Wall clock time and date at job start Wed Apr 1 2020 04:53:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.46912 * 2 1 4 4 C 1.50694 * 109.47225 * 239.99794 * 2 1 3 5 5 H 1.08002 * 120.00454 * 239.99782 * 4 2 1 6 6 C 1.37882 * 119.99848 * 60.00243 * 4 2 1 7 7 N 1.31507 * 119.99981 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99866 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.47137 * 359.97438 * 8 6 4 10 10 H 1.48504 * 109.47057 * 119.99831 * 8 6 4 11 11 H 1.48498 * 109.47076 * 239.99831 * 8 6 4 12 12 N 1.46501 * 109.46845 * 119.99925 * 2 1 3 13 13 C 1.34775 * 120.00135 * 274.99779 * 12 2 1 14 14 O 1.21591 * 119.99753 * 0.02562 * 13 12 2 15 15 N 1.34773 * 120.00193 * 179.97438 * 13 12 2 16 16 C 1.39952 * 120.00290 * 184.36055 * 15 13 12 17 17 C 1.38866 * 120.06896 * 324.68047 * 16 15 13 18 18 C 1.38115 * 119.92731 * 179.76750 * 17 16 15 19 19 C 1.38276 * 120.06758 * 0.50086 * 18 17 16 20 20 C 1.50709 * 119.92625 * 179.77126 * 19 18 17 21 21 C 1.52998 * 109.46950 * 269.97554 * 20 19 18 22 22 N 1.46899 * 109.47046 * 179.97438 * 21 20 19 23 23 C 1.47012 * 111.00499 * 293.64089 * 22 21 20 24 24 C 1.53091 * 109.26051 * 177.60712 * 23 22 21 25 25 O 1.43024 * 109.25972 * 56.84513 * 24 23 22 26 26 C 1.43016 * 113.73557 * 301.33024 * 25 24 23 27 27 C 1.47012 * 111.00029 * 170.00151 * 22 21 20 28 28 C 1.38281 * 120.14304 * 359.74892 * 19 18 17 29 29 C 1.38106 * 120.06913 * 359.97438 * 28 19 18 30 30 H 1.08994 * 109.47385 * 299.99825 * 1 2 3 31 31 H 1.08996 * 109.47005 * 60.00492 * 1 2 3 32 32 H 1.09007 * 109.46814 * 179.97438 * 1 2 3 33 33 H 0.97000 * 120.00263 * 180.02562 * 7 6 4 34 34 H 0.97001 * 120.00152 * 95.00625 * 12 2 1 35 35 H 0.96997 * 119.99986 * 4.64840 * 15 13 12 36 36 H 1.07998 * 120.03375 * 359.97438 * 17 16 15 37 37 H 1.08003 * 119.96487 * 180.25380 * 18 17 16 38 38 H 1.08995 * 109.47126 * 29.97654 * 20 19 18 39 39 H 1.08998 * 109.47027 * 149.97861 * 20 19 18 40 40 H 1.08999 * 109.47736 * 300.00185 * 21 20 19 41 41 H 1.08998 * 109.47005 * 60.00293 * 21 20 19 42 42 H 1.09000 * 109.50302 * 297.54086 * 23 22 21 43 43 H 1.08994 * 109.50573 * 57.66667 * 23 22 21 44 44 H 1.09006 * 109.50739 * 296.91498 * 24 23 22 45 45 H 1.08996 * 109.54709 * 176.80179 * 24 23 22 46 46 H 1.08994 * 109.50902 * 298.73000 * 26 25 24 47 47 H 1.09003 * 109.53811 * 178.62249 * 26 25 24 48 48 H 1.09005 * 109.51138 * 302.33059 * 27 22 21 49 49 H 1.08999 * 109.50669 * 62.41413 * 27 22 21 50 50 H 1.08002 * 119.96499 * 179.97438 * 28 19 18 51 51 H 1.07997 * 120.03303 * 179.97438 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6534 -1.5885 -1.1313 6 6 1.6993 -0.2393 -2.4827 7 7 0.9429 0.8296 -2.6034 8 14 2.3226 -1.1196 -4.0079 9 1 3.1485 -2.2856 -3.6037 10 1 1.1679 -1.5867 -4.8165 11 1 3.1474 -0.1858 -4.8160 12 7 2.0183 -0.6906 1.1962 13 6 2.1471 -0.0183 2.3572 14 8 1.8575 1.1614 2.4118 15 7 2.5958 -0.6537 3.4577 16 6 2.6432 0.0192 4.6839 17 6 2.9554 1.3718 4.7237 18 6 2.9967 2.0341 5.9350 19 6 2.7376 1.3495 7.1081 20 6 2.7886 2.0742 8.4285 21 6 4.2067 1.9980 8.9977 22 7 4.2565 2.7049 10.2844 23 6 4.0369 4.1470 10.1022 24 6 4.0374 4.8347 11.4700 25 8 5.2706 4.5550 12.1382 26 6 5.5162 3.1596 12.3329 27 6 5.5307 2.4550 10.9738 28 6 2.4315 0.0015 7.0723 29 6 2.3830 -0.6653 5.8638 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 0.7083 1.1608 -3.4843 34 1 2.2491 -1.6318 1.1527 35 1 2.8898 -1.5762 3.3992 36 1 3.1625 1.9059 3.8082 37 1 3.2354 3.0869 5.9662 38 1 2.5119 3.1181 8.2809 39 1 2.0918 1.6087 9.1256 40 1 4.4835 0.9541 9.1453 41 1 4.9034 2.4635 8.3006 42 1 4.8347 4.5617 9.4861 43 1 3.0765 4.3100 9.6132 44 1 3.2065 4.4584 12.0669 45 1 3.9316 5.9113 11.3369 46 1 4.7284 2.7347 12.9549 47 1 6.4801 3.0241 12.8235 48 1 5.6608 1.3829 11.1211 49 1 6.3525 2.8419 10.3713 50 1 2.2300 -0.5305 7.9904 51 1 2.1443 -1.7182 5.8365 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157692340.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:22 Heat of formation + Delta-G solvation = -67.550425 kcal Electronic energy + Delta-G solvation = -29373.807480 eV Core-core repulsion = 25272.031494 eV Total energy + Delta-G solvation = -4101.775986 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.60067 -40.59012 -39.81210 -37.40682 -36.78501 -35.77256 -34.41164 -33.05241 -32.10384 -31.82325 -30.84340 -29.25669 -27.36308 -26.95291 -24.99986 -24.28658 -23.73818 -23.02169 -21.79493 -21.47803 -21.27579 -19.82358 -18.77567 -17.86894 -17.66238 -17.14086 -16.96910 -16.67709 -16.44590 -16.13667 -15.99772 -15.90764 -15.71565 -15.50445 -15.15151 -14.91595 -14.52451 -14.42753 -14.33650 -14.08901 -13.91613 -13.71900 -13.23411 -13.05996 -12.98892 -12.87292 -12.73769 -12.54896 -12.41555 -12.31645 -12.28458 -12.11872 -12.03615 -11.70137 -11.45369 -11.27773 -11.10501 -10.94550 -10.64818 -10.62347 -9.85313 -9.81420 -9.42787 -8.88540 -8.18717 -6.36158 0.36252 0.52166 1.44455 1.45073 1.57145 1.78529 2.16430 2.41436 2.70101 2.91759 3.00171 3.12070 3.44311 3.86880 3.92403 3.98774 4.04534 4.08322 4.17780 4.21272 4.24079 4.35466 4.47963 4.53630 4.56336 4.61233 4.66633 4.69427 4.74294 4.77608 4.83767 4.91208 4.91656 4.99566 5.05174 5.07453 5.12899 5.19126 5.34268 5.40155 5.46720 5.57758 5.64880 5.65927 5.73917 5.85028 5.94875 5.96030 6.07822 6.16581 6.19500 6.26865 6.71816 7.22454 7.32921 7.66712 8.88080 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.029674 B = 0.001519 C = 0.001501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.374232 B =18429.903804 C =18653.300632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.287 3.713 3 H -0.001 1.001 4 C -0.546 4.546 5 H 0.075 0.925 6 C 0.014 3.986 7 N -0.917 5.917 8 Si 0.975 3.025 9 H -0.259 1.259 10 H -0.278 1.278 11 H -0.285 1.285 12 N -0.714 5.714 13 C 0.691 3.309 14 O -0.626 6.626 15 N -0.678 5.678 16 C 0.147 3.853 17 C -0.147 4.147 18 C -0.105 4.105 19 C -0.102 4.102 20 C -0.062 4.062 21 C 0.066 3.934 22 N -0.540 5.540 23 C 0.012 3.988 24 C 0.062 3.938 25 O -0.410 6.410 26 C 0.061 3.939 27 C 0.016 3.984 28 C -0.090 4.090 29 C -0.143 4.143 30 H 0.009 0.991 31 H 0.068 0.932 32 H 0.041 0.959 33 H 0.266 0.734 34 H 0.404 0.596 35 H 0.421 0.579 36 H 0.103 0.897 37 H 0.125 0.875 38 H 0.071 0.929 39 H 0.091 0.909 40 H 0.086 0.914 41 H 0.025 0.975 42 H 0.031 0.969 43 H 0.098 0.902 44 H 0.065 0.935 45 H 0.109 0.891 46 H 0.065 0.935 47 H 0.112 0.888 48 H 0.101 0.899 49 H 0.032 0.968 50 H 0.157 0.843 51 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.265 -1.980 29.917 30.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.184 3.816 3 H 0.017 0.983 4 C -0.584 4.584 5 H 0.093 0.907 6 C -0.186 4.186 7 N -0.556 5.556 8 Si 0.799 3.201 9 H -0.183 1.183 10 H -0.204 1.204 11 H -0.211 1.211 12 N -0.366 5.366 13 C 0.392 3.608 14 O -0.507 6.507 15 N -0.327 5.327 16 C 0.052 3.948 17 C -0.167 4.167 18 C -0.124 4.124 19 C -0.104 4.104 20 C -0.100 4.100 21 C -0.061 4.061 22 N -0.266 5.266 23 C -0.116 4.116 24 C -0.015 4.015 25 O -0.329 6.329 26 C -0.015 4.015 27 C -0.112 4.112 28 C -0.109 4.109 29 C -0.163 4.163 30 H 0.028 0.972 31 H 0.086 0.914 32 H 0.060 0.940 33 H 0.075 0.925 34 H 0.239 0.761 35 H 0.259 0.741 36 H 0.121 0.879 37 H 0.143 0.857 38 H 0.089 0.911 39 H 0.110 0.890 40 H 0.104 0.896 41 H 0.044 0.956 42 H 0.050 0.950 43 H 0.116 0.884 44 H 0.083 0.917 45 H 0.127 0.873 46 H 0.083 0.917 47 H 0.130 0.870 48 H 0.119 0.881 49 H 0.050 0.950 50 H 0.175 0.825 51 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 6.651 -0.880 30.078 30.817 hybrid contribution 0.840 -0.550 -2.218 2.435 sum 7.492 -1.431 27.860 28.885 Atomic orbital electron populations 1.21915 0.98369 0.99471 0.99476 1.18272 0.90944 0.91688 0.80734 0.98333 1.21552 1.32622 1.13616 0.90587 0.90709 1.25808 0.94865 0.95589 1.02336 1.70060 1.36942 1.23945 1.24610 0.85255 0.78066 0.78464 0.78267 1.18315 1.20385 1.21065 1.45446 1.68862 1.13951 1.08385 1.16284 0.78403 0.84968 0.81172 1.90852 1.58808 1.16271 1.84804 1.42484 1.67569 1.16844 1.05795 1.17839 0.99564 0.92484 0.84874 1.21255 1.01995 0.94823 0.98664 1.21017 0.99930 1.00038 0.91404 1.19928 1.01171 0.94588 0.94686 1.20453 0.97114 1.00269 0.92161 1.22071 0.96219 0.99356 0.88467 1.62262 1.33384 1.09159 1.21746 1.22889 1.02393 0.88054 0.98270 1.22778 0.86383 1.00963 0.91337 1.87962 1.40829 1.25285 1.78797 1.22801 1.02926 0.80429 0.95357 1.22840 0.89905 1.02481 0.95961 1.21141 0.98340 0.93537 0.97833 1.21143 1.03013 1.01583 0.90572 0.97172 0.91365 0.94005 0.92507 0.76113 0.74102 0.87908 0.85670 0.91079 0.89042 0.89597 0.95650 0.95030 0.88396 0.91696 0.87326 0.91715 0.87023 0.88080 0.94953 0.82519 0.83167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.86 9.26 71.98 0.67 -6.19 16 2 C 0.29 15.05 2.56 44.25 0.11 15.16 16 3 H 0.00 -0.08 7.58 -2.39 -0.02 -0.10 16 4 C -0.55 -28.76 8.73 25.60 0.22 -28.53 16 5 H 0.07 3.66 7.74 -2.91 -0.02 3.64 16 6 C 0.01 0.76 5.30 84.66 0.45 1.20 16 7 N -0.92 -52.63 11.32 21.45 0.24 -52.39 16 8 Si 0.97 41.76 29.54 68.60 2.03 43.79 16 9 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 10 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 11 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 12 N -0.71 -29.90 5.07 -461.41 -2.34 -32.24 16 13 C 0.69 28.81 8.37 179.06 1.50 30.31 16 14 O -0.63 -32.01 13.46 -4.00 -0.05 -32.07 16 15 N -0.68 -20.69 5.34 -317.18 -1.69 -22.38 16 16 C 0.15 4.36 6.29 38.14 0.24 4.60 16 17 C -0.15 -4.86 8.69 22.39 0.19 -4.66 16 18 C -0.11 -2.74 9.69 22.25 0.22 -2.52 16 19 C -0.10 -2.04 5.14 -19.84 -0.10 -2.14 16 20 C -0.06 -0.91 5.28 29.85 0.16 -0.76 16 21 C 0.07 0.94 4.94 86.30 0.43 1.36 16 22 N -0.54 -7.42 4.73 -895.26 -4.23 -11.65 16 23 C 0.01 0.16 5.44 86.31 0.47 0.63 16 24 C 0.06 0.79 7.01 72.01 0.50 1.29 16 25 O -0.41 -6.75 10.83 -148.98 -1.61 -8.36 16 26 C 0.06 0.71 7.01 72.01 0.50 1.22 16 27 C 0.02 0.20 5.64 86.31 0.49 0.68 16 28 C -0.09 -1.62 9.69 22.25 0.22 -1.41 16 29 C -0.14 -3.04 9.97 22.39 0.22 -2.82 16 30 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.07 3.82 6.07 -2.39 -0.01 3.81 16 32 H 0.04 1.96 8.14 -2.38 -0.02 1.94 16 33 H 0.27 14.37 8.31 -92.71 -0.77 13.60 16 34 H 0.40 13.85 8.56 -92.71 -0.79 13.05 16 35 H 0.42 9.29 8.84 -92.71 -0.82 8.47 16 36 H 0.10 4.19 6.25 -2.91 -0.02 4.17 16 37 H 0.13 2.94 8.06 -2.91 -0.02 2.92 16 38 H 0.07 1.05 6.46 -2.39 -0.02 1.03 16 39 H 0.09 1.17 8.08 -2.39 -0.02 1.15 16 40 H 0.09 1.09 8.04 -2.39 -0.02 1.07 16 41 H 0.03 0.43 8.12 -2.39 -0.02 0.41 16 42 H 0.03 0.50 8.14 -2.39 -0.02 0.48 16 43 H 0.10 1.16 6.38 -2.39 -0.02 1.15 16 44 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 45 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 46 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 47 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 48 H 0.10 0.91 8.09 -2.38 -0.02 0.90 16 49 H 0.03 0.46 8.14 -2.39 -0.02 0.44 16 50 H 0.16 1.77 8.06 -2.91 -0.02 1.75 16 51 H 0.15 2.33 8.06 -2.91 -0.02 2.30 16 Total: -1.00 -72.22 408.43 -1.85 -74.07 By element: Atomic # 1 Polarization: 34.46 SS G_CDS: -0.67 Total: 33.79 kcal Atomic # 6 Polarization: 0.95 SS G_CDS: 6.49 Total: 7.44 kcal Atomic # 7 Polarization: -110.64 SS G_CDS: -8.02 Total: -118.66 kcal Atomic # 8 Polarization: -38.76 SS G_CDS: -1.67 Total: -40.43 kcal Atomic # 14 Polarization: 41.76 SS G_CDS: 2.03 Total: 43.79 kcal Total: -72.22 -1.85 -74.07 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157692340.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.516 kcal (2) G-P(sol) polarization free energy of solvation -72.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds