Wall clock time and date at job start Wed Apr 1 2020 04:56:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.46910 * 2 1 4 4 C 1.52996 * 109.47541 * 120.00939 * 2 1 3 5 5 N 1.46892 * 109.47211 * 175.94215 * 4 2 1 6 6 C 1.46957 * 110.99933 * 199.34187 * 5 4 2 7 7 C 1.53058 * 109.36495 * 176.81429 * 6 5 4 8 8 N 1.46951 * 109.36459 * 58.40094 * 7 6 5 9 9 C 1.46900 * 111.00335 * 176.81426 * 8 7 6 10 10 C 1.46961 * 110.88352 * 300.68455 * 8 7 6 11 11 C 1.46966 * 110.99785 * 75.54742 * 5 4 2 12 12 N 1.46507 * 109.46795 * 240.00909 * 2 1 3 13 13 C 1.34774 * 120.00240 * 89.12802 * 12 2 1 14 14 O 1.21594 * 119.99977 * 0.02562 * 13 12 2 15 15 C 1.47528 * 120.00284 * 179.97438 * 13 12 2 16 16 C 1.39664 * 120.19426 * 359.97438 * 15 13 12 17 17 C 1.37833 * 119.91826 * 179.72585 * 16 15 13 18 18 C 1.38575 * 120.32343 * 0.02562 * 17 16 15 19 19 C 1.38024 * 120.40079 * 0.02562 * 18 17 16 20 20 C 1.38832 * 120.07224 * 359.95246 * 19 18 17 21 21 O 1.35524 * 120.15983 * 180.02562 * 20 19 18 22 22 C 1.34815 * 116.99883 * 354.16490 * 21 20 19 23 23 H 1.07993 * 120.00125 * 5.07450 * 22 21 20 24 24 C 1.38696 * 119.99499 * 185.07443 * 22 21 20 25 25 N 1.31515 * 120.00342 * 359.97438 * 24 22 21 26 26 Si 1.86802 * 119.99581 * 180.02562 * 24 22 21 27 27 H 1.48493 * 109.47613 * 59.99957 * 26 24 22 28 28 H 1.48502 * 109.47013 * 180.02562 * 26 24 22 29 29 H 1.48503 * 109.47249 * 299.99618 * 26 24 22 30 30 H 1.08998 * 109.47004 * 299.99167 * 1 2 3 31 31 H 1.08994 * 109.47363 * 59.99374 * 1 2 3 32 32 H 1.09009 * 109.46926 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.46676 * 295.94135 * 4 2 1 34 34 H 1.08997 * 109.47241 * 55.93635 * 4 2 1 35 35 H 1.09002 * 109.49253 * 296.77996 * 6 5 4 36 36 H 1.08995 * 109.48589 * 56.84899 * 6 5 4 37 37 H 1.09008 * 109.48452 * 298.43736 * 7 6 5 38 38 H 1.08997 * 109.50902 * 178.38265 * 7 6 5 39 39 H 1.08995 * 109.47312 * 183.80269 * 9 8 7 40 40 H 1.09004 * 109.46503 * 303.80319 * 9 8 7 41 41 H 1.08999 * 109.47014 * 63.79456 * 9 8 7 42 42 H 1.09000 * 109.48520 * 299.34810 * 10 8 7 43 43 H 1.09000 * 109.50867 * 179.30004 * 10 8 7 44 44 H 1.08997 * 109.48810 * 303.15113 * 11 5 4 45 45 H 1.08996 * 109.48887 * 63.19848 * 11 5 4 46 46 H 0.96996 * 119.99646 * 269.12652 * 12 2 1 47 47 H 1.07998 * 120.04286 * 359.74796 * 16 15 13 48 48 H 1.08001 * 119.83961 * 179.97438 * 17 16 15 49 49 H 1.08001 * 119.79924 * 179.97438 * 18 17 16 50 50 H 1.08004 * 119.95946 * 179.97438 * 19 18 17 51 51 H 0.96999 * 119.99973 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7214 1.2491 5 7 3.5058 -0.8068 1.2010 6 6 4.0020 -1.8561 2.1023 7 6 5.5223 -1.9667 1.9640 8 7 6.1361 -0.6699 2.2819 9 6 7.6018 -0.7552 2.2338 10 6 5.6398 0.3795 1.3807 11 6 4.1196 0.4901 1.5189 12 7 2.0183 -0.6905 -1.1964 13 6 2.2262 -0.0003 -2.3351 14 8 2.0089 1.1956 -2.3695 15 6 2.7184 -0.6954 -3.5397 16 6 2.9708 -2.0686 -3.5043 17 6 3.4252 -2.7134 -4.6346 18 6 3.6338 -2.0057 -5.8076 19 6 3.3896 -0.6481 -5.8572 20 6 2.9312 0.0179 -4.7286 21 8 2.6904 1.3507 -4.7753 22 6 3.0299 1.9946 -5.9101 23 1 3.3958 1.4362 -6.7590 24 6 2.9091 3.3741 -5.9873 25 7 2.4630 4.0541 -4.9538 26 14 3.3788 4.2661 -7.5599 27 1 2.5402 3.7694 -8.6803 28 1 3.1598 5.7246 -7.3860 29 1 4.8104 4.0139 -7.8635 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0278 -0.0005 33 1 1.7374 -0.1674 2.1376 34 1 1.6186 -1.7259 1.2861 35 1 3.7480 -1.6017 3.1313 36 1 3.5427 -2.8088 1.8388 37 1 5.7750 -2.2477 0.9415 38 1 5.8963 -2.7245 2.6524 39 1 8.0315 0.1991 2.5384 40 1 7.9424 -1.5394 2.9099 41 1 7.9190 -0.9887 1.2175 42 1 5.8939 0.1252 0.3516 43 1 6.0992 1.3324 1.6436 44 1 3.7460 1.2478 0.8302 45 1 3.8666 0.7713 2.5412 46 1 2.1920 -1.6443 -1.1688 47 1 2.8099 -2.6247 -2.5926 48 1 3.6204 -3.7752 -4.6058 49 1 3.9904 -2.5194 -6.6882 50 1 3.5551 -0.1035 -6.7750 51 1 2.3782 5.0188 -5.0079 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000106819758.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:56:42 Heat of formation + Delta-G solvation = -41.522539 kcal Electronic energy + Delta-G solvation = -31637.089280 eV Core-core repulsion = 27536.441948 eV Total energy + Delta-G solvation = -4100.647332 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.28836 -40.44090 -39.65850 -38.00985 -37.32684 -35.31926 -34.31083 -32.89682 -31.92721 -31.02753 -30.53080 -29.51249 -27.36130 -26.37090 -24.93794 -24.64382 -23.98887 -23.19442 -21.85737 -21.30134 -20.74010 -19.80939 -19.17674 -17.85884 -17.35730 -17.11162 -16.36895 -16.21385 -16.05909 -15.94948 -15.86484 -15.80883 -15.62663 -15.37910 -15.26034 -15.22220 -14.86431 -14.42562 -14.15547 -14.04771 -13.54148 -13.50795 -13.43154 -13.17595 -12.99570 -12.95815 -12.75952 -12.66651 -12.54125 -12.48614 -12.33987 -12.25882 -12.15353 -12.10607 -11.72323 -11.48986 -11.37971 -10.81431 -10.50627 -9.96442 -9.70440 -9.45209 -9.24085 -9.00466 -8.43049 -6.14065 0.17874 0.75321 1.31299 1.44458 1.49178 2.16269 2.20467 2.40590 2.85208 2.90508 2.95423 3.26458 3.50636 3.76764 3.86488 4.04036 4.06406 4.11244 4.17801 4.19222 4.30589 4.31348 4.36445 4.47100 4.50022 4.55240 4.58091 4.60725 4.65115 4.67045 4.74604 4.79815 4.82634 4.86666 4.96729 4.99596 5.00577 5.07401 5.07774 5.10844 5.19726 5.27631 5.51516 5.64078 5.71427 5.74095 5.91754 5.95370 5.97770 6.13507 6.18461 6.19717 6.87059 6.96112 7.65072 7.83313 8.77252 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010102 B = 0.003116 C = 0.003035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2771.053711 B = 8983.287129 C = 9223.563158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.147 3.853 3 H 0.044 0.956 4 C 0.060 3.940 5 N -0.547 5.547 6 C 0.061 3.939 7 C 0.054 3.946 8 N -0.549 5.549 9 C 0.025 3.975 10 C 0.061 3.939 11 C 0.064 3.936 12 N -0.694 5.694 13 C 0.550 3.450 14 O -0.575 6.575 15 C -0.242 4.242 16 C -0.028 4.028 17 C -0.202 4.202 18 C -0.043 4.043 19 C -0.260 4.260 20 C 0.148 3.852 21 O -0.188 6.188 22 C -0.429 4.429 23 H 0.105 0.895 24 C -0.021 4.021 25 N -0.905 5.905 26 Si 1.020 2.980 27 H -0.254 1.254 28 H -0.273 1.273 29 H -0.255 1.255 30 H 0.081 0.919 31 H 0.023 0.977 32 H 0.083 0.917 33 H 0.062 0.938 34 H 0.110 0.890 35 H 0.045 0.955 36 H 0.103 0.897 37 H 0.030 0.970 38 H 0.100 0.900 39 H 0.070 0.930 40 H 0.086 0.914 41 H 0.019 0.981 42 H 0.018 0.982 43 H 0.079 0.921 44 H 0.051 0.949 45 H 0.048 0.952 46 H 0.408 0.592 47 H 0.158 0.842 48 H 0.163 0.837 49 H 0.152 0.848 50 H 0.121 0.879 51 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.335 -18.023 14.291 23.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.042 3.958 3 H 0.062 0.938 4 C -0.068 4.068 5 N -0.272 5.272 6 C -0.066 4.066 7 C -0.074 4.074 8 N -0.274 5.274 9 C -0.123 4.123 10 C -0.068 4.068 11 C -0.065 4.065 12 N -0.347 5.347 13 C 0.339 3.661 14 O -0.455 6.455 15 C -0.246 4.246 16 C -0.046 4.046 17 C -0.220 4.220 18 C -0.061 4.061 19 C -0.279 4.279 20 C 0.093 3.907 21 O -0.091 6.091 22 C -0.505 4.505 23 H 0.122 0.878 24 C -0.220 4.220 25 N -0.540 5.540 26 Si 0.839 3.161 27 H -0.178 1.178 28 H -0.197 1.197 29 H -0.179 1.179 30 H 0.100 0.900 31 H 0.042 0.958 32 H 0.101 0.899 33 H 0.080 0.920 34 H 0.128 0.872 35 H 0.063 0.937 36 H 0.121 0.879 37 H 0.048 0.952 38 H 0.118 0.882 39 H 0.088 0.912 40 H 0.105 0.895 41 H 0.037 0.963 42 H 0.036 0.964 43 H 0.097 0.903 44 H 0.070 0.930 45 H 0.066 0.934 46 H 0.246 0.754 47 H 0.175 0.825 48 H 0.180 0.820 49 H 0.170 0.830 50 H 0.139 0.861 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.032 -16.782 14.540 22.568 hybrid contribution 0.230 1.013 -1.000 1.442 sum 4.262 -15.769 13.540 21.217 Atomic orbital electron populations 1.22086 0.94364 1.03229 1.01617 1.20895 0.93979 0.96218 0.84742 0.93767 1.22362 0.87034 1.02373 0.94998 1.62008 1.06214 1.05710 1.53294 1.22241 0.94370 0.95445 0.94569 1.22267 0.94485 0.90813 0.99799 1.62249 1.07367 1.06169 1.51640 1.22397 0.86479 1.03330 1.00135 1.22050 0.94905 0.95890 0.93920 1.22017 0.93848 0.91554 0.99051 1.45404 1.67998 1.12113 1.09196 1.18437 0.77213 0.86300 0.84104 1.90913 1.52854 1.16904 1.84800 1.19382 1.17159 0.95740 0.92335 1.21272 0.93503 0.90096 0.99744 1.21158 1.07003 1.01392 0.92446 1.21405 0.93604 0.91759 0.99312 1.21290 1.11304 0.97054 0.98287 1.20099 0.91467 0.84983 0.94167 1.84186 1.70394 1.16142 1.38393 1.21982 1.46116 0.91107 0.91314 0.87810 1.26728 0.96148 0.96169 1.02985 1.70322 1.43375 1.07973 1.32369 0.84653 0.79584 0.76772 0.75133 1.17776 1.19728 1.17922 0.89977 0.95755 0.89859 0.91985 0.87197 0.93713 0.87858 0.95161 0.88214 0.91156 0.89536 0.96252 0.96350 0.90309 0.93044 0.93364 0.75416 0.82496 0.81976 0.83007 0.86096 0.92120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.96 9.52 71.98 0.68 -3.27 16 2 C 0.15 4.22 2.65 44.99 0.12 4.34 16 3 H 0.04 1.68 6.32 -2.39 -0.02 1.66 16 4 C 0.06 1.15 4.57 86.30 0.39 1.55 16 5 N -0.55 -11.87 4.39 -895.72 -3.93 -15.80 16 6 C 0.06 0.97 5.57 86.31 0.48 1.45 16 7 C 0.05 0.93 5.62 86.31 0.49 1.42 16 8 N -0.55 -11.30 4.97 -921.93 -4.58 -15.88 16 9 C 0.02 0.42 9.60 127.69 1.23 1.65 16 10 C 0.06 1.55 5.62 86.31 0.49 2.03 16 11 C 0.06 1.64 5.43 86.31 0.47 2.11 16 12 N -0.69 -22.33 4.74 -445.70 -2.11 -24.44 16 13 C 0.55 25.58 7.76 86.69 0.67 26.25 16 14 O -0.57 -34.68 14.76 16.88 0.25 -34.43 16 15 C -0.24 -10.83 5.89 -19.99 -0.12 -10.95 16 16 C -0.03 -0.87 9.53 22.52 0.21 -0.66 16 17 C -0.20 -5.61 10.03 22.25 0.22 -5.39 16 18 C -0.04 -1.38 10.03 22.30 0.22 -1.16 16 19 C -0.26 -11.50 9.16 22.36 0.20 -11.29 16 20 C 0.15 7.85 6.66 22.91 0.15 8.00 16 21 O -0.19 -12.30 7.84 0.78 0.01 -12.29 16 22 C -0.43 -26.60 9.49 67.93 0.64 -25.96 16 23 H 0.10 5.78 5.21 -2.91 -0.02 5.77 16 24 C -0.02 -1.28 5.49 84.85 0.47 -0.81 16 25 N -0.90 -60.18 13.67 21.62 0.30 -59.89 16 26 Si 1.02 45.13 29.55 68.60 2.03 47.16 16 27 H -0.25 -10.40 7.11 99.48 0.71 -9.69 16 28 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 29 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 30 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.08 1.64 8.14 -2.38 -0.02 1.62 16 33 H 0.06 1.07 8.00 -2.38 -0.02 1.05 16 34 H 0.11 1.43 7.85 -2.39 -0.02 1.41 16 35 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.10 1.15 8.00 -2.39 -0.02 1.13 16 37 H 0.03 0.61 8.14 -2.38 -0.02 0.59 16 38 H 0.10 1.26 8.13 -2.39 -0.02 1.24 16 39 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.09 1.13 8.13 -2.39 -0.02 1.11 16 41 H 0.02 0.36 8.14 -2.39 -0.02 0.34 16 42 H 0.02 0.56 8.14 -2.39 -0.02 0.54 16 43 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 44 H 0.05 1.66 6.86 -2.39 -0.02 1.64 16 45 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 46 H 0.41 10.01 6.67 -92.71 -0.62 9.40 16 47 H 0.16 3.45 6.40 -2.91 -0.02 3.43 16 48 H 0.16 2.98 8.06 -2.91 -0.02 2.95 16 49 H 0.15 3.65 8.06 -2.91 -0.02 3.62 16 50 H 0.12 5.43 5.64 -2.91 -0.02 5.41 16 51 H 0.27 16.47 8.31 -92.71 -0.77 15.70 16 Total: -1.00 -90.05 406.90 -0.70 -90.75 By element: Atomic # 1 Polarization: 35.22 SS G_CDS: 0.31 Total: 35.53 kcal Atomic # 6 Polarization: -17.73 SS G_CDS: 7.03 Total: -10.70 kcal Atomic # 7 Polarization: -105.68 SS G_CDS: -10.32 Total: -116.01 kcal Atomic # 8 Polarization: -46.98 SS G_CDS: 0.26 Total: -46.72 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Total: -90.05 -0.70 -90.75 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000106819758.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.223 kcal (2) G-P(sol) polarization free energy of solvation -90.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds