Wall clock time and date at job start Wed Apr 1 2020 04:52:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.46991 * 2 1 4 4 C 1.50694 * 109.47444 * 240.00149 * 2 1 3 5 5 H 1.08004 * 119.99800 * 240.00319 * 4 2 1 6 6 C 1.37878 * 120.00205 * 59.99821 * 4 2 1 7 7 N 1.31508 * 119.99897 * 0.02562 * 6 4 2 8 8 Si 1.86808 * 119.99846 * 180.02562 * 6 4 2 9 9 H 1.48493 * 109.46785 * 179.97438 * 8 6 4 10 10 H 1.48502 * 109.46870 * 300.00203 * 8 6 4 11 11 H 1.48494 * 109.46960 * 60.00231 * 8 6 4 12 12 N 1.46498 * 109.46994 * 119.99746 * 2 1 3 13 13 C 1.46504 * 119.99733 * 60.00066 * 12 2 1 14 14 C 1.34777 * 120.00058 * 240.00336 * 12 2 1 15 15 O 1.21358 * 120.00414 * 356.44597 * 14 12 2 16 16 C 1.49357 * 119.99943 * 176.44507 * 14 12 2 17 17 O 1.21378 * 119.99986 * 5.93107 * 16 14 12 18 18 N 1.34774 * 120.00095 * 185.93633 * 16 14 12 19 19 C 1.39717 * 120.00172 * 174.44849 * 18 16 14 20 20 C 1.38957 * 120.07363 * 335.31082 * 19 18 16 21 21 C 1.38075 * 119.92244 * 179.97438 * 20 19 18 22 22 C 1.38318 * 120.07599 * 0.02562 * 21 20 19 23 23 C 1.38269 * 120.15203 * 359.97438 * 22 21 20 24 24 C 1.38112 * 120.07869 * 359.74442 * 23 22 21 25 25 C 1.50703 * 120.04315 * 180.27184 * 24 23 22 26 26 C 1.52995 * 109.47301 * 265.26014 * 25 24 23 27 27 N 1.46905 * 109.47221 * 179.97438 * 26 25 24 28 28 C 1.46904 * 110.99397 * 66.04684 * 27 26 25 29 29 C 1.46893 * 111.00093 * 189.99912 * 27 26 25 30 30 H 1.09001 * 109.46582 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47433 * 300.00404 * 1 2 3 32 32 H 1.08999 * 109.46604 * 60.00457 * 1 2 3 33 33 H 0.96996 * 119.99702 * 179.97438 * 7 6 4 34 34 H 1.09001 * 109.46996 * 95.97029 * 13 12 2 35 35 H 1.09000 * 109.46983 * 215.96372 * 13 12 2 36 36 H 1.08997 * 109.47258 * 335.96860 * 13 12 2 37 37 H 0.97001 * 119.99951 * 354.43948 * 18 16 14 38 38 H 1.07998 * 120.03976 * 359.95483 * 20 19 18 39 39 H 1.07996 * 119.96519 * 180.02562 * 21 20 19 40 40 H 1.08004 * 119.92193 * 179.97438 * 22 21 20 41 41 H 1.08010 * 119.95998 * 180.02562 * 23 22 21 42 42 H 1.09005 * 109.46894 * 25.26316 * 25 24 23 43 43 H 1.09004 * 109.47235 * 145.25361 * 25 24 23 44 44 H 1.08995 * 109.47168 * 299.99537 * 26 25 24 45 45 H 1.08999 * 109.47182 * 60.00160 * 26 25 24 46 46 H 1.08993 * 109.47881 * 60.00338 * 28 27 26 47 47 H 1.09004 * 109.47009 * 180.02562 * 28 27 26 48 48 H 1.09002 * 109.47141 * 299.99432 * 28 27 26 49 49 H 1.08998 * 109.47260 * 60.00070 * 29 27 26 50 50 H 1.09000 * 109.46720 * 180.02562 * 29 27 26 51 51 H 1.09001 * 109.47238 * 299.99588 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6994 -0.2393 -2.4827 7 7 0.9437 0.8302 -2.6034 8 14 2.3216 -1.1204 -4.0079 9 1 1.8263 -0.4207 -5.2204 10 1 3.8067 -1.1209 -4.0080 11 1 1.8261 -2.5202 -4.0077 12 7 2.0183 -0.6906 1.1962 13 6 1.6644 -2.0932 1.4280 14 6 2.7931 -0.0355 2.0834 15 8 3.1396 1.1059 1.8600 16 6 3.2253 -0.7144 3.3416 17 8 2.9705 -1.8882 3.5163 18 7 3.8982 -0.0236 4.2831 19 6 4.2010 -0.6244 5.5076 20 6 3.4239 -1.6758 5.9784 21 6 3.7262 -2.2676 7.1887 22 6 4.8009 -1.8148 7.9325 23 6 5.5762 -0.7688 7.4670 24 6 5.2830 -0.1760 6.2546 25 6 6.1322 0.9600 5.7451 26 6 5.4937 2.2922 6.1425 27 7 6.3219 3.3995 5.6465 28 6 6.3249 3.4377 4.1779 29 6 5.8753 4.6824 6.2055 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3632 0.5138 -0.8900 33 1 0.7097 1.1617 -3.4844 34 1 2.4672 -2.7352 1.0655 35 1 1.5199 -2.2598 2.4955 36 1 0.7428 -2.3281 0.8956 37 1 4.1724 0.8907 4.1106 38 1 2.5843 -2.0294 5.3985 39 1 3.1230 -3.0851 7.5550 40 1 5.0349 -2.2793 8.8791 41 1 6.4148 -0.4179 8.0502 42 1 7.1296 0.8911 6.1796 43 1 6.2043 0.9011 4.6591 44 1 4.4964 2.3611 5.7081 45 1 5.4218 2.3511 7.2286 46 1 5.3059 3.5740 3.8158 47 1 6.9458 4.2663 3.8372 48 1 6.7258 2.5008 3.7910 49 1 5.9491 4.6505 7.2925 50 1 6.5051 5.4849 5.8215 51 1 4.8400 4.8639 5.9168 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000276025002.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:08 Heat of formation + Delta-G solvation = -36.853251 kcal Electronic energy + Delta-G solvation = -31306.417794 eV Core-core repulsion = 27205.972937 eV Total energy + Delta-G solvation = -4100.444857 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.36566 -40.73072 -39.38475 -38.39196 -37.60837 -36.03110 -34.75671 -33.97442 -31.54669 -30.91905 -29.69310 -28.51596 -27.92553 -27.36712 -26.32452 -25.53886 -23.94604 -22.70882 -22.10247 -21.70555 -20.75603 -19.08666 -18.65025 -18.30101 -17.74612 -17.36358 -16.98114 -16.89794 -16.54333 -16.26646 -16.04362 -15.70046 -15.65991 -15.27826 -14.96624 -14.74686 -14.52603 -14.26538 -14.11554 -14.02416 -13.93199 -13.57601 -13.43664 -13.29702 -13.02442 -12.83924 -12.79339 -12.74679 -12.66227 -12.61151 -12.41256 -12.29418 -12.22202 -12.12375 -11.99777 -11.77903 -11.51512 -11.27172 -10.59352 -10.34445 -9.71342 -9.59552 -9.40027 -9.09899 -8.20002 -6.36693 -0.08937 0.43320 0.67181 1.24083 1.41377 1.42676 1.50749 2.04132 2.36231 2.53823 2.80282 2.99218 3.08366 3.19156 3.80306 3.87784 4.09079 4.11544 4.21259 4.32945 4.35025 4.41984 4.45498 4.49600 4.51100 4.57237 4.65861 4.68513 4.70956 4.72317 4.82530 4.90378 4.95222 4.97030 4.99436 5.00796 5.08060 5.18731 5.24108 5.33177 5.36400 5.38450 5.56257 5.57955 5.63455 5.85289 5.95916 5.99469 6.02252 6.05897 6.07308 6.41271 6.58884 6.69306 6.91667 7.34080 8.84448 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011368 B = 0.002944 C = 0.002507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2462.478671 B = 9508.630121 C =11165.260826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.259 3.741 3 H 0.023 0.977 4 C -0.546 4.546 5 H 0.057 0.943 6 C 0.022 3.978 7 N -0.913 5.913 8 Si 0.964 3.036 9 H -0.280 1.280 10 H -0.277 1.277 11 H -0.265 1.265 12 N -0.559 5.559 13 C 0.077 3.923 14 C 0.485 3.515 15 O -0.565 6.565 16 C 0.515 3.485 17 O -0.499 6.499 18 N -0.635 5.635 19 C 0.125 3.875 20 C -0.149 4.149 21 C -0.105 4.105 22 C -0.129 4.129 23 C -0.091 4.091 24 C -0.111 4.111 25 C -0.074 4.074 26 C 0.061 3.939 27 N -0.550 5.550 28 C 0.015 3.985 29 C 0.021 3.979 30 H 0.048 0.952 31 H 0.025 0.975 32 H 0.075 0.925 33 H 0.267 0.733 34 H 0.052 0.948 35 H 0.104 0.896 36 H 0.074 0.926 37 H 0.420 0.580 38 H 0.128 0.872 39 H 0.144 0.856 40 H 0.154 0.846 41 H 0.155 0.845 42 H 0.101 0.899 43 H 0.057 0.943 44 H 0.018 0.982 45 H 0.092 0.908 46 H 0.016 0.984 47 H 0.079 0.921 48 H 0.068 0.932 49 H 0.082 0.918 50 H 0.076 0.924 51 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.479 -1.107 22.859 24.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.158 3.842 3 H 0.041 0.959 4 C -0.584 4.584 5 H 0.076 0.924 6 C -0.179 4.179 7 N -0.551 5.551 8 Si 0.789 3.211 9 H -0.205 1.205 10 H -0.203 1.203 11 H -0.190 1.190 12 N -0.289 5.289 13 C -0.065 4.065 14 C 0.267 3.733 15 O -0.446 6.446 16 C 0.298 3.702 17 O -0.374 6.374 18 N -0.281 5.281 19 C 0.031 3.969 20 C -0.169 4.169 21 C -0.124 4.124 22 C -0.147 4.147 23 C -0.110 4.110 24 C -0.114 4.114 25 C -0.112 4.112 26 C -0.067 4.067 27 N -0.273 5.273 28 C -0.133 4.133 29 C -0.127 4.127 30 H 0.067 0.933 31 H 0.044 0.956 32 H 0.094 0.906 33 H 0.077 0.923 34 H 0.071 0.929 35 H 0.122 0.878 36 H 0.093 0.907 37 H 0.259 0.741 38 H 0.146 0.854 39 H 0.162 0.838 40 H 0.172 0.828 41 H 0.173 0.827 42 H 0.120 0.880 43 H 0.076 0.924 44 H 0.036 0.964 45 H 0.111 0.889 46 H 0.035 0.965 47 H 0.098 0.902 48 H 0.087 0.913 49 H 0.101 0.899 50 H 0.095 0.905 51 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 8.796 -1.292 22.783 24.456 hybrid contribution -0.748 0.442 -1.867 2.059 sum 8.048 -0.849 20.916 22.427 Atomic orbital electron populations 1.21923 0.96356 1.00509 1.00569 1.18824 0.92145 0.92595 0.80597 0.95879 1.21467 1.32580 1.13307 0.91040 0.92431 1.25665 0.94862 0.95568 1.01776 1.69979 1.36814 1.23534 1.24774 0.85517 0.78465 0.78963 0.78157 1.20506 1.20253 1.18956 1.48246 1.45799 1.13652 1.21197 1.22251 1.01087 0.79384 1.03775 1.20207 0.81254 0.86566 0.85286 1.90690 1.56902 1.19092 1.77881 1.20175 0.79129 0.86544 0.84356 1.90606 1.52932 1.15227 1.78639 1.43197 1.53906 1.17772 1.13185 1.17940 0.96417 0.97210 0.85343 1.21445 1.00452 0.97253 0.97719 1.21328 0.98077 0.99787 0.93185 1.21520 0.95180 0.97036 1.00994 1.21204 1.00235 0.95557 0.93971 1.19715 0.94669 1.00157 0.96865 1.20523 0.99415 0.90605 1.00656 1.22146 0.93306 0.89986 1.01276 1.62076 1.53062 1.04365 1.07819 1.22503 0.99998 1.03313 0.87528 1.22460 0.98357 0.90647 1.01203 0.93295 0.95608 0.90606 0.92343 0.92943 0.87777 0.90736 0.74120 0.85388 0.83798 0.82810 0.82699 0.88023 0.92417 0.96355 0.88919 0.96538 0.90243 0.91308 0.89946 0.90475 0.96205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.45 8.96 71.98 0.64 -5.81 16 2 C 0.26 13.47 2.62 44.25 0.12 13.59 16 3 H 0.02 1.40 6.90 -2.39 -0.02 1.38 16 4 C -0.55 -29.86 8.37 25.60 0.21 -29.64 16 5 H 0.06 3.12 7.65 -2.91 -0.02 3.10 16 6 C 0.02 1.18 5.30 84.66 0.45 1.63 16 7 N -0.91 -51.57 11.32 21.45 0.24 -51.33 16 8 Si 0.96 42.93 29.54 68.60 2.03 44.96 16 9 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 10 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 11 H -0.26 -11.27 7.11 99.48 0.71 -10.57 16 12 N -0.56 -24.95 2.75 -828.49 -2.28 -27.23 16 13 C 0.08 2.86 8.75 127.77 1.12 3.98 16 14 C 0.48 20.81 7.73 87.24 0.67 21.49 16 15 O -0.56 -27.03 15.82 -3.27 -0.05 -27.08 16 16 C 0.52 18.19 7.58 87.24 0.66 18.85 16 17 O -0.50 -17.51 10.29 -3.33 -0.03 -17.54 16 18 N -0.64 -18.90 4.98 -304.83 -1.52 -20.42 16 19 C 0.12 3.22 6.41 38.22 0.25 3.47 16 20 C -0.15 -3.76 8.72 22.40 0.20 -3.56 16 21 C -0.11 -1.97 10.04 22.25 0.22 -1.75 16 22 C -0.13 -1.90 10.04 22.30 0.22 -1.68 16 23 C -0.09 -1.41 9.68 22.25 0.22 -1.19 16 24 C -0.11 -2.26 5.15 -19.73 -0.10 -2.36 16 25 C -0.07 -1.38 4.64 29.85 0.14 -1.24 16 26 C 0.06 1.12 4.85 86.30 0.42 1.54 16 27 N -0.55 -10.42 5.02 -948.86 -4.76 -15.18 16 28 C 0.01 0.31 9.32 127.69 1.19 1.50 16 29 C 0.02 0.34 9.57 127.69 1.22 1.56 16 30 H 0.05 2.14 6.67 -2.39 -0.02 2.13 16 31 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.08 3.97 6.07 -2.39 -0.01 3.96 16 33 H 0.27 14.30 8.31 -92.71 -0.77 13.53 16 34 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.10 3.53 5.36 -2.47 -0.01 3.52 16 36 H 0.07 2.70 6.44 -2.39 -0.02 2.68 16 37 H 0.42 12.19 6.23 -92.71 -0.58 11.61 16 38 H 0.13 3.66 5.78 -2.91 -0.02 3.64 16 39 H 0.14 2.04 8.06 -2.91 -0.02 2.02 16 40 H 0.15 1.30 8.06 -2.91 -0.02 1.28 16 41 H 0.16 1.49 8.06 -2.91 -0.02 1.47 16 42 H 0.10 1.59 8.05 -2.38 -0.02 1.57 16 43 H 0.06 1.26 5.67 -2.38 -0.01 1.25 16 44 H 0.02 0.40 7.42 -2.39 -0.02 0.38 16 45 H 0.09 1.44 8.06 -2.39 -0.02 1.42 16 46 H 0.02 0.39 8.14 -2.39 -0.02 0.37 16 47 H 0.08 1.48 8.12 -2.38 -0.02 1.46 16 48 H 0.07 1.48 6.47 -2.39 -0.02 1.46 16 49 H 0.08 1.05 8.12 -2.39 -0.02 1.03 16 50 H 0.08 1.09 8.12 -2.39 -0.02 1.07 16 51 H 0.02 0.34 8.14 -2.39 -0.02 0.32 16 Total: -1.00 -65.21 404.98 1.84 -63.37 By element: Atomic # 1 Polarization: 29.71 SS G_CDS: 0.37 Total: 30.08 kcal Atomic # 6 Polarization: 12.52 SS G_CDS: 7.85 Total: 20.37 kcal Atomic # 7 Polarization: -105.84 SS G_CDS: -8.32 Total: -114.16 kcal Atomic # 8 Polarization: -44.53 SS G_CDS: -0.09 Total: -44.62 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.96 kcal Total: -65.21 1.84 -63.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276025002.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.516 kcal (2) G-P(sol) polarization free energy of solvation -65.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds