 24 C -0.241 4.241 25 N -0.256 5.256 26 C -0.107 4.107 27 C -0.012 4.012 28 O -0.323 6.323 29 C -0.019 4.019 30 C -0.107 4.107 31 H 0.049 0.951 32 H 0.101 0.899 33 H 0.096 0.904 34 H 0.247 0.753 35 H 0.249 0.751 36 H 0.106 0.894 37 H 0.107 0.893 38 H 0.095 0.905 39 H 0.128 0.872 40 H 0.151 0.849 41 H 0.069 0.931 42 H 0.090 0.910 43 H 0.099 0.901 44 H 0.069 0.931 45 H 0.084 0.916 46 H 0.065 0.935 47 H 0.118 0.882 48 H 0.074 0.926 49 H 0.134 0.866 50 H 0.126 0.874 51 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -0.053 -13.077 -20.882 24.639 hybrid contribution -0.030 0.650 0.145 0.667 sum -0.083 -12.428 -20.737 24.176 Atomic orbital electron populations 1.22186 0.94536 1.03076 1.01963 1.20796 0.93852 0.95868 0.82942 0.92857 1.44690 1.70753 1.13989 1.06928 1.16202 0.78135 0.84847 0.81381 1.90920 1.58259 1.16905 1.85062 1.41863 1.69017 1.11432 1.08542 1.17001 1.10109 0.93523 0.85116 1.20402 0.99898 0.94793 0.96758 1.20760 1.06634 0.99513 0.92512 1.17969 0.89262 0.92437 0.93303 1.19785 1.44378 0.92164 0.96521 0.90115 1.26823 0.92684 0.99267 0.99596 1.69965 1.31693 1.11211 1.33156 0.85152 0.78670 0.77950 0.77853 1.17634 1.19267 1.19210 1.20841 1.09133 0.96606 0.97370 1.20389 1.01355 1.00003 0.90618 1.21994 0.87277 1.00725 0.92565 0.86869 1.22425 1.03542 1.00403 0.97708 1.62355 1.04697 1.10591 1.47955 1.22681 0.95162 0.91944 1.00910 1.22618 0.93127 0.93995 0.91417 1.87956 1.65312 1.24264 1.54729 1.22862 0.91611 0.84520 1.02956 1.22851 0.96280 0.98294 0.93313 0.95118 0.89850 0.90430 0.75329 0.75067 0.89413 0.89281 0.90475 0.87175 0.84894 0.93140 0.90988 0.90109 0.93057 0.91632 0.93462 0.88163 0.92625 0.86606 0.87370 0.93508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.12 9.28 71.98 0.67 -2.45 16 2 C 0.17 3.65 1.82 44.99 0.08 3.73 16 3 H 0.05 1.53 6.30 -2.39 -0.02 1.51 16 4 N -0.71 -16.87 4.77 -457.82 -2.18 -19.06 16 5 C 0.69 24.78 8.24 179.05 1.48 26.25 16 6 O -0.63 -29.74 13.79 -3.98 -0.05 -29.79 16 7 N -0.66 -22.79 5.31 -316.78 -1.68 -24.47 16 8 C 0.04 1.65 6.25 38.57 0.24 1.89 16 9 C -0.10 -5.17 8.57 22.13 0.19 -4.98 16 10 C -0.17 -10.00 8.62 22.48 0.19 -9.81 16 11 C 0.07 4.10 5.53 -21.28 -0.12 3.98 16 12 C -0.50 -27.83 9.02 23.39 0.21 -27.62 16 13 H 0.08 4.27 7.90 -2.91 -0.02 4.24 16 14 C 0.03 1.60 5.11 85.24 0.44 2.03 16 15 N -0.83 -47.16 11.16 21.82 0.24 -46.92 16 16 Si 0.98 40.07 29.59 68.60 2.03 42.10 16 17 H -0.25 -9.87 7.11 99.48 0.71 -9.16 16 18 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 19 H -0.27 -10.44 7.11 99.48 0.71 -9.73 16 20 C -0.22 -10.80 9.74 22.48 0.22 -10.58 16 21 C -0.10 -4.45 9.90 22.14 0.22 -4.23 16 22 C 0.08 1.14 1.94 44.92 0.09 1.23 16 23 H 0.11 1.07 8.01 -2.39 -0.02 1.05 16 24 C -0.18 -2.19 8.19 71.98 0.59 -1.60 16 25 N -0.53 -8.41 4.35 -869.97 -3.79 -12.19 16 26 C 0.02 0.43 4.77 86.31 0.41 0.84 16 27 C 0.07 1.37 7.01 72.01 0.50 1.87 16 28 O -0.40 -8.35 10.83 -148.98 -1.61 -9.96 16 29 C 0.06 0.80 7.01 72.02 0.50 1.31 16 30 C 0.02 0.24 5.40 86.31 0.47 0.70 16 31 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.08 1.29 6.60 -2.39 -0.02 1.27 16 33 H 0.08 1.17 8.14 -2.39 -0.02 1.16 16 34 H 0.41 7.15 8.62 -92.71 -0.80 6.35 16 35 H 0.41 10.39 8.83 -92.71 -0.82 9.57 16 36 H 0.09 4.76 6.54 -2.91 -0.02 4.74 16 37 H 0.09 5.43 6.40 -2.91 -0.02 5.41 16 38 H 0.28 14.66 8.30 -92.71 -0.77 13.89 16 39 H 0.11 4.97 8.06 -2.91 -0.02 4.95 16 40 H 0.13 4.52 8.06 -2.91 -0.02 4.50 16 41 H 0.05 0.77 6.37 -2.39 -0.02 0.75 16 42 H 0.07 0.73 6.79 -2.39 -0.02 0.71 16 43 H 0.08 0.81 6.61 -2.39 -0.02 0.80 16 44 H 0.05 0.97 6.36 -2.38 -0.02 0.95 16 45 H 0.07 1.66 6.58 -2.39 -0.02 1.64 16 46 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 47 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 48 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 49 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 50 H 0.11 0.79 8.08 -2.39 -0.02 0.77 16 51 H 0.05 0.55 6.78 -2.39 -0.02 0.53 16 Total: -1.00 -74.65 397.55 -1.32 -75.97 By element: Atomic # 1 Polarization: 42.41 SS G_CDS: -0.65 Total: 41.75 kcal Atomic # 6 Polarization: -23.80 SS G_CDS: 6.38 Total: -17.42 kcal Atomic # 7 Polarization: -95.24 SS G_CDS: -7.41 Total: -102.65 kcal Atomic # 8 Polarization: -38.09 SS G_CDS: -1.67 Total: -39.75 kcal Atomic # 14 Polarization: 40.07 SS G_CDS: 2.03 Total: 42.10 kcal Total: -74.65 -1.32 -75.97 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104985768.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.215 kcal (2) G-P(sol) polarization free energy of solvation -74.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds