Wall clock time and date at job start Wed Apr 1 2020 04:51:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09003 * 109.46807 * 2 1 4 4 C 1.50699 * 109.46988 * 119.99181 * 2 1 3 5 5 H 1.08005 * 119.99825 * 115.83881 * 4 2 1 6 6 C 1.37876 * 120.00380 * 295.83828 * 4 2 1 7 7 N 1.31518 * 119.99577 * 354.47787 * 6 4 2 8 8 Si 1.86801 * 120.00336 * 174.75752 * 6 4 2 9 9 H 1.48501 * 109.46995 * 264.76923 * 8 6 4 10 10 H 1.48500 * 109.46958 * 24.77150 * 8 6 4 11 11 H 1.48494 * 109.47149 * 144.77369 * 8 6 4 12 12 N 1.46895 * 109.47769 * 239.99508 * 2 1 3 13 13 C 1.46894 * 111.00505 * 183.95366 * 12 2 1 14 14 C 1.46899 * 110.99816 * 59.99822 * 12 2 1 15 15 C 1.50703 * 109.46934 * 190.00383 * 14 12 2 16 16 O 1.21280 * 120.00216 * 359.97438 * 15 14 12 17 17 N 1.34778 * 119.99707 * 180.02562 * 15 14 12 18 18 C 1.46499 * 120.00377 * 359.97438 * 17 15 14 19 19 C 1.52997 * 109.47099 * 89.99879 * 18 17 15 20 20 C 1.50702 * 109.47092 * 180.02562 * 19 18 17 21 21 N 1.34777 * 119.99914 * 180.02562 * 20 19 18 22 22 O 1.21276 * 120.00138 * 0.02562 * 20 19 18 23 23 C 1.46507 * 119.99967 * 180.02562 * 17 15 14 24 24 C 1.50696 * 109.47182 * 89.99608 * 23 17 15 25 25 C 1.38241 * 119.99947 * 269.72522 * 24 23 17 26 26 C 1.38235 * 119.99464 * 179.76636 * 25 24 23 27 27 C 1.38236 * 120.00413 * 0.51215 * 26 25 24 28 28 C 1.38239 * 119.99836 * 359.74581 * 27 26 25 29 29 C 1.38233 * 119.99825 * 359.97438 * 28 27 26 30 30 H 1.08997 * 109.47543 * 294.36817 * 1 2 3 31 31 H 1.09005 * 109.46822 * 54.37248 * 1 2 3 32 32 H 1.09001 * 109.47137 * 174.36546 * 1 2 3 33 33 H 0.97002 * 119.99859 * 180.27523 * 7 6 4 34 34 H 1.09003 * 109.47263 * 59.99771 * 13 12 2 35 35 H 1.08998 * 109.47349 * 179.97438 * 13 12 2 36 36 H 1.08999 * 109.47109 * 300.00073 * 13 12 2 37 37 H 1.09003 * 109.47289 * 309.99903 * 14 12 2 38 38 H 1.08998 * 109.47114 * 70.00468 * 14 12 2 39 39 H 1.08997 * 109.47461 * 210.00452 * 18 17 15 40 40 H 1.09003 * 109.46763 * 330.00187 * 18 17 15 41 41 H 1.08997 * 109.47432 * 300.00591 * 19 18 17 42 42 H 1.09003 * 109.47061 * 60.00491 * 19 18 17 43 43 H 0.97005 * 120.00132 * 0.02562 * 21 20 19 44 44 H 0.97001 * 120.00167 * 179.97438 * 21 20 19 45 45 H 1.09000 * 109.47222 * 209.99853 * 23 17 15 46 46 H 1.09001 * 109.46483 * 329.99829 * 23 17 15 47 47 H 1.07997 * 120.00086 * 0.02562 * 25 24 23 48 48 H 1.08005 * 119.99559 * 180.22898 * 26 25 24 49 49 H 1.07991 * 119.99759 * 179.72098 * 27 26 25 50 50 H 1.07993 * 120.00171 * 179.97438 * 28 27 26 51 51 H 1.08005 * 119.99943 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0322 -0.7102 1.2306 5 1 2.5966 -1.6259 1.1330 6 6 1.7714 -0.1911 2.4810 7 7 1.1798 0.9777 2.5973 8 14 2.2653 -1.1443 4.0097 9 1 1.1077 -1.9391 4.4929 10 1 3.3901 -2.0569 3.6821 11 1 2.6906 -0.1948 5.0692 12 7 2.0197 -0.6925 -1.1993 13 6 3.4851 -0.7945 -1.1869 14 6 1.5487 -0.0266 -2.4210 15 6 1.8581 -0.8915 -3.6157 16 8 2.4164 -1.9574 -3.4644 17 7 1.5153 -0.4798 -4.8525 18 6 0.8414 0.8080 -5.0354 19 6 1.8869 1.9066 -5.2375 20 6 1.1937 3.2315 -5.4250 21 7 1.9196 4.3499 -5.6216 22 8 -0.0173 3.2913 -5.3990 23 6 1.8155 -1.3209 -6.0139 24 6 0.6571 -2.2486 -6.2752 25 6 0.6220 -3.4954 -5.6790 26 6 -0.4430 -4.3445 -5.9149 27 6 -1.4677 -3.9511 -6.7553 28 6 -1.4299 -2.7065 -7.3557 29 6 -0.3677 -1.8551 -7.1153 30 1 -0.3634 0.4240 0.9361 31 1 -0.3633 0.5987 -0.8354 32 1 -0.3633 -1.0227 -0.1009 33 1 0.9999 1.3448 3.4770 34 1 3.8030 -1.3531 -0.3064 35 1 3.8210 -1.3118 -2.0856 36 1 3.9186 0.2051 -1.1590 37 1 0.4723 0.1321 -2.3564 38 1 2.0520 0.9344 -2.5280 39 1 0.1931 0.7580 -5.9102 40 1 0.2433 1.0337 -4.1524 41 1 2.5352 1.9566 -4.3627 42 1 2.4850 1.6809 -6.1204 43 1 2.8882 4.3021 -5.6427 44 1 1.4734 5.2027 -5.7426 45 1 1.9794 -0.6894 -6.8871 46 1 2.7129 -1.9070 -5.8157 47 1 1.4245 -3.8043 -5.0256 48 1 -0.4723 -5.3171 -5.4461 49 1 -2.2974 -4.6163 -6.9431 50 1 -2.2301 -2.3994 -8.0126 51 1 -0.3380 -0.8829 -7.5847 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161946852.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:40 Heat of formation + Delta-G solvation = -36.042627 kcal Electronic energy + Delta-G solvation = -31397.116870 eV Core-core repulsion = 27296.707165 eV Total energy + Delta-G solvation = -4100.409706 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.34215 -39.51199 -38.86366 -36.63578 -35.66707 -33.92661 -32.84669 -32.37537 -30.91214 -30.44977 -29.31500 -28.28412 -26.13967 -24.85012 -24.28230 -23.29186 -22.54726 -21.47805 -20.74112 -19.69098 -18.74056 -17.68489 -17.22487 -17.02103 -16.60092 -16.24972 -15.82777 -15.56154 -15.43514 -15.11171 -14.84959 -14.65224 -14.06932 -13.80095 -13.63027 -13.49223 -13.39125 -13.30432 -13.07135 -12.64146 -12.59030 -12.40144 -12.22048 -11.97272 -11.59070 -11.46839 -11.28902 -11.01371 -10.99480 -10.94343 -10.79342 -10.59409 -10.27323 -10.15615 -10.13053 -9.96033 -9.94431 -9.33401 -8.93398 -8.89930 -8.75022 -8.64706 -8.41129 -7.14019 -6.01017 -4.02627 1.24540 1.39570 2.39632 2.88766 2.95092 3.33481 3.40111 3.42304 3.44928 3.85118 4.43311 4.52840 4.59731 4.71378 4.76139 4.83876 4.96028 4.96862 5.08592 5.16120 5.19517 5.29699 5.33354 5.42408 5.44875 5.59137 5.65922 5.74767 5.80930 5.93516 5.95453 6.04359 6.33207 6.41314 6.46939 6.49155 6.50502 6.54542 6.60547 6.76965 6.92560 6.97972 7.01191 7.02395 7.14469 7.38986 7.48962 7.69206 7.85738 7.99542 8.15609 8.29367 8.48741 8.62469 9.04987 9.61718 11.07853 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008570 B = 0.003338 C = 0.002658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3266.515971 B = 8385.839486 C =10531.654279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.212 3.788 3 H 0.004 0.996 4 C -0.501 4.501 5 H 0.065 0.935 6 C 0.059 3.941 7 N -0.894 5.894 8 Si 0.895 3.105 9 H -0.281 1.281 10 H -0.273 1.273 11 H -0.288 1.288 12 N -0.519 5.519 13 C 0.037 3.963 14 C 0.035 3.965 15 C 0.519 3.481 16 O -0.511 6.511 17 N -0.617 5.617 18 C 0.126 3.874 19 C -0.165 4.165 20 C 0.522 3.478 21 N -0.857 5.857 22 O -0.541 6.541 23 C 0.156 3.844 24 C -0.106 4.106 25 C -0.091 4.091 26 C -0.123 4.123 27 C -0.119 4.119 28 C -0.127 4.127 29 C -0.108 4.108 30 H 0.075 0.925 31 H 0.009 0.991 32 H 0.037 0.963 33 H 0.260 0.740 34 H 0.075 0.925 35 H 0.060 0.940 36 H 0.003 0.997 37 H 0.101 0.899 38 H 0.046 0.954 39 H 0.086 0.914 40 H 0.091 0.909 41 H 0.100 0.900 42 H 0.098 0.902 43 H 0.402 0.598 44 H 0.401 0.599 45 H 0.080 0.920 46 H 0.092 0.908 47 H 0.130 0.870 48 H 0.121 0.879 49 H 0.118 0.882 50 H 0.119 0.881 51 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.961 1.602 -23.227 23.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.106 3.894 3 H 0.021 0.979 4 C -0.540 4.540 5 H 0.083 0.917 6 C -0.142 4.142 7 N -0.533 5.533 8 Si 0.723 3.277 9 H -0.207 1.207 10 H -0.198 1.198 11 H -0.214 1.214 12 N -0.244 5.244 13 C -0.112 4.112 14 C -0.096 4.096 15 C 0.308 3.692 16 O -0.385 6.385 17 N -0.352 5.352 18 C 0.002 3.998 19 C -0.206 4.206 20 C 0.306 3.694 21 N -0.421 5.421 22 O -0.417 6.417 23 C 0.034 3.966 24 C -0.107 4.107 25 C -0.110 4.110 26 C -0.141 4.141 27 C -0.138 4.138 28 C -0.145 4.145 29 C -0.127 4.127 30 H 0.094 0.906 31 H 0.028 0.972 32 H 0.056 0.944 33 H 0.070 0.930 34 H 0.093 0.907 35 H 0.079 0.921 36 H 0.022 0.978 37 H 0.119 0.881 38 H 0.064 0.936 39 H 0.104 0.896 40 H 0.109 0.891 41 H 0.119 0.881 42 H 0.116 0.884 43 H 0.230 0.770 44 H 0.232 0.768 45 H 0.099 0.901 46 H 0.110 0.890 47 H 0.148 0.852 48 H 0.139 0.861 49 H 0.136 0.864 50 H 0.137 0.863 51 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 0.251 0.499 -22.898 22.904 hybrid contribution 0.705 0.944 0.811 1.431 sum 0.956 1.444 -22.086 22.154 Atomic orbital electron populations 1.21810 0.98039 0.98941 1.00069 1.19297 0.91979 0.92304 0.85791 0.97886 1.21130 1.34129 1.09060 0.89637 0.91698 1.24928 0.95421 0.94844 0.98996 1.69951 1.43066 1.16745 1.23569 0.86523 0.78826 0.79716 0.82607 1.20705 1.19816 1.21425 1.61879 1.10260 1.51782 1.00476 1.22307 0.87822 0.98530 1.02512 1.22063 1.02646 0.94419 0.90509 1.21072 0.77455 0.87131 0.83526 1.90618 1.40354 1.22798 1.84718 1.48124 1.61320 1.19419 1.06374 1.21256 0.93122 0.80839 1.04596 1.22156 1.00752 0.92663 1.05041 1.20541 0.87609 0.86170 0.75048 1.43898 1.11167 1.10469 1.76566 1.90780 1.14082 1.86897 1.49940 1.20283 0.95847 0.92270 0.88241 1.20246 0.97244 0.95377 0.97825 1.21271 0.98567 0.93352 0.97787 1.21202 0.94399 0.99994 0.98506 1.21157 0.98566 0.96574 0.97462 1.21086 0.98385 0.94492 1.00536 1.21020 0.93984 0.99226 0.98446 0.90590 0.97222 0.94387 0.93032 0.90664 0.92100 0.97804 0.88109 0.93608 0.89581 0.89065 0.88143 0.88385 0.76995 0.76804 0.90147 0.88981 0.85222 0.86131 0.86368 0.86311 0.86391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.19 8.69 37.15 0.32 -2.86 16 2 C 0.21 5.39 1.94 -68.87 -0.13 5.26 16 3 H 0.00 0.10 8.14 -51.93 -0.42 -0.32 16 4 C -0.50 -13.90 7.77 -34.44 -0.27 -14.17 16 5 H 0.06 1.83 6.57 -52.48 -0.34 1.48 16 6 C 0.06 1.65 5.22 -17.82 -0.09 1.56 16 7 N -0.89 -25.63 11.88 55.43 0.66 -24.97 16 8 Si 0.90 21.61 29.54 -169.99 -5.02 16.59 16 9 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 10 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 12 N -0.52 -11.59 4.36 -237.74 -1.04 -12.63 16 13 C 0.04 0.77 8.88 60.06 0.53 1.31 16 14 C 0.04 0.64 3.81 -4.97 -0.02 0.62 16 15 C 0.52 8.53 7.37 -10.98 -0.08 8.45 16 16 O -0.51 -9.85 13.46 5.56 0.07 -9.78 16 17 N -0.62 -7.60 2.46 -175.06 -0.43 -8.03 16 18 C 0.13 1.35 4.50 -4.04 -0.02 1.33 16 19 C -0.16 -1.37 6.02 -27.88 -0.17 -1.54 16 20 C 0.52 5.06 8.10 -10.98 -0.09 4.97 16 21 N -0.86 -5.23 8.87 31.22 0.28 -4.96 16 22 O -0.54 -7.59 16.82 5.56 0.09 -7.49 16 23 C 0.16 1.67 5.53 -5.19 -0.03 1.64 16 24 C -0.11 -1.24 5.46 -104.62 -0.57 -1.81 16 25 C -0.09 -1.19 9.70 -39.58 -0.38 -1.57 16 26 C -0.12 -1.45 10.05 -39.58 -0.40 -1.85 16 27 C -0.12 -1.26 10.05 -39.58 -0.40 -1.66 16 28 C -0.13 -1.30 10.05 -39.58 -0.40 -1.69 16 29 C -0.11 -1.13 9.70 -39.58 -0.38 -1.52 16 30 H 0.08 2.02 6.52 -51.93 -0.34 1.68 16 31 H 0.01 0.20 6.50 -51.93 -0.34 -0.14 16 32 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 34 H 0.07 1.70 6.31 -51.93 -0.33 1.38 16 35 H 0.06 1.22 5.82 -51.93 -0.30 0.91 16 36 H 0.00 0.07 8.14 -51.93 -0.42 -0.35 16 37 H 0.10 1.84 5.21 -51.93 -0.27 1.57 16 38 H 0.05 0.77 7.16 -51.93 -0.37 0.40 16 39 H 0.09 0.86 8.03 -51.93 -0.42 0.44 16 40 H 0.09 1.15 6.40 -51.93 -0.33 0.82 16 41 H 0.10 0.86 7.22 -51.93 -0.37 0.48 16 42 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.40 1.32 8.83 -40.82 -0.36 0.96 16 44 H 0.40 2.19 8.93 -40.82 -0.36 1.83 16 45 H 0.08 0.62 8.02 -51.93 -0.42 0.20 16 46 H 0.09 1.07 7.36 -51.93 -0.38 0.69 16 47 H 0.13 1.85 7.61 -52.49 -0.40 1.45 16 48 H 0.12 1.24 8.06 -52.48 -0.42 0.82 16 49 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 50 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 51 H 0.12 1.00 8.06 -52.48 -0.42 0.58 16 LS Contribution 411.16 15.07 6.20 6.20 Total: -1.00 -34.59 411.16 -9.62 -44.21 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: -7.86 Total: 4.42 kcal Atomic # 6 Polarization: -0.97 SS G_CDS: -2.57 Total: -3.55 kcal Atomic # 7 Polarization: -50.07 SS G_CDS: -0.53 Total: -50.60 kcal Atomic # 8 Polarization: -17.44 SS G_CDS: 0.17 Total: -17.27 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -34.59 -9.62 -44.21 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161946852.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.170 kcal (2) G-P(sol) polarization free energy of solvation -34.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds