Wall clock time and date at job start Wed Apr 1 2020 04:53:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.47157 * 2 1 4 4 C 1.50693 * 109.47072 * 120.00302 * 2 1 3 5 5 H 1.08000 * 119.99681 * 120.00059 * 4 2 1 6 6 C 1.37878 * 120.00074 * 299.99776 * 4 2 1 7 7 N 1.31509 * 120.00160 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99945 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47152 * 180.02562 * 8 6 4 10 10 H 1.48503 * 109.47257 * 300.00302 * 8 6 4 11 11 H 1.48505 * 109.47071 * 59.99970 * 8 6 4 12 12 N 1.46497 * 109.46959 * 240.00562 * 2 1 3 13 13 C 1.34778 * 120.00145 * 85.00123 * 12 2 1 14 14 O 1.21582 * 120.00043 * 359.97438 * 13 12 2 15 15 N 1.34781 * 119.99798 * 179.97438 * 13 12 2 16 16 C 1.39941 * 119.99698 * 175.37648 * 15 13 12 17 17 C 1.38871 * 120.07215 * 214.81111 * 16 15 13 18 18 C 1.38114 * 119.93178 * 179.77118 * 17 16 15 19 19 C 1.38283 * 120.07106 * 0.50553 * 18 17 16 20 20 C 1.50698 * 119.93189 * 179.76584 * 19 18 17 21 21 C 1.52992 * 109.47175 * 269.98409 * 20 19 18 22 22 N 1.46896 * 109.47280 * 179.97438 * 21 20 19 23 23 C 1.47012 * 110.99953 * 293.63650 * 22 21 20 24 24 C 1.53100 * 109.25956 * 177.60646 * 23 22 21 25 25 O 1.43016 * 109.26000 * 56.84667 * 24 23 22 26 26 C 1.43020 * 113.73576 * 301.33046 * 25 24 23 27 27 C 1.47009 * 111.00504 * 169.99772 * 22 21 20 28 28 C 1.38285 * 120.13764 * 359.75208 * 19 18 17 29 29 C 1.38116 * 120.07111 * 359.97438 * 28 19 18 30 30 H 1.08997 * 109.47428 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47011 * 299.99836 * 1 2 3 32 32 H 1.09004 * 109.47070 * 59.99335 * 1 2 3 33 33 H 0.96997 * 120.00226 * 179.97438 * 7 6 4 34 34 H 0.96998 * 120.00320 * 264.99560 * 12 2 1 35 35 H 0.96992 * 120.00370 * 355.37762 * 15 13 12 36 36 H 1.07997 * 120.03049 * 0.02562 * 17 16 15 37 37 H 1.07999 * 119.96656 * 180.26150 * 18 17 16 38 38 H 1.09008 * 109.46774 * 29.98374 * 20 19 18 39 39 H 1.09000 * 109.46772 * 149.98171 * 20 19 18 40 40 H 1.09008 * 109.47240 * 299.99679 * 21 20 19 41 41 H 1.09000 * 109.47465 * 60.00186 * 21 20 19 42 42 H 1.08999 * 109.50628 * 297.53555 * 23 22 21 43 43 H 1.08994 * 109.50896 * 57.66910 * 23 22 21 44 44 H 1.09003 * 109.50802 * 296.91049 * 24 23 22 45 45 H 1.09000 * 109.54179 * 176.80597 * 24 23 22 46 46 H 1.09001 * 109.50465 * 298.73299 * 26 25 24 47 47 H 1.09005 * 109.53855 * 178.62651 * 26 25 24 48 48 H 1.08995 * 109.50861 * 302.32887 * 27 22 21 49 49 H 1.08997 * 109.50786 * 62.41508 * 27 22 21 50 50 H 1.07996 * 119.96587 * 179.97438 * 28 19 18 51 51 H 1.07993 * 120.03669 * 179.97438 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1312 6 6 1.6992 -0.2394 2.4827 7 7 0.9428 0.8295 2.6034 8 14 2.3225 -1.1197 4.0078 9 1 1.8270 -0.4202 5.2204 10 1 1.8281 -2.5200 4.0080 11 1 3.8076 -1.1192 4.0076 12 7 2.0183 -0.6905 -1.1962 13 6 2.1470 -0.0180 -2.3572 14 8 1.8574 1.1615 -2.4118 15 7 2.5967 -0.6532 -3.4575 16 6 2.6390 0.0180 -4.6847 17 6 2.3853 -0.6706 -5.8637 18 6 2.4231 -0.0043 -7.0728 19 6 2.7235 1.3450 -7.1113 20 6 2.7690 2.0679 -8.4328 21 6 4.1865 1.9972 -9.0041 22 7 4.2308 2.7013 -10.2926 23 6 3.4191 2.0052 -11.3015 24 6 3.4449 2.8026 -12.6082 25 8 4.8008 2.9749 -13.0290 26 6 5.6198 3.6501 -12.0704 27 6 5.6160 2.8612 -10.7583 28 6 2.9818 2.0325 -5.9396 29 6 2.9400 1.3731 -4.7267 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5140 -0.8900 33 1 0.7082 1.1607 3.4844 34 1 2.2490 -1.6316 -1.1528 35 1 2.8911 -1.5756 -3.3989 36 1 2.1547 -1.7253 -5.8346 37 1 2.2218 -0.5384 -7.9897 38 1 2.0732 1.5980 -9.1281 39 1 2.4878 3.1107 -8.2863 40 1 4.8823 2.4670 -8.3088 41 1 4.4677 0.9544 -9.1506 42 1 3.8284 1.0099 -11.4744 43 1 2.3919 1.9205 -10.9470 44 1 2.9867 3.7786 -12.4482 45 1 2.8913 2.2622 -13.3761 46 1 5.2247 4.6507 -11.8948 47 1 6.6395 3.7225 -12.4487 48 1 6.1924 3.4014 -10.0073 49 1 6.0607 1.8796 -10.9218 50 1 3.2164 3.0861 -5.9728 51 1 3.1422 1.9104 -3.8120 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157692199.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:19 Heat of formation + Delta-G solvation = -45.457213 kcal Electronic energy + Delta-G solvation = -29348.689321 eV Core-core repulsion = 25247.871368 eV Total energy + Delta-G solvation = -4100.817953 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.29125 -39.93190 -38.62419 -36.57356 -35.22641 -34.34034 -32.65008 -31.98063 -31.53190 -30.80800 -29.24362 -28.18853 -26.15711 -25.26652 -24.46481 -23.17030 -22.75654 -21.65982 -20.81037 -20.53578 -19.83986 -18.21466 -17.48008 -17.06545 -16.56500 -16.02865 -15.78084 -15.62552 -15.47104 -15.21388 -15.01028 -14.86610 -14.42644 -14.27081 -14.17073 -13.67829 -13.48759 -13.31897 -13.08513 -13.01175 -12.67495 -12.41042 -12.29567 -11.85757 -11.82086 -11.66828 -11.46513 -11.31057 -11.12274 -11.03864 -10.99574 -10.78669 -10.75373 -10.35841 -10.25238 -10.13440 -9.90133 -9.39352 -9.07910 -8.83040 -8.77339 -8.58752 -8.09742 -7.68566 -6.14671 -4.24198 1.40121 1.53457 3.17507 3.23884 3.29484 3.29539 3.31784 3.47411 3.66650 4.02939 4.30284 4.43305 4.52997 4.56345 4.72346 4.76383 4.82539 4.91100 4.91924 5.04932 5.07025 5.10222 5.14712 5.17869 5.20087 5.30977 5.36712 5.44872 5.47228 5.50019 5.56615 5.73331 5.87518 5.90691 6.11984 6.38159 6.50239 6.53237 6.56681 6.69990 6.71020 6.76722 6.79806 6.96200 7.10592 7.21376 7.27096 7.43619 7.59576 7.80988 7.97442 8.12967 8.69916 8.82179 9.21127 9.44205 10.91307 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.035269 B = 0.001489 C = 0.001478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.696746 B =18805.584579 C =18939.436648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.280 3.720 3 H 0.050 0.950 4 C -0.535 4.535 5 H 0.060 0.940 6 C 0.067 3.933 7 N -0.882 5.882 8 Si 0.903 3.097 9 H -0.285 1.285 10 H -0.276 1.276 11 H -0.276 1.276 12 N -0.719 5.719 13 C 0.692 3.308 14 O -0.582 6.582 15 N -0.698 5.698 16 C 0.179 3.821 17 C -0.155 4.155 18 C -0.098 4.098 19 C -0.114 4.114 20 C -0.069 4.069 21 C 0.061 3.939 22 N -0.538 5.538 23 C 0.013 3.987 24 C 0.063 3.937 25 O -0.388 6.388 26 C 0.064 3.936 27 C 0.017 3.983 28 C -0.095 4.095 29 C -0.119 4.119 30 H 0.026 0.974 31 H 0.091 0.909 32 H 0.015 0.985 33 H 0.265 0.735 34 H 0.386 0.614 35 H 0.402 0.598 36 H 0.121 0.879 37 H 0.118 0.882 38 H 0.068 0.932 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.037 0.963 42 H 0.042 0.958 43 H 0.090 0.910 44 H 0.060 0.940 45 H 0.097 0.903 46 H 0.060 0.940 47 H 0.097 0.903 48 H 0.087 0.913 49 H 0.042 0.958 50 H 0.122 0.878 51 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.777 0.191 -27.876 28.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.178 3.822 3 H 0.068 0.932 4 C -0.574 4.574 5 H 0.079 0.921 6 C -0.136 4.136 7 N -0.520 5.520 8 Si 0.730 3.270 9 H -0.211 1.211 10 H -0.202 1.202 11 H -0.202 1.202 12 N -0.370 5.370 13 C 0.393 3.607 14 O -0.459 6.459 15 N -0.346 5.346 16 C 0.083 3.917 17 C -0.176 4.176 18 C -0.117 4.117 19 C -0.116 4.116 20 C -0.107 4.107 21 C -0.066 4.066 22 N -0.263 5.263 23 C -0.115 4.115 24 C -0.014 4.014 25 O -0.306 6.306 26 C -0.013 4.013 27 C -0.111 4.111 28 C -0.113 4.113 29 C -0.139 4.139 30 H 0.045 0.955 31 H 0.109 0.891 32 H 0.034 0.966 33 H 0.075 0.925 34 H 0.218 0.782 35 H 0.236 0.764 36 H 0.139 0.861 37 H 0.136 0.864 38 H 0.086 0.914 39 H 0.097 0.903 40 H 0.097 0.903 41 H 0.055 0.945 42 H 0.061 0.939 43 H 0.108 0.892 44 H 0.078 0.922 45 H 0.115 0.885 46 H 0.078 0.922 47 H 0.115 0.885 48 H 0.105 0.895 49 H 0.061 0.939 50 H 0.140 0.860 51 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 6.250 1.799 -27.722 28.475 hybrid contribution 0.704 -2.243 1.223 2.650 sum 6.955 -0.444 -26.499 27.400 Atomic orbital electron populations 1.22103 0.98511 0.99093 1.00956 1.18687 0.90886 0.93756 0.78829 0.93249 1.21161 1.32650 1.13319 0.90257 0.92138 1.24876 0.94792 0.94958 0.99021 1.69889 1.35658 1.22371 1.24053 0.86488 0.79142 0.79555 0.81769 1.21092 1.20182 1.20186 1.45875 1.68540 1.13303 1.09253 1.16169 0.78632 0.85508 0.80411 1.90868 1.57019 1.14101 1.83941 1.42862 1.68526 1.16338 1.06824 1.17592 0.97371 0.92476 0.84307 1.20826 1.04884 1.00250 0.91636 1.20673 1.00379 0.93771 0.96874 1.19649 1.03268 0.94034 0.94633 1.20476 0.95997 1.00970 0.93241 1.22157 0.97994 0.96607 0.89850 1.62216 1.10463 1.50516 1.03151 1.22856 0.99603 0.96195 0.92813 1.22681 0.83535 0.99943 0.95248 1.87985 1.21187 1.78858 1.42602 1.22671 0.95622 0.95252 0.87803 1.22783 0.90005 1.00277 0.98065 1.20933 0.99375 0.99637 0.91400 1.21441 0.99539 0.93852 0.99082 0.95530 0.89073 0.96586 0.92459 0.78184 0.76353 0.86084 0.86407 0.91359 0.90256 0.90279 0.94483 0.93935 0.89156 0.92168 0.88478 0.92160 0.88467 0.89458 0.93941 0.86024 0.83858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.69 9.26 37.16 0.34 -3.35 16 2 C 0.28 7.10 2.56 -69.09 -0.18 6.92 16 3 H 0.05 1.44 7.58 -51.93 -0.39 1.05 16 4 C -0.54 -14.03 8.73 -34.44 -0.30 -14.33 16 5 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 7 N -0.88 -24.67 11.32 55.43 0.63 -24.04 16 8 Si 0.90 20.43 29.54 -169.99 -5.02 15.41 16 9 H -0.29 -6.45 7.11 56.52 0.40 -6.04 16 10 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 11 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 12 N -0.72 -14.83 5.07 -59.82 -0.30 -15.13 16 13 C 0.69 13.99 8.37 -86.91 -0.73 13.27 16 14 O -0.58 -13.97 13.44 5.29 0.07 -13.90 16 15 N -0.70 -10.73 5.34 -14.22 -0.08 -10.81 16 16 C 0.18 2.68 6.30 -83.69 -0.53 2.15 16 17 C -0.15 -1.88 9.97 -39.39 -0.39 -2.27 16 18 C -0.10 -1.06 9.69 -39.61 -0.38 -1.45 16 19 C -0.11 -1.26 5.14 -104.59 -0.54 -1.80 16 20 C -0.07 -0.60 5.28 -27.89 -0.15 -0.74 16 21 C 0.06 0.50 4.94 -3.83 -0.02 0.48 16 22 N -0.54 -4.22 4.73 -234.32 -1.11 -5.33 16 23 C 0.01 0.09 5.44 -3.71 -0.02 0.07 16 24 C 0.06 0.42 7.01 37.21 0.26 0.68 16 25 O -0.39 -3.35 10.83 -35.23 -0.38 -3.73 16 26 C 0.06 0.43 7.01 37.21 0.26 0.69 16 27 C 0.02 0.12 5.64 -3.71 -0.02 0.10 16 28 C -0.09 -1.22 9.69 -39.61 -0.38 -1.60 16 29 C -0.12 -1.87 8.70 -39.39 -0.34 -2.22 16 30 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.09 2.46 6.07 -51.93 -0.32 2.15 16 32 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 34 H 0.39 6.76 8.56 -40.82 -0.35 6.41 16 35 H 0.40 4.74 8.84 -40.82 -0.36 4.38 16 36 H 0.12 1.21 8.06 -52.49 -0.42 0.78 16 37 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 38 H 0.07 0.53 6.46 -51.92 -0.34 0.19 16 39 H 0.08 0.71 8.08 -51.93 -0.42 0.29 16 40 H 0.08 0.66 8.04 -51.92 -0.42 0.25 16 41 H 0.04 0.31 8.12 -51.93 -0.42 -0.11 16 42 H 0.04 0.32 8.14 -51.93 -0.42 -0.11 16 43 H 0.09 0.55 6.38 -51.93 -0.33 0.22 16 44 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 47 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 48 H 0.09 0.53 8.09 -51.93 -0.42 0.11 16 49 H 0.04 0.32 8.14 -51.93 -0.42 -0.11 16 50 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 51 H 0.14 2.64 6.22 -52.49 -0.33 2.31 16 LS Contribution 408.39 15.07 6.15 6.15 Total: -1.00 -31.75 408.39 -11.53 -43.28 By element: Atomic # 1 Polarization: 18.09 SS G_CDS: -8.28 Total: 9.81 kcal Atomic # 6 Polarization: 1.51 SS G_CDS: -3.21 Total: -1.70 kcal Atomic # 7 Polarization: -54.45 SS G_CDS: -0.86 Total: -55.31 kcal Atomic # 8 Polarization: -17.32 SS G_CDS: -0.31 Total: -17.63 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -31.75 -11.53 -43.28 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157692199.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.180 kcal (2) G-P(sol) polarization free energy of solvation -31.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds