Wall clock time and date at job start Wed Apr 1 2020 04:53:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.46912 * 2 1 4 4 C 1.50694 * 109.47225 * 239.99794 * 2 1 3 5 5 H 1.08002 * 120.00454 * 239.99782 * 4 2 1 6 6 C 1.37882 * 119.99848 * 60.00243 * 4 2 1 7 7 N 1.31507 * 119.99981 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99866 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.47137 * 359.97438 * 8 6 4 10 10 H 1.48504 * 109.47057 * 119.99831 * 8 6 4 11 11 H 1.48498 * 109.47076 * 239.99831 * 8 6 4 12 12 N 1.46501 * 109.46845 * 119.99925 * 2 1 3 13 13 C 1.34775 * 120.00135 * 274.99779 * 12 2 1 14 14 O 1.21591 * 119.99753 * 0.02562 * 13 12 2 15 15 N 1.34773 * 120.00193 * 179.97438 * 13 12 2 16 16 C 1.39952 * 120.00290 * 184.36055 * 15 13 12 17 17 C 1.38866 * 120.06896 * 324.68047 * 16 15 13 18 18 C 1.38115 * 119.92731 * 179.76750 * 17 16 15 19 19 C 1.38276 * 120.06758 * 0.50086 * 18 17 16 20 20 C 1.50709 * 119.92625 * 179.77126 * 19 18 17 21 21 C 1.52998 * 109.46950 * 269.97554 * 20 19 18 22 22 N 1.46899 * 109.47046 * 179.97438 * 21 20 19 23 23 C 1.47012 * 111.00499 * 293.64089 * 22 21 20 24 24 C 1.53091 * 109.26051 * 177.60712 * 23 22 21 25 25 O 1.43024 * 109.25972 * 56.84513 * 24 23 22 26 26 C 1.43016 * 113.73557 * 301.33024 * 25 24 23 27 27 C 1.47012 * 111.00029 * 170.00151 * 22 21 20 28 28 C 1.38281 * 120.14304 * 359.74892 * 19 18 17 29 29 C 1.38106 * 120.06913 * 359.97438 * 28 19 18 30 30 H 1.08994 * 109.47385 * 299.99825 * 1 2 3 31 31 H 1.08996 * 109.47005 * 60.00492 * 1 2 3 32 32 H 1.09007 * 109.46814 * 179.97438 * 1 2 3 33 33 H 0.97000 * 120.00263 * 180.02562 * 7 6 4 34 34 H 0.97001 * 120.00152 * 95.00625 * 12 2 1 35 35 H 0.96997 * 119.99986 * 4.64840 * 15 13 12 36 36 H 1.07998 * 120.03375 * 359.97438 * 17 16 15 37 37 H 1.08003 * 119.96487 * 180.25380 * 18 17 16 38 38 H 1.08995 * 109.47126 * 29.97654 * 20 19 18 39 39 H 1.08998 * 109.47027 * 149.97861 * 20 19 18 40 40 H 1.08999 * 109.47736 * 300.00185 * 21 20 19 41 41 H 1.08998 * 109.47005 * 60.00293 * 21 20 19 42 42 H 1.09000 * 109.50302 * 297.54086 * 23 22 21 43 43 H 1.08994 * 109.50573 * 57.66667 * 23 22 21 44 44 H 1.09006 * 109.50739 * 296.91498 * 24 23 22 45 45 H 1.08996 * 109.54709 * 176.80179 * 24 23 22 46 46 H 1.08994 * 109.50902 * 298.73000 * 26 25 24 47 47 H 1.09003 * 109.53811 * 178.62249 * 26 25 24 48 48 H 1.09005 * 109.51138 * 302.33059 * 27 22 21 49 49 H 1.08999 * 109.50669 * 62.41413 * 27 22 21 50 50 H 1.08002 * 119.96499 * 179.97438 * 28 19 18 51 51 H 1.07997 * 120.03303 * 179.97438 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6534 -1.5885 -1.1313 6 6 1.6993 -0.2393 -2.4827 7 7 0.9429 0.8296 -2.6034 8 14 2.3226 -1.1196 -4.0079 9 1 3.1485 -2.2856 -3.6037 10 1 1.1679 -1.5867 -4.8165 11 1 3.1474 -0.1858 -4.8160 12 7 2.0183 -0.6906 1.1962 13 6 2.1471 -0.0183 2.3572 14 8 1.8575 1.1614 2.4118 15 7 2.5958 -0.6537 3.4577 16 6 2.6432 0.0192 4.6839 17 6 2.9554 1.3718 4.7237 18 6 2.9967 2.0341 5.9350 19 6 2.7376 1.3495 7.1081 20 6 2.7886 2.0742 8.4285 21 6 4.2067 1.9980 8.9977 22 7 4.2565 2.7049 10.2844 23 6 4.0369 4.1470 10.1022 24 6 4.0374 4.8347 11.4700 25 8 5.2706 4.5550 12.1382 26 6 5.5162 3.1596 12.3329 27 6 5.5307 2.4550 10.9738 28 6 2.4315 0.0015 7.0723 29 6 2.3830 -0.6653 5.8638 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 0.7083 1.1608 -3.4843 34 1 2.2491 -1.6318 1.1527 35 1 2.8898 -1.5762 3.3992 36 1 3.1625 1.9059 3.8082 37 1 3.2354 3.0869 5.9662 38 1 2.5119 3.1181 8.2809 39 1 2.0918 1.6087 9.1256 40 1 4.4835 0.9541 9.1453 41 1 4.9034 2.4635 8.3006 42 1 4.8347 4.5617 9.4861 43 1 3.0765 4.3100 9.6132 44 1 3.2065 4.4584 12.0669 45 1 3.9316 5.9113 11.3369 46 1 4.7284 2.7347 12.9549 47 1 6.4801 3.0241 12.8235 48 1 5.6608 1.3829 11.1211 49 1 6.3525 2.8419 10.3713 50 1 2.2300 -0.5305 7.9904 51 1 2.1443 -1.7182 5.8365 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157692340.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:23 Heat of formation + Delta-G solvation = -45.712011 kcal Electronic energy + Delta-G solvation = -29372.860495 eV Core-core repulsion = 25272.031494 eV Total energy + Delta-G solvation = -4100.829002 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.28938 -39.92383 -38.62494 -36.56750 -35.22657 -34.33894 -32.65119 -31.98178 -31.51907 -30.81333 -29.24306 -28.18664 -26.15611 -25.27227 -24.45215 -23.17080 -22.75469 -21.66770 -20.79177 -20.53795 -19.84164 -18.21596 -17.48014 -17.06003 -16.56293 -16.03200 -15.74298 -15.67545 -15.46484 -15.07813 -15.04067 -14.95323 -14.45911 -14.24014 -14.16520 -13.58634 -13.51829 -13.36426 -13.08602 -13.03330 -12.60779 -12.42067 -12.27608 -11.91787 -11.81352 -11.72462 -11.43859 -11.25264 -11.11676 -11.01859 -10.98661 -10.84715 -10.74557 -10.33863 -10.26434 -10.12616 -9.89273 -9.40009 -9.06684 -8.82111 -8.78204 -8.59768 -8.09947 -7.69000 -6.15467 -4.24729 1.39748 1.53637 3.17487 3.21731 3.29989 3.30170 3.33013 3.48394 3.66602 4.02845 4.29872 4.43978 4.54154 4.57158 4.73086 4.75718 4.86126 4.89205 4.92282 5.05130 5.08278 5.10871 5.15700 5.17363 5.20907 5.32943 5.37374 5.45655 5.46155 5.50817 5.57647 5.72684 5.84592 5.91922 6.12108 6.40369 6.50045 6.52473 6.55742 6.69515 6.72570 6.76393 6.79427 6.95901 7.10389 7.21103 7.26866 7.43352 7.59700 7.80599 7.97207 8.12526 8.69985 8.82039 9.21039 9.43839 10.90634 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.029674 B = 0.001519 C = 0.001501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.374232 B =18429.903804 C =18653.300632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.279 3.721 3 H 0.050 0.950 4 C -0.534 4.534 5 H 0.062 0.938 6 C 0.066 3.934 7 N -0.882 5.882 8 Si 0.903 3.097 9 H -0.273 1.273 10 H -0.282 1.282 11 H -0.283 1.283 12 N -0.719 5.719 13 C 0.692 3.308 14 O -0.582 6.582 15 N -0.698 5.698 16 C 0.179 3.821 17 C -0.118 4.118 18 C -0.097 4.097 19 C -0.114 4.114 20 C -0.069 4.069 21 C 0.061 3.939 22 N -0.538 5.538 23 C 0.013 3.987 24 C 0.063 3.937 25 O -0.388 6.388 26 C 0.064 3.936 27 C 0.017 3.983 28 C -0.096 4.096 29 C -0.154 4.154 30 H 0.015 0.985 31 H 0.091 0.909 32 H 0.026 0.974 33 H 0.264 0.736 34 H 0.386 0.614 35 H 0.402 0.598 36 H 0.143 0.857 37 H 0.119 0.881 38 H 0.069 0.931 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.038 0.962 42 H 0.044 0.956 43 H 0.091 0.909 44 H 0.060 0.940 45 H 0.098 0.902 46 H 0.059 0.941 47 H 0.097 0.903 48 H 0.086 0.914 49 H 0.043 0.957 50 H 0.121 0.879 51 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.922 0.482 27.728 28.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.178 3.822 3 H 0.067 0.933 4 C -0.572 4.572 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.520 5.520 8 Si 0.730 3.270 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.370 5.370 13 C 0.393 3.607 14 O -0.460 6.460 15 N -0.346 5.346 16 C 0.082 3.918 17 C -0.139 4.139 18 C -0.116 4.116 19 C -0.116 4.116 20 C -0.107 4.107 21 C -0.066 4.066 22 N -0.264 5.264 23 C -0.116 4.116 24 C -0.014 4.014 25 O -0.306 6.306 26 C -0.013 4.013 27 C -0.112 4.112 28 C -0.115 4.115 29 C -0.175 4.175 30 H 0.034 0.966 31 H 0.109 0.891 32 H 0.045 0.955 33 H 0.074 0.926 34 H 0.218 0.782 35 H 0.237 0.763 36 H 0.160 0.840 37 H 0.137 0.863 38 H 0.088 0.912 39 H 0.096 0.904 40 H 0.096 0.904 41 H 0.056 0.944 42 H 0.062 0.938 43 H 0.109 0.891 44 H 0.078 0.922 45 H 0.116 0.884 46 H 0.078 0.922 47 H 0.115 0.885 48 H 0.105 0.895 49 H 0.061 0.939 50 H 0.139 0.861 51 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 6.277 1.641 27.827 28.574 hybrid contribution 0.922 -1.386 -1.703 2.381 sum 7.199 0.255 26.124 27.099 Atomic orbital electron populations 1.22103 0.98500 0.99109 1.00957 1.18698 0.90900 0.93762 0.78865 0.93257 1.21240 1.32487 1.13277 0.90229 0.92022 1.24884 0.94806 0.94965 0.99054 1.69911 1.35796 1.22436 1.23836 0.86375 0.78596 0.79487 0.82511 1.19769 1.20850 1.20862 1.45873 1.68542 1.13311 1.09244 1.16169 0.78635 0.85505 0.80412 1.90872 1.57035 1.14115 1.83961 1.42863 1.68582 1.16252 1.06872 1.17587 0.97340 0.92479 0.84355 1.21415 0.99547 0.93901 0.99022 1.20905 0.99636 0.99493 0.91530 1.19650 1.03224 0.94163 0.94517 1.20476 0.96465 1.00324 0.93418 1.22156 0.96990 0.98974 0.88521 1.62233 1.32916 1.09088 1.22114 1.22865 1.02498 0.88132 0.98064 1.22683 0.86757 1.00201 0.91730 1.87990 1.40052 1.23995 1.78566 1.22660 1.01882 0.81370 0.95409 1.22784 0.90707 1.01578 0.96088 1.20697 1.00108 0.93733 0.96971 1.20845 1.04718 1.00344 0.91610 0.96574 0.89079 0.95515 0.92576 0.78171 0.76339 0.83964 0.86311 0.91241 0.90374 0.90390 0.94368 0.93812 0.89091 0.92204 0.88420 0.92227 0.88500 0.89544 0.93893 0.86115 0.86025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.69 9.26 37.16 0.34 -3.35 16 2 C 0.28 7.08 2.56 -69.08 -0.18 6.91 16 3 H 0.05 1.44 7.58 -51.93 -0.39 1.05 16 4 C -0.53 -14.00 8.73 -34.44 -0.30 -14.30 16 5 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.67 16 7 N -0.88 -24.69 11.32 55.43 0.63 -24.06 16 8 Si 0.90 20.45 29.54 -169.99 -5.02 15.43 16 9 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 10 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 11 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 12 N -0.72 -14.83 5.07 -59.81 -0.30 -15.14 16 13 C 0.69 14.00 8.37 -86.92 -0.73 13.28 16 14 O -0.58 -14.00 13.46 5.29 0.07 -13.93 16 15 N -0.70 -10.73 5.34 -14.22 -0.08 -10.81 16 16 C 0.18 2.67 6.29 -83.69 -0.53 2.15 16 17 C -0.12 -1.87 8.69 -39.39 -0.34 -2.22 16 18 C -0.10 -1.25 9.69 -39.61 -0.38 -1.63 16 19 C -0.11 -1.25 5.14 -104.59 -0.54 -1.79 16 20 C -0.07 -0.60 5.28 -27.88 -0.15 -0.74 16 21 C 0.06 0.49 4.94 -3.83 -0.02 0.48 16 22 N -0.54 -4.22 4.73 -234.32 -1.11 -5.33 16 23 C 0.01 0.09 5.44 -3.72 -0.02 0.07 16 24 C 0.06 0.44 7.01 37.20 0.26 0.70 16 25 O -0.39 -3.41 10.83 -35.23 -0.38 -3.80 16 26 C 0.06 0.42 7.01 37.21 0.26 0.68 16 27 C 0.02 0.12 5.64 -3.71 -0.02 0.09 16 28 C -0.10 -1.04 9.69 -39.61 -0.38 -1.42 16 29 C -0.15 -1.86 9.97 -39.40 -0.39 -2.25 16 30 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.09 2.46 6.07 -51.93 -0.32 2.15 16 32 H 0.03 0.62 8.14 -51.92 -0.42 0.19 16 33 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 34 H 0.39 6.77 8.56 -40.82 -0.35 6.42 16 35 H 0.40 4.73 8.84 -40.82 -0.36 4.37 16 36 H 0.14 2.63 6.25 -52.49 -0.33 2.30 16 37 H 0.12 1.34 8.06 -52.48 -0.42 0.92 16 38 H 0.07 0.58 6.46 -51.93 -0.34 0.25 16 39 H 0.08 0.65 8.08 -51.93 -0.42 0.23 16 40 H 0.08 0.61 8.04 -51.93 -0.42 0.20 16 41 H 0.04 0.34 8.12 -51.93 -0.42 -0.08 16 42 H 0.04 0.36 8.14 -51.93 -0.42 -0.07 16 43 H 0.09 0.61 6.38 -51.93 -0.33 0.27 16 44 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 45 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 47 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.09 0.50 8.09 -51.93 -0.42 0.08 16 49 H 0.04 0.33 8.14 -51.93 -0.42 -0.10 16 50 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 51 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 LS Contribution 408.43 15.07 6.16 6.16 Total: -1.00 -31.85 408.43 -11.53 -43.38 By element: Atomic # 1 Polarization: 18.06 SS G_CDS: -8.28 Total: 9.77 kcal Atomic # 6 Polarization: 1.54 SS G_CDS: -3.21 Total: -1.67 kcal Atomic # 7 Polarization: -54.47 SS G_CDS: -0.86 Total: -55.33 kcal Atomic # 8 Polarization: -17.42 SS G_CDS: -0.31 Total: -17.73 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -31.85 -11.53 -43.38 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157692340.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.336 kcal (2) G-P(sol) polarization free energy of solvation -31.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds