Wall clock time and date at job start Wed Apr 1 2020 04:52:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09005 * 109.46808 * 2 1 4 4 C 1.50696 * 109.47094 * 119.99367 * 2 1 3 5 5 H 1.07999 * 119.99990 * 118.56937 * 4 2 1 6 6 C 1.37877 * 120.00462 * 298.57422 * 4 2 1 7 7 N 1.31512 * 120.00432 * 153.86686 * 6 4 2 8 8 Si 1.86801 * 119.99824 * 334.14247 * 6 4 2 9 9 H 1.48494 * 109.47345 * 179.72636 * 8 6 4 10 10 H 1.48500 * 109.47263 * 299.72626 * 8 6 4 11 11 H 1.48501 * 109.47044 * 59.72392 * 8 6 4 12 12 N 1.46493 * 109.47486 * 240.00058 * 2 1 3 13 13 C 1.46505 * 119.99878 * 299.99995 * 12 2 1 14 14 C 1.34776 * 120.00064 * 119.99985 * 12 2 1 15 15 O 1.21354 * 120.00401 * 5.32988 * 14 12 2 16 16 C 1.49364 * 119.99684 * 185.33077 * 14 12 2 17 17 O 1.21378 * 120.00148 * 4.64956 * 16 14 12 18 18 N 1.34778 * 119.99827 * 184.64615 * 16 14 12 19 19 C 1.39724 * 119.99934 * 184.48468 * 18 16 14 20 20 C 1.38948 * 120.07471 * 332.87042 * 19 18 16 21 21 C 1.38083 * 119.92122 * 179.97438 * 20 19 18 22 22 C 1.38309 * 120.07210 * 0.02861 * 21 20 19 23 23 C 1.38274 * 120.15808 * 359.97438 * 22 21 20 24 24 C 1.38115 * 120.07193 * 359.68653 * 23 22 21 25 25 C 1.50705 * 120.03756 * 180.31768 * 24 23 22 26 26 C 1.52996 * 109.47447 * 265.29600 * 25 24 23 27 27 N 1.46896 * 109.47214 * 179.97438 * 26 25 24 28 28 C 1.46897 * 110.99628 * 66.04797 * 27 26 25 29 29 C 1.46904 * 110.99984 * 189.99630 * 27 26 25 30 30 H 1.08992 * 109.47278 * 294.06890 * 1 2 3 31 31 H 1.09004 * 109.46710 * 54.06351 * 1 2 3 32 32 H 1.08997 * 109.46653 * 174.06431 * 1 2 3 33 33 H 0.97007 * 119.99726 * 355.25569 * 7 6 4 34 34 H 1.08994 * 109.47094 * 95.25417 * 13 12 2 35 35 H 1.08998 * 109.46738 * 215.25654 * 13 12 2 36 36 H 1.08994 * 109.46669 * 335.25632 * 13 12 2 37 37 H 0.97002 * 119.99884 * 4.49481 * 18 16 14 38 38 H 1.08001 * 120.03753 * 359.97438 * 20 19 18 39 39 H 1.07996 * 119.95741 * 179.97438 * 21 20 19 40 40 H 1.08010 * 119.91972 * 179.97438 * 22 21 20 41 41 H 1.08001 * 119.96136 * 180.02562 * 23 22 21 42 42 H 1.08996 * 109.47161 * 25.29895 * 25 24 23 43 43 H 1.09006 * 109.46909 * 145.29423 * 25 24 23 44 44 H 1.08998 * 109.46700 * 300.00484 * 26 25 24 45 45 H 1.09004 * 109.46801 * 59.99677 * 26 25 24 46 46 H 1.09005 * 109.47553 * 60.00354 * 28 27 26 47 47 H 1.09003 * 109.46902 * 179.97438 * 28 27 26 48 48 H 1.08996 * 109.47325 * 299.99712 * 28 27 26 49 49 H 1.09002 * 109.46610 * 60.00180 * 29 27 26 50 50 H 1.08999 * 109.47088 * 180.02562 * 29 27 26 51 51 H 1.08997 * 109.47610 * 300.00792 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6341 -1.6016 1.1317 6 6 1.7238 -0.2222 2.4826 7 7 1.6869 -1.0361 3.5149 8 14 1.3504 1.5937 2.7112 9 1 1.0447 1.8603 4.1397 10 1 2.5293 2.3972 2.2990 11 1 0.1804 1.9675 1.8765 12 7 2.0184 -0.6905 -1.1961 13 6 1.6646 -2.0932 -1.4279 14 6 2.7933 -0.0355 -2.0832 15 8 3.1664 1.0944 -1.8450 16 6 3.1928 -0.7004 -3.3597 17 8 2.7517 -1.7967 -3.6369 18 7 4.0431 -0.0829 -4.2037 19 6 4.3438 -0.6614 -5.4395 20 6 4.2678 -2.0395 -5.6002 21 6 4.5651 -2.6077 -6.8231 22 6 4.9389 -1.8068 -7.8870 23 6 5.0156 -0.4351 -7.7305 24 6 4.7128 0.1405 -6.5120 25 6 4.7897 1.6362 -6.3443 26 6 6.1593 2.0161 -5.7779 27 7 6.2345 3.4741 -5.6151 28 6 5.2910 3.9385 -4.5894 29 6 7.6052 3.8987 -5.3004 30 1 -0.3633 0.4191 0.9382 31 1 -0.3633 0.6032 -0.8321 32 1 -0.3632 -1.0222 -0.1063 33 1 1.8088 -1.9897 3.3853 34 1 0.7907 -2.1448 -2.0772 35 1 2.5012 -2.6051 -1.9033 36 1 1.4386 -2.5730 -0.4757 37 1 4.4464 0.7629 -3.9531 38 1 3.9764 -2.6654 -4.7697 39 1 4.5066 -3.6787 -6.9485 40 1 5.1713 -2.2539 -8.8423 41 1 5.3074 0.1873 -8.5635 42 1 4.6504 2.1180 -7.3121 43 1 4.0089 1.9656 -5.6588 44 1 6.2985 1.5343 -4.8102 45 1 6.9401 1.6867 -6.4635 46 1 5.5301 3.4676 -3.6358 47 1 5.3677 5.0212 -4.4887 48 1 4.2756 3.6715 -4.8821 49 1 8.2721 3.6026 -6.1102 50 1 7.6324 4.9822 -5.1846 51 1 7.9281 3.4262 -4.3728 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000276025005.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:12 Heat of formation + Delta-G solvation = -20.120566 kcal Electronic energy + Delta-G solvation = -31403.976757 eV Core-core repulsion = 27304.257484 eV Total energy + Delta-G solvation = -4099.719273 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.15626 -39.56912 -38.14999 -37.60447 -36.06645 -34.83412 -33.21303 -32.80165 -30.37019 -30.01477 -28.89398 -27.76720 -26.46223 -25.30388 -24.85713 -24.52266 -22.81131 -21.80665 -20.89944 -20.64472 -19.22175 -17.86827 -17.58026 -17.16517 -16.51349 -16.21634 -15.93035 -15.66576 -15.47186 -15.15548 -14.90990 -14.72294 -14.13446 -14.03833 -13.76952 -13.49661 -13.35039 -13.21119 -13.05549 -12.75873 -12.60900 -12.54530 -12.21227 -12.04086 -11.99982 -11.98962 -11.80133 -11.72258 -11.54358 -11.36954 -11.29001 -11.03958 -10.80377 -10.55605 -10.51948 -10.10858 -9.86822 -9.29124 -9.04589 -8.86482 -8.62727 -8.37964 -8.22745 -7.96528 -6.61861 -4.21759 0.98491 1.24842 1.80476 2.53407 3.33040 3.41898 3.42666 3.56692 3.61116 3.75633 3.84356 4.40199 4.55526 4.58360 4.65433 4.81867 4.88767 4.94170 5.01622 5.05151 5.18254 5.20997 5.28479 5.31971 5.37681 5.43148 5.48731 5.61294 5.66277 5.77903 5.82750 5.87556 5.95925 6.06072 6.10760 6.20995 6.24171 6.31369 6.34762 6.41312 6.45166 6.50455 6.73391 6.74010 6.80892 6.87178 6.92056 7.10333 7.21223 7.65127 7.78207 8.06774 8.23517 8.38158 8.76984 9.42180 10.73863 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011116 B = 0.003172 C = 0.002590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2518.270426 B = 8823.870904 C =10809.278114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.235 3.765 3 H 0.055 0.945 4 C -0.626 4.626 5 H 0.064 0.936 6 C 0.048 3.952 7 N -0.885 5.885 8 Si 1.029 2.971 9 H -0.282 1.282 10 H -0.279 1.279 11 H -0.274 1.274 12 N -0.545 5.545 13 C 0.082 3.918 14 C 0.493 3.507 15 O -0.536 6.536 16 C 0.507 3.493 17 O -0.495 6.495 18 N -0.647 5.647 19 C 0.151 3.849 20 C -0.130 4.130 21 C -0.103 4.103 22 C -0.138 4.138 23 C -0.096 4.096 24 C -0.111 4.111 25 C -0.080 4.080 26 C 0.057 3.943 27 N -0.547 5.547 28 C 0.014 3.986 29 C 0.023 3.977 30 H 0.066 0.934 31 H 0.027 0.973 32 H 0.050 0.950 33 H 0.272 0.728 34 H 0.051 0.949 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.419 0.581 38 H 0.152 0.848 39 H 0.124 0.876 40 H 0.121 0.879 41 H 0.126 0.874 42 H 0.086 0.914 43 H 0.073 0.927 44 H 0.034 0.966 45 H 0.078 0.922 46 H 0.033 0.967 47 H 0.069 0.931 48 H 0.072 0.928 49 H 0.067 0.933 50 H 0.069 0.931 51 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.578 3.046 -22.153 23.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.134 3.866 3 H 0.073 0.927 4 C -0.664 4.664 5 H 0.082 0.918 6 C -0.161 4.161 7 N -0.517 5.517 8 Si 0.856 3.144 9 H -0.208 1.208 10 H -0.205 1.205 11 H -0.200 1.200 12 N -0.275 5.275 13 C -0.061 4.061 14 C 0.274 3.726 15 O -0.415 6.415 16 C 0.291 3.709 17 O -0.369 6.369 18 N -0.293 5.293 19 C 0.056 3.944 20 C -0.150 4.150 21 C -0.122 4.122 22 C -0.157 4.157 23 C -0.114 4.114 24 C -0.114 4.114 25 C -0.118 4.118 26 C -0.071 4.071 27 N -0.271 5.271 28 C -0.134 4.134 29 C -0.125 4.125 30 H 0.085 0.915 31 H 0.046 0.954 32 H 0.069 0.931 33 H 0.082 0.918 34 H 0.070 0.930 35 H 0.095 0.905 36 H 0.098 0.902 37 H 0.257 0.743 38 H 0.169 0.831 39 H 0.142 0.858 40 H 0.139 0.861 41 H 0.144 0.856 42 H 0.105 0.895 43 H 0.092 0.908 44 H 0.052 0.948 45 H 0.097 0.903 46 H 0.052 0.948 47 H 0.088 0.912 48 H 0.091 0.909 49 H 0.086 0.914 50 H 0.088 0.912 51 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 6.905 4.216 -21.369 22.849 hybrid contribution 0.773 -1.294 -0.265 1.531 sum 7.677 2.922 -21.634 23.141 Atomic orbital electron populations 1.22471 0.98005 1.00697 1.00424 1.19359 0.90735 0.94608 0.81872 0.92681 1.22012 1.38891 1.14961 0.90499 0.91762 1.25618 0.93082 1.05476 0.91877 1.70869 1.41881 1.05477 1.33448 0.84294 0.77639 0.76101 0.76415 1.20767 1.20483 1.20004 1.47969 1.45662 1.12532 1.21310 1.21988 1.00958 0.81221 1.01968 1.19644 0.81870 0.86707 0.84399 1.90709 1.55001 1.18688 1.77148 1.20851 0.78651 0.85684 0.85697 1.90643 1.52957 1.18887 1.74444 1.43292 1.44424 1.26042 1.15549 1.17712 0.99793 0.92300 0.84576 1.21646 1.00602 0.93229 0.99549 1.21086 0.98540 0.99960 0.92615 1.21124 1.01756 0.93732 0.99062 1.20820 0.99622 0.94926 0.96079 1.19581 1.04152 0.95020 0.92631 1.20566 0.97249 0.90695 1.03267 1.22163 0.97679 0.87402 0.99829 1.62027 1.06632 1.12119 1.46320 1.22516 0.96947 1.00988 0.92909 1.22386 0.89256 1.01102 0.99766 0.91475 0.95393 0.93086 0.91839 0.93009 0.90491 0.90167 0.74253 0.83054 0.85761 0.86075 0.85647 0.89505 0.90811 0.94812 0.90335 0.94828 0.91205 0.90907 0.91428 0.91239 0.95449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.39 8.97 37.16 0.33 -3.05 16 2 C 0.24 5.60 2.23 -69.09 -0.15 5.44 16 3 H 0.06 1.40 5.70 -51.93 -0.30 1.10 16 4 C -0.63 -16.90 8.21 -34.44 -0.28 -17.19 16 5 H 0.06 1.86 7.62 -52.49 -0.40 1.46 16 6 C 0.05 1.32 5.14 -17.82 -0.09 1.23 16 7 N -0.89 -25.89 13.70 55.43 0.76 -25.14 16 8 Si 1.03 24.40 26.49 -169.99 -4.50 19.89 16 9 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 11 H -0.27 -5.98 6.00 56.52 0.34 -5.64 16 12 N -0.54 -11.54 2.75 -175.81 -0.48 -12.03 16 13 C 0.08 1.51 8.07 59.85 0.48 1.99 16 14 C 0.49 9.88 7.72 -11.63 -0.09 9.79 16 15 O -0.54 -11.64 15.84 5.49 0.09 -11.56 16 16 C 0.51 8.56 7.60 -11.63 -0.09 8.47 16 17 O -0.50 -8.48 10.33 5.47 0.06 -8.43 16 18 N -0.65 -9.19 4.92 -10.29 -0.05 -9.24 16 19 C 0.15 1.96 6.41 -83.75 -0.54 1.42 16 20 C -0.13 -1.69 8.78 -39.38 -0.35 -2.04 16 21 C -0.10 -1.09 10.04 -39.61 -0.40 -1.49 16 22 C -0.14 -1.27 10.04 -39.54 -0.40 -1.67 16 23 C -0.10 -0.89 9.68 -39.61 -0.38 -1.28 16 24 C -0.11 -1.20 5.15 -104.42 -0.54 -1.73 16 25 C -0.08 -0.77 4.64 -27.88 -0.13 -0.90 16 26 C 0.06 0.54 4.85 -3.83 -0.02 0.53 16 27 N -0.55 -5.29 5.02 -251.26 -1.26 -6.55 16 28 C 0.01 0.14 9.32 60.06 0.56 0.70 16 29 C 0.02 0.19 9.57 60.07 0.57 0.77 16 30 H 0.07 1.48 5.11 -51.93 -0.27 1.22 16 31 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.05 1.04 7.48 -51.93 -0.39 0.65 16 33 H 0.27 7.87 8.73 -40.82 -0.36 7.52 16 34 H 0.05 0.88 8.11 -51.93 -0.42 0.46 16 35 H 0.08 1.35 5.91 -51.93 -0.31 1.05 16 36 H 0.08 1.57 7.08 -51.93 -0.37 1.20 16 37 H 0.42 5.64 6.30 -40.82 -0.26 5.39 16 38 H 0.15 2.17 5.62 -52.49 -0.29 1.88 16 39 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 40 H 0.12 0.82 8.06 -52.48 -0.42 0.40 16 41 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 42 H 0.09 0.76 8.05 -51.93 -0.42 0.35 16 43 H 0.07 0.78 5.72 -51.93 -0.30 0.49 16 44 H 0.03 0.36 7.37 -51.93 -0.38 -0.03 16 45 H 0.08 0.69 8.06 -51.93 -0.42 0.27 16 46 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 47 H 0.07 0.63 8.12 -51.93 -0.42 0.21 16 48 H 0.07 0.73 6.47 -51.93 -0.34 0.40 16 49 H 0.07 0.49 8.12 -51.93 -0.42 0.07 16 50 H 0.07 0.52 8.12 -51.93 -0.42 0.10 16 51 H 0.03 0.24 8.14 -51.93 -0.42 -0.19 16 LS Contribution 401.99 15.07 6.06 6.06 Total: -1.00 -30.22 401.99 -8.71 -38.92 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: -7.87 Total: 7.06 kcal Atomic # 6 Polarization: 2.51 SS G_CDS: -1.50 Total: 1.00 kcal Atomic # 7 Polarization: -51.93 SS G_CDS: -1.04 Total: -52.96 kcal Atomic # 8 Polarization: -20.13 SS G_CDS: 0.14 Total: -19.98 kcal Atomic # 14 Polarization: 24.40 SS G_CDS: -4.50 Total: 19.89 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -30.22 -8.71 -38.92 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276025005.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.803 kcal (2) G-P(sol) polarization free energy of solvation -30.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds