Wall clock time and date at job start Wed Apr 1 2020 04:53:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.47157 * 2 1 4 4 C 1.50693 * 109.47072 * 120.00302 * 2 1 3 5 5 H 1.08000 * 119.99681 * 120.00059 * 4 2 1 6 6 C 1.37878 * 120.00074 * 299.99776 * 4 2 1 7 7 N 1.31509 * 120.00160 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99945 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47152 * 180.02562 * 8 6 4 10 10 H 1.48503 * 109.47257 * 300.00302 * 8 6 4 11 11 H 1.48505 * 109.47071 * 59.99970 * 8 6 4 12 12 N 1.46497 * 109.46959 * 240.00562 * 2 1 3 13 13 C 1.34778 * 120.00145 * 85.00123 * 12 2 1 14 14 O 1.21582 * 120.00043 * 359.97438 * 13 12 2 15 15 N 1.34781 * 119.99798 * 179.97438 * 13 12 2 16 16 C 1.39941 * 119.99698 * 175.37648 * 15 13 12 17 17 C 1.38871 * 120.07215 * 214.81111 * 16 15 13 18 18 C 1.38114 * 119.93178 * 179.77118 * 17 16 15 19 19 C 1.38283 * 120.07106 * 0.50553 * 18 17 16 20 20 C 1.50698 * 119.93189 * 179.76584 * 19 18 17 21 21 C 1.52992 * 109.47175 * 269.98409 * 20 19 18 22 22 N 1.46896 * 109.47280 * 179.97438 * 21 20 19 23 23 C 1.47012 * 110.99953 * 293.63650 * 22 21 20 24 24 C 1.53100 * 109.25956 * 177.60646 * 23 22 21 25 25 O 1.43016 * 109.26000 * 56.84667 * 24 23 22 26 26 C 1.43020 * 113.73576 * 301.33046 * 25 24 23 27 27 C 1.47009 * 111.00504 * 169.99772 * 22 21 20 28 28 C 1.38285 * 120.13764 * 359.75208 * 19 18 17 29 29 C 1.38116 * 120.07111 * 359.97438 * 28 19 18 30 30 H 1.08997 * 109.47428 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47011 * 299.99836 * 1 2 3 32 32 H 1.09004 * 109.47070 * 59.99335 * 1 2 3 33 33 H 0.96997 * 120.00226 * 179.97438 * 7 6 4 34 34 H 0.96998 * 120.00320 * 264.99560 * 12 2 1 35 35 H 0.96992 * 120.00370 * 355.37762 * 15 13 12 36 36 H 1.07997 * 120.03049 * 0.02562 * 17 16 15 37 37 H 1.07999 * 119.96656 * 180.26150 * 18 17 16 38 38 H 1.09008 * 109.46774 * 29.98374 * 20 19 18 39 39 H 1.09000 * 109.46772 * 149.98171 * 20 19 18 40 40 H 1.09008 * 109.47240 * 299.99679 * 21 20 19 41 41 H 1.09000 * 109.47465 * 60.00186 * 21 20 19 42 42 H 1.08999 * 109.50628 * 297.53555 * 23 22 21 43 43 H 1.08994 * 109.50896 * 57.66910 * 23 22 21 44 44 H 1.09003 * 109.50802 * 296.91049 * 24 23 22 45 45 H 1.09000 * 109.54179 * 176.80597 * 24 23 22 46 46 H 1.09001 * 109.50465 * 298.73299 * 26 25 24 47 47 H 1.09005 * 109.53855 * 178.62651 * 26 25 24 48 48 H 1.08995 * 109.50861 * 302.32887 * 27 22 21 49 49 H 1.08997 * 109.50786 * 62.41508 * 27 22 21 50 50 H 1.07996 * 119.96587 * 179.97438 * 28 19 18 51 51 H 1.07993 * 120.03669 * 179.97438 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1312 6 6 1.6992 -0.2394 2.4827 7 7 0.9428 0.8295 2.6034 8 14 2.3225 -1.1197 4.0078 9 1 1.8270 -0.4202 5.2204 10 1 1.8281 -2.5200 4.0080 11 1 3.8076 -1.1192 4.0076 12 7 2.0183 -0.6905 -1.1962 13 6 2.1470 -0.0180 -2.3572 14 8 1.8574 1.1615 -2.4118 15 7 2.5967 -0.6532 -3.4575 16 6 2.6390 0.0180 -4.6847 17 6 2.3853 -0.6706 -5.8637 18 6 2.4231 -0.0043 -7.0728 19 6 2.7235 1.3450 -7.1113 20 6 2.7690 2.0679 -8.4328 21 6 4.1865 1.9972 -9.0041 22 7 4.2308 2.7013 -10.2926 23 6 3.4191 2.0052 -11.3015 24 6 3.4449 2.8026 -12.6082 25 8 4.8008 2.9749 -13.0290 26 6 5.6198 3.6501 -12.0704 27 6 5.6160 2.8612 -10.7583 28 6 2.9818 2.0325 -5.9396 29 6 2.9400 1.3731 -4.7267 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5140 -0.8900 33 1 0.7082 1.1607 3.4844 34 1 2.2490 -1.6316 -1.1528 35 1 2.8911 -1.5756 -3.3989 36 1 2.1547 -1.7253 -5.8346 37 1 2.2218 -0.5384 -7.9897 38 1 2.0732 1.5980 -9.1281 39 1 2.4878 3.1107 -8.2863 40 1 4.8823 2.4670 -8.3088 41 1 4.4677 0.9544 -9.1506 42 1 3.8284 1.0099 -11.4744 43 1 2.3919 1.9205 -10.9470 44 1 2.9867 3.7786 -12.4482 45 1 2.8913 2.2622 -13.3761 46 1 5.2247 4.6507 -11.8948 47 1 6.6395 3.7225 -12.4487 48 1 6.1924 3.4014 -10.0073 49 1 6.0607 1.8796 -10.9218 50 1 3.2164 3.0861 -5.9728 51 1 3.1422 1.9104 -3.8120 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157692199.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:19 Heat of formation + Delta-G solvation = -67.164150 kcal Electronic energy + Delta-G solvation = -29349.630604 eV Core-core repulsion = 25247.871368 eV Total energy + Delta-G solvation = -4101.759236 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.60087 -40.58434 -39.80888 -37.40395 -36.78057 -35.77204 -34.40708 -33.05073 -32.09508 -31.81867 -30.83880 -29.25238 -27.35510 -26.94908 -24.99424 -24.28159 -23.73694 -23.01908 -21.78423 -21.49441 -21.26064 -19.81895 -18.77272 -17.85560 -17.65788 -17.14020 -16.95237 -16.66078 -16.42277 -16.20860 -15.99269 -15.94170 -15.60863 -15.51175 -15.11551 -14.95694 -14.56973 -14.38236 -14.31860 -14.05620 -13.93850 -13.70509 -13.28608 -13.02241 -12.98607 -12.85603 -12.73117 -12.48140 -12.41386 -12.27561 -12.25060 -12.16859 -12.14667 -11.69873 -11.41213 -11.27162 -11.12204 -10.94960 -10.64344 -10.60301 -9.85000 -9.81403 -9.39612 -8.88026 -8.17711 -6.35439 0.36474 0.52093 1.45322 1.47613 1.55340 1.78451 2.16671 2.42158 2.70859 2.91906 3.00785 3.12768 3.44445 3.87332 3.93206 3.99749 4.05301 4.09027 4.14117 4.22107 4.26858 4.36031 4.48060 4.53397 4.59039 4.59353 4.64609 4.71697 4.74972 4.78690 4.84219 4.91780 4.92060 4.99930 5.06583 5.07859 5.14056 5.17491 5.34517 5.40036 5.46417 5.57722 5.65339 5.66179 5.75093 5.85437 5.96496 5.98108 6.08262 6.16642 6.19776 6.27135 6.71899 7.22567 7.33498 7.66904 8.88586 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.035269 B = 0.001489 C = 0.001478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.696746 B =18805.584579 C =18939.436648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.288 3.712 3 H -0.001 1.001 4 C -0.548 4.548 5 H 0.075 0.925 6 C 0.015 3.985 7 N -0.917 5.917 8 Si 0.975 3.025 9 H -0.286 1.286 10 H -0.263 1.263 11 H -0.271 1.271 12 N -0.714 5.714 13 C 0.691 3.309 14 O -0.626 6.626 15 N -0.678 5.678 16 C 0.148 3.852 17 C -0.144 4.144 18 C -0.093 4.093 19 C -0.103 4.103 20 C -0.062 4.062 21 C 0.067 3.933 22 N -0.546 5.546 23 C 0.014 3.986 24 C 0.060 3.940 25 O -0.408 6.408 26 C 0.062 3.938 27 C 0.017 3.983 28 C -0.102 4.102 29 C -0.146 4.146 30 H 0.040 0.960 31 H 0.068 0.932 32 H 0.009 0.991 33 H 0.266 0.734 34 H 0.404 0.596 35 H 0.421 0.579 36 H 0.149 0.851 37 H 0.154 0.846 38 H 0.085 0.915 39 H 0.076 0.924 40 H 0.073 0.927 41 H 0.038 0.962 42 H 0.039 0.961 43 H 0.101 0.899 44 H 0.060 0.940 45 H 0.113 0.887 46 H 0.060 0.940 47 H 0.112 0.888 48 H 0.094 0.906 49 H 0.037 0.963 50 H 0.129 0.871 51 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.153 -2.040 -29.885 30.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.184 3.816 3 H 0.017 0.983 4 C -0.586 4.586 5 H 0.093 0.907 6 C -0.185 4.185 7 N -0.555 5.555 8 Si 0.799 3.201 9 H -0.212 1.212 10 H -0.188 1.188 11 H -0.196 1.196 12 N -0.366 5.366 13 C 0.392 3.608 14 O -0.507 6.507 15 N -0.327 5.327 16 C 0.053 3.947 17 C -0.164 4.164 18 C -0.111 4.111 19 C -0.104 4.104 20 C -0.100 4.100 21 C -0.060 4.060 22 N -0.272 5.272 23 C -0.114 4.114 24 C -0.017 4.017 25 O -0.327 6.327 26 C -0.015 4.015 27 C -0.111 4.111 28 C -0.121 4.121 29 C -0.167 4.167 30 H 0.059 0.941 31 H 0.087 0.913 32 H 0.028 0.972 33 H 0.075 0.925 34 H 0.239 0.761 35 H 0.259 0.741 36 H 0.167 0.833 37 H 0.171 0.829 38 H 0.104 0.896 39 H 0.095 0.905 40 H 0.091 0.909 41 H 0.056 0.944 42 H 0.057 0.943 43 H 0.119 0.881 44 H 0.078 0.922 45 H 0.130 0.870 46 H 0.079 0.921 47 H 0.130 0.870 48 H 0.112 0.888 49 H 0.056 0.944 50 H 0.147 0.853 51 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 6.657 -0.490 -29.791 30.530 hybrid contribution 0.610 -1.473 1.678 2.314 sum 7.267 -1.963 -28.114 29.104 Atomic orbital electron populations 1.21915 0.98385 0.99438 0.99484 1.18262 0.90926 0.91692 0.80701 0.98309 1.21490 1.32798 1.13701 0.90618 0.90735 1.25801 0.94840 0.95578 1.02306 1.70046 1.36826 1.23884 1.24727 0.85364 0.78577 0.78690 0.77474 1.21201 1.18811 1.19637 1.45449 1.68860 1.13944 1.08397 1.16281 0.78398 0.84975 0.81165 1.90849 1.58784 1.16242 1.84782 1.42484 1.67521 1.16928 1.05756 1.17840 0.99602 0.92498 0.84800 1.21115 1.03220 1.01474 0.90632 1.21109 0.98682 0.93634 0.97716 1.19925 1.01207 0.94424 0.94846 1.20448 0.96776 1.00658 0.92101 1.22043 0.97366 0.96613 0.90003 1.62219 1.11026 1.50655 1.03260 1.22894 0.99932 0.95874 0.92686 1.22810 0.82973 1.00203 0.95688 1.87957 1.22115 1.79119 1.43523 1.22775 0.96248 0.94980 0.87461 1.22808 0.89701 1.00169 0.98431 1.21047 0.99598 1.00210 0.91222 1.21283 1.01947 0.94728 0.98761 0.94050 0.91343 0.97182 0.92497 0.76130 0.74133 0.83295 0.82888 0.89627 0.90527 0.90895 0.94408 0.94305 0.88084 0.92163 0.86952 0.92142 0.87035 0.88806 0.94432 0.85296 0.87744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.85 9.26 71.98 0.67 -6.18 16 2 C 0.29 15.07 2.56 44.24 0.11 15.18 16 3 H 0.00 -0.06 7.58 -2.38 -0.02 -0.08 16 4 C -0.55 -28.86 8.73 25.60 0.22 -28.64 16 5 H 0.07 3.63 7.74 -2.91 -0.02 3.61 16 6 C 0.02 0.80 5.30 84.66 0.45 1.25 16 7 N -0.92 -52.54 11.32 21.45 0.24 -52.30 16 8 Si 0.97 41.67 29.54 68.60 2.03 43.70 16 9 H -0.29 -12.20 7.11 99.48 0.71 -11.49 16 10 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 11 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 12 N -0.71 -29.88 5.07 -461.42 -2.34 -32.22 16 13 C 0.69 28.78 8.37 179.05 1.50 30.28 16 14 O -0.63 -31.91 13.44 -3.97 -0.05 -31.96 16 15 N -0.68 -20.70 5.34 -317.17 -1.70 -22.39 16 16 C 0.15 4.37 6.30 38.15 0.24 4.61 16 17 C -0.14 -3.10 9.97 22.39 0.22 -2.87 16 18 C -0.09 -1.69 9.69 22.25 0.22 -1.48 16 19 C -0.10 -2.04 5.14 -19.84 -0.10 -2.15 16 20 C -0.06 -0.91 5.28 29.84 0.16 -0.75 16 21 C 0.07 0.95 4.94 86.30 0.43 1.37 16 22 N -0.55 -7.52 4.73 -895.26 -4.23 -11.75 16 23 C 0.01 0.16 5.44 86.32 0.47 0.63 16 24 C 0.06 0.70 7.01 72.02 0.50 1.20 16 25 O -0.41 -6.46 10.83 -148.98 -1.61 -8.07 16 26 C 0.06 0.75 7.01 72.01 0.50 1.25 16 27 C 0.02 0.21 5.64 86.31 0.49 0.70 16 28 C -0.10 -2.64 9.69 22.25 0.22 -2.42 16 29 C -0.15 -4.83 8.70 22.39 0.19 -4.64 16 30 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.07 3.83 6.07 -2.39 -0.01 3.82 16 32 H 0.01 0.47 8.14 -2.38 -0.02 0.45 16 33 H 0.27 14.44 8.31 -92.71 -0.77 13.67 16 34 H 0.40 13.83 8.56 -92.71 -0.79 13.04 16 35 H 0.42 9.31 8.84 -92.71 -0.82 8.49 16 36 H 0.15 2.35 8.06 -2.91 -0.02 2.33 16 37 H 0.15 1.78 8.06 -2.91 -0.02 1.76 16 38 H 0.09 1.00 6.46 -2.38 -0.02 0.99 16 39 H 0.08 1.21 8.08 -2.39 -0.02 1.19 16 40 H 0.07 1.12 8.04 -2.38 -0.02 1.10 16 41 H 0.04 0.54 8.12 -2.39 -0.02 0.52 16 42 H 0.04 0.49 8.14 -2.39 -0.02 0.47 16 43 H 0.10 0.93 6.38 -2.39 -0.02 0.92 16 44 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 45 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 46 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 47 H 0.11 0.96 8.14 -2.38 -0.02 0.94 16 48 H 0.09 1.02 8.09 -2.39 -0.02 1.01 16 49 H 0.04 0.51 8.14 -2.39 -0.02 0.49 16 50 H 0.13 2.99 8.06 -2.91 -0.02 2.97 16 51 H 0.10 4.24 6.22 -2.91 -0.02 4.22 16 Total: -1.00 -71.78 408.39 -1.85 -73.63 By element: Atomic # 1 Polarization: 34.68 SS G_CDS: -0.67 Total: 34.01 kcal Atomic # 6 Polarization: 0.87 SS G_CDS: 6.49 Total: 7.36 kcal Atomic # 7 Polarization: -110.64 SS G_CDS: -8.02 Total: -118.67 kcal Atomic # 8 Polarization: -38.36 SS G_CDS: -1.67 Total: -40.03 kcal Atomic # 14 Polarization: 41.67 SS G_CDS: 2.03 Total: 43.70 kcal Total: -71.78 -1.85 -73.63 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157692199.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.463 kcal (2) G-P(sol) polarization free energy of solvation -71.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds