Wall clock time and date at job start Wed Apr 1 2020 04:52:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09005 * 109.46808 * 2 1 4 4 C 1.50696 * 109.47094 * 119.99367 * 2 1 3 5 5 H 1.07999 * 119.99990 * 118.56937 * 4 2 1 6 6 C 1.37877 * 120.00462 * 298.57422 * 4 2 1 7 7 N 1.31512 * 120.00432 * 153.86686 * 6 4 2 8 8 Si 1.86801 * 119.99824 * 334.14247 * 6 4 2 9 9 H 1.48494 * 109.47345 * 179.72636 * 8 6 4 10 10 H 1.48500 * 109.47263 * 299.72626 * 8 6 4 11 11 H 1.48501 * 109.47044 * 59.72392 * 8 6 4 12 12 N 1.46493 * 109.47486 * 240.00058 * 2 1 3 13 13 C 1.46505 * 119.99878 * 299.99995 * 12 2 1 14 14 C 1.34776 * 120.00064 * 119.99985 * 12 2 1 15 15 O 1.21354 * 120.00401 * 5.32988 * 14 12 2 16 16 C 1.49364 * 119.99684 * 185.33077 * 14 12 2 17 17 O 1.21378 * 120.00148 * 4.64956 * 16 14 12 18 18 N 1.34778 * 119.99827 * 184.64615 * 16 14 12 19 19 C 1.39724 * 119.99934 * 184.48468 * 18 16 14 20 20 C 1.38948 * 120.07471 * 332.87042 * 19 18 16 21 21 C 1.38083 * 119.92122 * 179.97438 * 20 19 18 22 22 C 1.38309 * 120.07210 * 0.02861 * 21 20 19 23 23 C 1.38274 * 120.15808 * 359.97438 * 22 21 20 24 24 C 1.38115 * 120.07193 * 359.68653 * 23 22 21 25 25 C 1.50705 * 120.03756 * 180.31768 * 24 23 22 26 26 C 1.52996 * 109.47447 * 265.29600 * 25 24 23 27 27 N 1.46896 * 109.47214 * 179.97438 * 26 25 24 28 28 C 1.46897 * 110.99628 * 66.04797 * 27 26 25 29 29 C 1.46904 * 110.99984 * 189.99630 * 27 26 25 30 30 H 1.08992 * 109.47278 * 294.06890 * 1 2 3 31 31 H 1.09004 * 109.46710 * 54.06351 * 1 2 3 32 32 H 1.08997 * 109.46653 * 174.06431 * 1 2 3 33 33 H 0.97007 * 119.99726 * 355.25569 * 7 6 4 34 34 H 1.08994 * 109.47094 * 95.25417 * 13 12 2 35 35 H 1.08998 * 109.46738 * 215.25654 * 13 12 2 36 36 H 1.08994 * 109.46669 * 335.25632 * 13 12 2 37 37 H 0.97002 * 119.99884 * 4.49481 * 18 16 14 38 38 H 1.08001 * 120.03753 * 359.97438 * 20 19 18 39 39 H 1.07996 * 119.95741 * 179.97438 * 21 20 19 40 40 H 1.08010 * 119.91972 * 179.97438 * 22 21 20 41 41 H 1.08001 * 119.96136 * 180.02562 * 23 22 21 42 42 H 1.08996 * 109.47161 * 25.29895 * 25 24 23 43 43 H 1.09006 * 109.46909 * 145.29423 * 25 24 23 44 44 H 1.08998 * 109.46700 * 300.00484 * 26 25 24 45 45 H 1.09004 * 109.46801 * 59.99677 * 26 25 24 46 46 H 1.09005 * 109.47553 * 60.00354 * 28 27 26 47 47 H 1.09003 * 109.46902 * 179.97438 * 28 27 26 48 48 H 1.08996 * 109.47325 * 299.99712 * 28 27 26 49 49 H 1.09002 * 109.46610 * 60.00180 * 29 27 26 50 50 H 1.08999 * 109.47088 * 180.02562 * 29 27 26 51 51 H 1.08997 * 109.47610 * 300.00792 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6341 -1.6016 1.1317 6 6 1.7238 -0.2222 2.4826 7 7 1.6869 -1.0361 3.5149 8 14 1.3504 1.5937 2.7112 9 1 1.0447 1.8603 4.1397 10 1 2.5293 2.3972 2.2990 11 1 0.1804 1.9675 1.8765 12 7 2.0184 -0.6905 -1.1961 13 6 1.6646 -2.0932 -1.4279 14 6 2.7933 -0.0355 -2.0832 15 8 3.1664 1.0944 -1.8450 16 6 3.1928 -0.7004 -3.3597 17 8 2.7517 -1.7967 -3.6369 18 7 4.0431 -0.0829 -4.2037 19 6 4.3438 -0.6614 -5.4395 20 6 4.2678 -2.0395 -5.6002 21 6 4.5651 -2.6077 -6.8231 22 6 4.9389 -1.8068 -7.8870 23 6 5.0156 -0.4351 -7.7305 24 6 4.7128 0.1405 -6.5120 25 6 4.7897 1.6362 -6.3443 26 6 6.1593 2.0161 -5.7779 27 7 6.2345 3.4741 -5.6151 28 6 5.2910 3.9385 -4.5894 29 6 7.6052 3.8987 -5.3004 30 1 -0.3633 0.4191 0.9382 31 1 -0.3633 0.6032 -0.8321 32 1 -0.3632 -1.0222 -0.1063 33 1 1.8088 -1.9897 3.3853 34 1 0.7907 -2.1448 -2.0772 35 1 2.5012 -2.6051 -1.9033 36 1 1.4386 -2.5730 -0.4757 37 1 4.4464 0.7629 -3.9531 38 1 3.9764 -2.6654 -4.7697 39 1 4.5066 -3.6787 -6.9485 40 1 5.1713 -2.2539 -8.8423 41 1 5.3074 0.1873 -8.5635 42 1 4.6504 2.1180 -7.3121 43 1 4.0089 1.9656 -5.6588 44 1 6.2985 1.5343 -4.8102 45 1 6.9401 1.6867 -6.4635 46 1 5.5301 3.4676 -3.6358 47 1 5.3677 5.0212 -4.4887 48 1 4.2756 3.6715 -4.8821 49 1 8.2721 3.6026 -6.1102 50 1 7.6324 4.9822 -5.1846 51 1 7.9281 3.4262 -4.3728 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000276025005.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:11 Heat of formation + Delta-G solvation = -39.575185 kcal Electronic energy + Delta-G solvation = -31404.820373 eV Core-core repulsion = 27304.257484 eV Total energy + Delta-G solvation = -4100.562889 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.40193 -40.79530 -39.43364 -38.39952 -37.70514 -36.05989 -34.83940 -33.98815 -32.16683 -30.98560 -29.71055 -28.51373 -28.01277 -26.98619 -26.30129 -25.53811 -23.95431 -22.69495 -22.06744 -21.72456 -20.72187 -19.60173 -19.13291 -18.47764 -17.84243 -17.44159 -17.00066 -16.83600 -16.51717 -16.09572 -15.97414 -15.68484 -15.62069 -15.36614 -15.07950 -14.86014 -14.56441 -14.28683 -14.26588 -14.02936 -13.96150 -13.89722 -13.51669 -13.41215 -13.30603 -13.23065 -12.84320 -12.69338 -12.64870 -12.48282 -12.42921 -12.28116 -12.09156 -11.94818 -11.78477 -11.71210 -11.51773 -11.31637 -10.47262 -10.43690 -9.77600 -9.73539 -9.40515 -9.15208 -8.80474 -6.42181 -0.11371 0.41439 0.60396 1.19197 1.43757 1.50818 1.70512 1.98223 2.41483 2.42466 2.77429 2.91596 2.97890 3.13244 3.79481 3.86820 4.08094 4.10809 4.20548 4.27097 4.32568 4.38417 4.42307 4.45388 4.48087 4.50332 4.51463 4.56757 4.65872 4.66103 4.69421 4.71729 4.89030 4.89605 4.99252 5.00683 5.02009 5.04818 5.17463 5.18089 5.26083 5.33735 5.44488 5.53877 5.61483 5.71097 5.92114 5.96981 5.99199 6.01418 6.05367 6.28903 6.45624 6.57354 6.82719 7.28975 8.52535 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011116 B = 0.003172 C = 0.002590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2518.270426 B = 8823.870904 C =10809.278114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.236 3.764 3 H 0.042 0.958 4 C -0.626 4.626 5 H 0.031 0.969 6 C 0.005 3.995 7 N -0.914 5.914 8 Si 1.064 2.936 9 H -0.281 1.281 10 H -0.277 1.277 11 H -0.241 1.241 12 N -0.558 5.558 13 C 0.089 3.911 14 C 0.489 3.511 15 O -0.557 6.557 16 C 0.513 3.487 17 O -0.501 6.501 18 N -0.634 5.634 19 C 0.122 3.878 20 C -0.150 4.150 21 C -0.108 4.108 22 C -0.127 4.127 23 C -0.093 4.093 24 C -0.108 4.108 25 C -0.074 4.074 26 C 0.061 3.939 27 N -0.550 5.550 28 C 0.015 3.985 29 C 0.021 3.979 30 H 0.061 0.939 31 H 0.051 0.949 32 H 0.056 0.944 33 H 0.260 0.740 34 H 0.070 0.930 35 H 0.084 0.916 36 H 0.063 0.937 37 H 0.421 0.579 38 H 0.131 0.869 39 H 0.142 0.858 40 H 0.154 0.846 41 H 0.156 0.844 42 H 0.102 0.898 43 H 0.060 0.940 44 H 0.018 0.982 45 H 0.091 0.909 46 H 0.016 0.984 47 H 0.079 0.921 48 H 0.070 0.930 49 H 0.081 0.919 50 H 0.077 0.923 51 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.800 4.121 -25.683 27.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.134 3.866 3 H 0.060 0.940 4 C -0.664 4.664 5 H 0.049 0.951 6 C -0.197 4.197 7 N -0.547 5.547 8 Si 0.885 3.115 9 H -0.206 1.206 10 H -0.202 1.202 11 H -0.165 1.165 12 N -0.288 5.288 13 C -0.053 4.053 14 C 0.271 3.729 15 O -0.437 6.437 16 C 0.296 3.704 17 O -0.376 6.376 18 N -0.279 5.279 19 C 0.028 3.972 20 C -0.170 4.170 21 C -0.127 4.127 22 C -0.146 4.146 23 C -0.111 4.111 24 C -0.111 4.111 25 C -0.111 4.111 26 C -0.067 4.067 27 N -0.273 5.273 28 C -0.133 4.133 29 C -0.127 4.127 30 H 0.080 0.920 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.089 0.911 35 H 0.102 0.898 36 H 0.082 0.918 37 H 0.260 0.740 38 H 0.149 0.851 39 H 0.160 0.840 40 H 0.172 0.828 41 H 0.174 0.826 42 H 0.120 0.880 43 H 0.078 0.922 44 H 0.036 0.964 45 H 0.109 0.891 46 H 0.035 0.965 47 H 0.098 0.902 48 H 0.088 0.912 49 H 0.099 0.901 50 H 0.096 0.904 51 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 7.141 5.274 -24.953 26.485 hybrid contribution 0.841 -1.700 0.688 2.018 sum 7.982 3.574 -24.265 25.792 Atomic orbital electron populations 1.22334 0.95862 1.01604 1.01104 1.19145 0.92280 0.93563 0.81653 0.93989 1.22120 1.38082 1.13834 0.92330 0.95058 1.26816 0.92639 1.08513 0.91752 1.70972 1.44440 1.05031 1.34304 0.83843 0.78892 0.71744 0.77021 1.20621 1.20229 1.16489 1.47979 1.46307 1.13430 1.21039 1.21996 1.02006 0.79865 1.01398 1.20190 0.80932 0.86541 0.85274 1.90682 1.55487 1.19673 1.77895 1.20148 0.79615 0.85656 0.85029 1.90646 1.53665 1.18878 1.74408 1.43135 1.43291 1.25740 1.15761 1.17928 1.02069 0.92761 0.84398 1.21604 1.02029 0.93181 1.00192 1.21342 0.98104 1.01218 0.92011 1.21529 0.99622 0.93644 0.99775 1.21214 0.98306 0.95493 0.96070 1.19745 1.03474 0.95335 0.92562 1.20524 0.96837 0.90115 1.03664 1.22145 0.98003 0.87293 0.99309 1.62073 1.07236 1.12102 1.45916 1.22505 0.97033 1.01485 0.92272 1.22461 0.88687 1.01611 0.99927 0.92009 0.93012 0.92522 0.93116 0.91105 0.89804 0.91813 0.74042 0.85121 0.83990 0.82849 0.82635 0.88002 0.92160 0.96405 0.89057 0.96522 0.90228 0.91163 0.90057 0.90415 0.96235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.30 8.97 71.98 0.65 -5.66 16 2 C 0.24 11.26 2.23 44.25 0.10 11.36 16 3 H 0.04 2.13 5.70 -2.38 -0.01 2.12 16 4 C -0.63 -34.74 8.21 25.60 0.21 -34.53 16 5 H 0.03 1.90 7.62 -2.91 -0.02 1.88 16 6 C 0.01 0.30 5.14 84.66 0.43 0.74 16 7 N -0.91 -54.98 13.70 21.45 0.29 -54.68 16 8 Si 1.06 49.08 26.49 68.60 1.82 50.90 16 9 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 10 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 11 H -0.24 -9.79 6.00 99.48 0.60 -9.20 16 12 N -0.56 -23.89 2.75 -828.50 -2.28 -26.17 16 13 C 0.09 3.34 8.07 127.77 1.03 4.38 16 14 C 0.49 19.84 7.72 87.24 0.67 20.52 16 15 O -0.56 -24.56 15.84 -3.26 -0.05 -24.61 16 16 C 0.51 17.49 7.60 87.24 0.66 18.15 16 17 O -0.50 -17.26 10.33 -3.33 -0.03 -17.29 16 18 N -0.63 -18.11 4.92 -304.83 -1.50 -19.61 16 19 C 0.12 3.07 6.41 38.21 0.25 3.32 16 20 C -0.15 -3.79 8.78 22.40 0.20 -3.60 16 21 C -0.11 -2.04 10.04 22.25 0.22 -1.81 16 22 C -0.13 -1.85 10.04 22.30 0.22 -1.63 16 23 C -0.09 -1.38 9.68 22.25 0.22 -1.16 16 24 C -0.11 -2.11 5.15 -19.73 -0.10 -2.21 16 25 C -0.07 -1.29 4.64 29.85 0.14 -1.15 16 26 C 0.06 1.06 4.85 86.30 0.42 1.48 16 27 N -0.55 -9.84 5.02 -948.86 -4.76 -14.60 16 28 C 0.02 0.30 9.32 127.69 1.19 1.49 16 29 C 0.02 0.32 9.57 127.69 1.22 1.54 16 30 H 0.06 2.63 5.11 -2.39 -0.01 2.61 16 31 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.06 2.27 7.48 -2.39 -0.02 2.25 16 33 H 0.26 15.73 8.73 -92.70 -0.81 14.92 16 34 H 0.07 2.36 8.11 -2.39 -0.02 2.34 16 35 H 0.08 3.01 5.91 -2.39 -0.01 2.99 16 36 H 0.06 2.57 7.08 -2.39 -0.02 2.55 16 37 H 0.42 11.55 6.30 -92.71 -0.58 10.97 16 38 H 0.13 3.81 5.62 -2.91 -0.02 3.80 16 39 H 0.14 2.08 8.06 -2.91 -0.02 2.05 16 40 H 0.15 1.28 8.06 -2.91 -0.02 1.26 16 41 H 0.16 1.41 8.06 -2.91 -0.02 1.38 16 42 H 0.10 1.48 8.05 -2.39 -0.02 1.46 16 43 H 0.06 1.23 5.72 -2.38 -0.01 1.22 16 44 H 0.02 0.37 7.37 -2.39 -0.02 0.35 16 45 H 0.09 1.36 8.06 -2.38 -0.02 1.34 16 46 H 0.02 0.37 8.14 -2.38 -0.02 0.35 16 47 H 0.08 1.36 8.12 -2.39 -0.02 1.34 16 48 H 0.07 1.39 6.47 -2.39 -0.02 1.37 16 49 H 0.08 0.99 8.12 -2.39 -0.02 0.97 16 50 H 0.08 1.03 8.12 -2.39 -0.02 1.01 16 51 H 0.02 0.32 8.14 -2.39 -0.02 0.30 16 Total: -1.00 -66.77 401.99 1.43 -65.35 By element: Atomic # 1 Polarization: 29.30 SS G_CDS: 0.21 Total: 29.51 kcal Atomic # 6 Polarization: 3.48 SS G_CDS: 7.73 Total: 11.22 kcal Atomic # 7 Polarization: -106.82 SS G_CDS: -8.25 Total: -115.07 kcal Atomic # 8 Polarization: -41.82 SS G_CDS: -0.09 Total: -41.91 kcal Atomic # 14 Polarization: 49.08 SS G_CDS: 1.82 Total: 50.90 kcal Total: -66.77 1.43 -65.35 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276025005.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.773 kcal (2) G-P(sol) polarization free energy of solvation -66.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds