Wall clock time and date at job start Wed Apr 1 2020 04:52:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08994 * 109.47547 * 2 1 4 4 C 1.50707 * 109.46899 * 239.99626 * 2 1 3 5 5 H 1.07999 * 119.99984 * 240.00462 * 4 2 1 6 6 C 1.37874 * 119.99729 * 60.00721 * 4 2 1 7 7 N 1.31516 * 120.00066 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 119.99604 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47426 * 59.99736 * 8 6 4 10 10 H 1.48504 * 109.47162 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.47092 * 299.99539 * 8 6 4 12 12 N 1.46499 * 109.47098 * 119.99911 * 2 1 3 13 13 C 1.46507 * 119.99898 * 59.99465 * 12 2 1 14 14 C 1.34774 * 120.00167 * 239.99640 * 12 2 1 15 15 O 1.21358 * 120.00104 * 356.43214 * 14 12 2 16 16 C 1.49353 * 120.00050 * 176.42744 * 14 12 2 17 17 O 1.21375 * 120.00210 * 5.92724 * 16 14 12 18 18 N 1.34780 * 120.00080 * 185.92538 * 16 14 12 19 19 C 1.39726 * 119.99913 * 175.31975 * 18 16 14 20 20 C 1.38931 * 120.07324 * 214.82223 * 19 18 16 21 21 C 1.38089 * 119.92483 * 179.76654 * 20 19 18 22 22 C 1.38294 * 120.07753 * 0.52840 * 21 20 19 23 23 C 1.50696 * 119.93061 * 179.72108 * 22 21 20 24 24 C 1.53001 * 109.47065 * 269.98404 * 23 22 21 25 25 N 1.46905 * 109.46909 * 179.97438 * 24 23 22 26 26 C 1.46898 * 111.00253 * 66.04355 * 25 24 23 27 27 C 1.46901 * 110.99688 * 190.00062 * 25 24 23 28 28 C 1.38299 * 120.14697 * 359.70479 * 22 21 20 29 29 C 1.38090 * 120.07776 * 0.03739 * 28 22 21 30 30 H 1.09003 * 109.47010 * 59.99854 * 1 2 3 31 31 H 1.08994 * 109.47547 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47094 * 300.00337 * 1 2 3 33 33 H 0.97000 * 119.99765 * 180.02562 * 7 6 4 34 34 H 1.08999 * 109.46597 * 95.98294 * 13 12 2 35 35 H 1.08998 * 109.47086 * 215.98192 * 13 12 2 36 36 H 1.09003 * 109.47209 * 335.98509 * 13 12 2 37 37 H 0.96999 * 119.99541 * 355.31481 * 18 16 14 38 38 H 1.08001 * 120.03524 * 0.02562 * 20 19 18 39 39 H 1.08007 * 119.96631 * 180.25306 * 21 20 19 40 40 H 1.09004 * 109.46452 * 29.98011 * 23 22 21 41 41 H 1.08996 * 109.47213 * 149.97723 * 23 22 21 42 42 H 1.08999 * 109.46695 * 299.99135 * 24 23 22 43 43 H 1.08996 * 109.47661 * 59.99593 * 24 23 22 44 44 H 1.09000 * 109.47229 * 59.99547 * 26 25 24 45 45 H 1.08995 * 109.46875 * 179.97438 * 26 25 24 46 46 H 1.09004 * 109.46843 * 299.99790 * 26 25 24 47 47 H 1.08997 * 109.47779 * 59.99947 * 27 25 24 48 48 H 1.09000 * 109.47024 * 180.02562 * 27 25 24 49 49 H 1.09000 * 109.46950 * 299.99641 * 27 25 24 50 50 H 1.08002 * 119.96031 * 180.02562 * 28 22 21 51 51 H 1.08004 * 120.03860 * 179.97438 * 29 28 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6531 -1.5887 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9429 0.8297 -2.6034 8 14 2.3213 -1.1205 -4.0078 9 1 1.8256 -2.5204 -4.0076 10 1 1.8260 -0.4208 -5.2204 11 1 3.8062 -1.1212 -4.0081 12 7 2.0183 -0.6906 1.1962 13 6 1.6642 -2.0932 1.4281 14 6 2.7932 -0.0356 2.0833 15 8 3.1400 1.1056 1.8597 16 6 3.2251 -0.7144 3.3417 17 8 2.9698 -1.8880 3.5166 18 7 3.8983 -0.0236 4.2830 19 6 4.2167 -0.6304 5.5007 20 6 4.2203 0.1178 6.6714 21 6 4.5308 -0.4860 7.8739 22 6 4.8486 -1.8314 7.9122 23 6 5.1930 -2.4856 9.2253 24 6 6.7006 -2.3845 9.4655 25 7 7.0362 -3.0217 10.7459 26 6 6.7865 -4.4684 10.6955 27 6 8.4273 -2.7404 11.1252 28 6 4.8507 -2.5780 6.7480 29 6 4.5360 -1.9818 5.5429 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 0.7083 1.1609 -3.4844 34 1 2.4671 -2.7352 1.0657 35 1 1.5196 -2.2597 2.4955 36 1 0.7427 -2.3282 0.8955 37 1 4.1618 0.8947 4.1151 38 1 3.9765 1.1695 6.6416 39 1 4.5298 0.0940 8.7849 40 1 4.6618 -1.9813 10.0327 41 1 4.8990 -3.5348 9.1967 42 1 7.2317 -2.8888 8.6582 43 1 6.9946 -1.3354 9.4941 44 1 7.3979 -4.9156 9.9117 45 1 7.0437 -4.9151 11.6559 46 1 5.7329 -4.6480 10.4814 47 1 8.5666 -1.6639 11.2235 48 1 8.6495 -3.2242 12.0764 49 1 9.0982 -3.1250 10.3570 50 1 5.0989 -3.6286 6.7815 51 1 4.5383 -2.5653 4.6341 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000275982968.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:03 Heat of formation + Delta-G solvation = -22.315450 kcal Electronic energy + Delta-G solvation = -29827.058627 eV Core-core repulsion = 25727.244176 eV Total energy + Delta-G solvation = -4099.814451 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.90258 -39.47895 -38.25179 -37.60662 -35.94559 -34.91868 -32.82111 -32.31243 -31.07923 -29.56928 -28.53942 -27.98196 -26.33316 -25.42219 -25.18906 -23.90717 -23.11773 -21.95097 -21.07782 -20.50274 -19.30822 -17.78387 -17.19002 -16.50599 -16.38027 -15.99100 -15.94896 -15.65120 -15.40355 -15.23976 -14.88818 -14.74686 -14.40766 -13.88865 -13.78452 -13.68786 -13.27475 -13.16746 -13.07009 -12.75569 -12.64551 -12.44973 -12.30621 -12.21324 -12.02061 -11.92097 -11.61298 -11.40864 -11.36072 -11.11848 -11.02697 -10.86651 -10.81559 -10.70544 -10.33341 -10.23900 -10.17603 -9.27017 -9.08911 -8.80214 -8.78138 -8.48857 -8.17005 -7.76185 -6.13388 -4.21760 1.01540 1.29148 1.89057 2.67199 3.26272 3.30897 3.33400 3.44911 3.59658 3.76320 3.99946 4.35550 4.54872 4.64780 4.71996 4.75721 4.81261 4.89172 4.92293 4.98066 5.14330 5.18260 5.20932 5.24760 5.26846 5.36776 5.45161 5.45486 5.50533 5.68700 5.76947 5.89205 5.99452 6.14342 6.18635 6.23543 6.35795 6.46594 6.54981 6.58620 6.60139 6.68108 6.71533 6.90492 6.93282 7.09419 7.26169 7.35044 7.62987 7.83076 7.97260 8.06649 8.31804 8.56766 8.83061 9.44422 10.92010 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.025699 B = 0.001763 C = 0.001724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.265500 B =15875.020985 C =16236.488410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.254 3.746 3 H 0.067 0.933 4 C -0.528 4.528 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.887 5.887 8 Si 0.902 3.098 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.550 5.550 13 C 0.072 3.928 14 C 0.493 3.507 15 O -0.536 6.536 16 C 0.509 3.491 17 O -0.500 6.500 18 N -0.653 5.653 19 C 0.146 3.854 20 C -0.141 4.141 21 C -0.096 4.096 22 C -0.102 4.102 23 C -0.073 4.073 24 C 0.059 3.941 25 N -0.549 5.549 26 C 0.019 3.981 27 C 0.024 3.976 28 C -0.098 4.098 29 C -0.118 4.118 30 H 0.097 0.903 31 H 0.034 0.966 32 H 0.013 0.987 33 H 0.265 0.735 34 H 0.052 0.948 35 H 0.088 0.912 36 H 0.070 0.930 37 H 0.422 0.578 38 H 0.127 0.873 39 H 0.126 0.874 40 H 0.080 0.920 41 H 0.071 0.929 42 H 0.036 0.964 43 H 0.076 0.924 44 H 0.026 0.974 45 H 0.067 0.933 46 H 0.072 0.928 47 H 0.068 0.932 48 H 0.068 0.932 49 H 0.025 0.975 50 H 0.122 0.878 51 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.469 -6.497 25.095 27.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.155 3.845 3 H 0.085 0.915 4 C -0.566 4.566 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.525 5.525 8 Si 0.729 3.271 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.280 5.280 13 C -0.071 4.071 14 C 0.273 3.727 15 O -0.415 6.415 16 C 0.293 3.707 17 O -0.374 6.374 18 N -0.299 5.299 19 C 0.052 3.948 20 C -0.161 4.161 21 C -0.115 4.115 22 C -0.104 4.104 23 C -0.111 4.111 24 C -0.069 4.069 25 N -0.273 5.273 26 C -0.129 4.129 27 C -0.125 4.125 28 C -0.116 4.116 29 C -0.138 4.138 30 H 0.116 0.884 31 H 0.053 0.947 32 H 0.032 0.968 33 H 0.075 0.925 34 H 0.070 0.930 35 H 0.106 0.894 36 H 0.089 0.911 37 H 0.260 0.740 38 H 0.145 0.855 39 H 0.144 0.856 40 H 0.098 0.902 41 H 0.090 0.910 42 H 0.055 0.945 43 H 0.095 0.905 44 H 0.044 0.956 45 H 0.085 0.915 46 H 0.091 0.909 47 H 0.087 0.913 48 H 0.086 0.914 49 H 0.044 0.956 50 H 0.140 0.860 51 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 9.006 -6.412 25.198 27.516 hybrid contribution 0.950 -0.425 -1.677 1.974 sum 9.956 -6.837 23.520 26.440 Atomic orbital electron populations 1.22116 0.97552 0.99833 1.01122 1.19184 0.91293 0.94602 0.79463 0.91536 1.21231 1.32245 1.13164 0.89988 0.92101 1.24883 0.94843 0.94962 0.98991 1.69861 1.36093 1.22518 1.24047 0.86496 0.79248 0.79598 0.81715 1.20147 1.21105 1.20197 1.48272 1.45407 1.12560 1.21798 1.22154 1.01021 0.81247 1.02695 1.19584 0.82035 0.86786 0.84292 1.90724 1.56027 1.17736 1.77036 1.20976 0.77756 0.86904 0.85078 1.90638 1.52732 1.15521 1.78490 1.43286 1.54877 1.18026 1.13752 1.17817 0.98874 0.93207 0.84943 1.20943 1.03699 1.00402 0.91075 1.20790 0.99361 0.94146 0.97166 1.19781 1.01581 0.94056 0.94956 1.20532 0.95411 1.00910 0.94202 1.22159 0.95712 0.99756 0.89231 1.62001 1.22811 1.11375 1.31121 1.22461 1.01893 0.87518 1.01037 1.22381 0.87782 1.02022 1.00269 1.20915 0.99483 0.99664 0.91567 1.21333 0.99060 0.93990 0.99424 0.88421 0.94714 0.96776 0.92502 0.92957 0.89420 0.91113 0.73982 0.85460 0.85649 0.90187 0.91029 0.94532 0.90541 0.95576 0.91465 0.90923 0.91276 0.91361 0.95644 0.85967 0.84142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.48 8.96 37.16 0.33 -3.15 16 2 C 0.25 6.42 2.63 -69.08 -0.18 6.23 16 3 H 0.07 1.90 6.90 -51.93 -0.36 1.54 16 4 C -0.53 -14.19 8.37 -34.44 -0.29 -14.47 16 5 H 0.06 1.63 7.65 -52.49 -0.40 1.23 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 7 N -0.89 -24.63 11.32 55.43 0.63 -24.00 16 8 Si 0.90 20.92 29.54 -169.99 -5.02 15.90 16 9 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 10 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 12 N -0.55 -12.03 2.75 -175.80 -0.48 -12.51 16 13 C 0.07 1.35 8.75 59.85 0.52 1.87 16 14 C 0.49 10.21 7.73 -11.63 -0.09 10.12 16 15 O -0.54 -12.26 15.82 5.49 0.09 -12.18 16 16 C 0.51 8.74 7.61 -11.63 -0.09 8.65 16 17 O -0.50 -8.77 10.57 5.47 0.06 -8.71 16 18 N -0.65 -9.21 5.32 -10.30 -0.05 -9.27 16 19 C 0.15 1.87 6.30 -83.75 -0.53 1.34 16 20 C -0.14 -1.48 9.97 -39.38 -0.39 -1.87 16 21 C -0.10 -0.88 9.69 -39.62 -0.38 -1.27 16 22 C -0.10 -0.95 5.14 -104.58 -0.54 -1.49 16 23 C -0.07 -0.54 5.26 -27.88 -0.15 -0.69 16 24 C 0.06 0.43 4.94 -3.82 -0.02 0.41 16 25 N -0.55 -3.95 5.02 -251.26 -1.26 -5.21 16 26 C 0.02 0.12 9.32 60.06 0.56 0.68 16 27 C 0.02 0.14 9.57 60.07 0.57 0.71 16 28 C -0.10 -1.03 9.69 -39.61 -0.38 -1.41 16 29 C -0.12 -1.51 8.70 -39.38 -0.34 -1.86 16 30 H 0.10 2.51 6.07 -51.93 -0.32 2.19 16 31 H 0.03 0.76 6.67 -51.93 -0.35 0.41 16 32 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 34 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.09 1.54 5.36 -51.94 -0.28 1.26 16 36 H 0.07 1.31 6.44 -51.93 -0.33 0.97 16 37 H 0.42 5.38 8.30 -40.82 -0.34 5.04 16 38 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 39 H 0.13 0.89 8.06 -52.48 -0.42 0.46 16 40 H 0.08 0.59 8.08 -51.93 -0.42 0.17 16 41 H 0.07 0.51 6.50 -51.93 -0.34 0.17 16 42 H 0.04 0.29 8.12 -51.93 -0.42 -0.13 16 43 H 0.08 0.56 8.06 -51.93 -0.42 0.14 16 44 H 0.03 0.16 8.14 -51.93 -0.42 -0.26 16 45 H 0.07 0.35 8.12 -51.93 -0.42 -0.07 16 46 H 0.07 0.42 6.47 -51.93 -0.34 0.08 16 47 H 0.07 0.38 8.12 -51.93 -0.42 -0.04 16 48 H 0.07 0.34 8.12 -51.93 -0.42 -0.08 16 49 H 0.02 0.15 8.14 -51.93 -0.42 -0.27 16 50 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 51 H 0.14 2.00 6.22 -52.48 -0.33 1.67 16 LS Contribution 409.85 15.07 6.18 6.18 Total: -1.00 -30.10 409.85 -9.35 -39.45 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: -7.99 Total: 4.85 kcal Atomic # 6 Polarization: 6.98 SS G_CDS: -1.48 Total: 5.50 kcal Atomic # 7 Polarization: -49.81 SS G_CDS: -1.17 Total: -50.98 kcal Atomic # 8 Polarization: -21.03 SS G_CDS: 0.14 Total: -20.89 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -30.10 -9.35 -39.45 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275982968.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.135 kcal (2) G-P(sol) polarization free energy of solvation -30.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds