Wall clock time and date at job start Wed Apr 1 2020 04:55:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.47024 * 2 1 4 4 C 1.50689 * 109.47463 * 239.99716 * 2 1 3 5 5 H 1.08001 * 120.00468 * 240.00513 * 4 2 1 6 6 C 1.37880 * 120.00064 * 60.27644 * 4 2 1 7 7 N 1.31510 * 119.99705 * 359.72413 * 6 4 2 8 8 Si 1.86803 * 120.00297 * 179.72545 * 6 4 2 9 9 H 1.48505 * 109.46822 * 60.00134 * 8 6 4 10 10 H 1.48497 * 109.47182 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.47231 * 300.00412 * 8 6 4 12 12 N 1.46505 * 109.46836 * 119.99605 * 2 1 3 13 13 C 1.46501 * 119.99945 * 60.00229 * 12 2 1 14 14 S 1.65598 * 120.00159 * 240.00089 * 12 2 1 15 15 O 1.42097 * 106.40453 * 203.54463 * 14 12 2 16 16 O 1.42099 * 106.40110 * 336.46404 * 14 12 2 17 17 N 1.65599 * 107.21818 * 89.99864 * 14 12 2 18 18 C 1.46507 * 119.99630 * 90.00401 * 17 14 12 19 19 C 1.52999 * 109.46633 * 266.09141 * 18 17 14 20 20 N 1.46906 * 109.46979 * 174.15650 * 19 18 17 21 21 C 1.46897 * 110.99968 * 169.99778 * 20 19 18 22 22 C 1.46896 * 111.00304 * 293.95512 * 20 19 18 23 23 C 1.46496 * 120.00173 * 270.00048 * 17 14 12 24 24 C 1.54268 * 110.03122 * 230.89365 * 23 17 14 25 25 C 1.54967 * 104.15965 * 217.13848 * 24 23 17 26 26 C 1.54886 * 102.77791 * 37.88839 * 25 24 23 27 27 C 1.53875 * 110.03177 * 113.67745 * 23 17 14 28 28 H 1.08997 * 109.47024 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47114 * 300.00501 * 1 2 3 30 30 H 1.09001 * 109.46686 * 60.00041 * 1 2 3 31 31 H 0.97008 * 119.99885 * 180.02562 * 7 6 4 32 32 H 1.09003 * 109.46984 * 89.99675 * 13 12 2 33 33 H 1.08995 * 109.47042 * 209.99569 * 13 12 2 34 34 H 1.08996 * 109.47176 * 330.00028 * 13 12 2 35 35 H 1.08995 * 109.47035 * 26.08777 * 18 17 14 36 36 H 1.08999 * 109.47058 * 146.09464 * 18 17 14 37 37 H 1.08996 * 109.47418 * 294.15556 * 19 18 17 38 38 H 1.08996 * 109.47683 * 54.16024 * 19 18 17 39 39 H 1.09003 * 109.47212 * 60.00528 * 21 20 19 40 40 H 1.09005 * 109.46991 * 179.97438 * 21 20 19 41 41 H 1.08995 * 109.47727 * 300.00259 * 21 20 19 42 42 H 1.09009 * 109.46862 * 59.99689 * 22 20 19 43 43 H 1.08995 * 109.47458 * 179.97438 * 22 20 19 44 44 H 1.09002 * 109.47198 * 300.00416 * 22 20 19 45 45 H 1.08998 * 110.01766 * 352.28478 * 23 17 14 46 46 H 1.08998 * 110.48661 * 335.78333 * 24 23 17 47 47 H 1.08999 * 110.48321 * 98.43089 * 24 23 17 48 48 H 1.09007 * 110.71926 * 279.57768 * 25 24 23 49 49 H 1.08998 * 110.92553 * 156.30044 * 25 24 23 50 50 H 1.08998 * 110.48844 * 203.40928 * 26 25 24 51 51 H 1.09001 * 110.59993 * 80.81647 * 26 25 24 52 52 H 1.08991 * 110.03453 * 238.56851 * 27 23 17 53 53 H 1.09007 * 110.03213 * 359.95081 * 27 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2303 5 1 2.6533 -1.5885 -1.1312 6 6 1.7041 -0.2361 -2.4826 7 7 0.9480 0.8331 -2.6034 8 14 2.3332 -1.1122 -4.0078 9 1 1.8387 -2.5126 -4.0136 10 1 1.8422 -0.4095 -5.2203 11 1 3.8181 -1.1117 -4.0019 12 7 2.0183 -0.6906 1.1963 13 6 1.6644 -2.0931 1.4282 14 16 2.9703 0.1142 2.2863 15 8 3.7118 -0.8788 2.9816 16 8 3.5793 1.1830 1.5749 17 7 1.9606 0.8092 3.3998 18 6 1.5812 0.0700 4.6064 19 6 0.2564 -0.6562 4.3641 20 7 -0.0539 -1.5076 5.5204 21 6 -1.4221 -2.0352 5.4334 22 6 0.9232 -2.5969 5.6495 23 6 1.4468 2.1631 3.1783 24 6 1.6923 3.0326 4.4287 25 6 0.4304 3.9272 4.5221 26 6 -0.7043 2.9650 4.0914 27 6 -0.0763 2.1203 2.9635 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 0.7167 1.1666 -3.4845 32 1 2.4157 -2.7377 0.9718 33 1 1.6238 -2.2851 2.5003 34 1 0.6904 -2.3002 0.9848 35 1 2.3562 -0.6582 4.8452 36 1 1.4674 0.7655 5.4379 37 1 -0.5396 0.0758 4.2279 38 1 0.3389 -1.2739 3.4699 39 1 -1.5257 -2.6284 4.5249 40 1 -1.6254 -2.6624 6.3015 41 1 -2.1302 -1.2070 5.4093 42 1 1.9202 -2.1767 5.7823 43 1 0.6702 -3.2114 6.5133 44 1 0.9046 -3.2103 4.7487 45 1 1.9337 2.6098 2.3114 46 1 1.7828 2.4070 5.3166 47 1 2.5854 3.6438 4.2989 48 1 0.5036 4.7702 3.8350 49 1 0.2748 4.2754 5.5432 50 1 -1.5593 3.5272 3.7159 51 1 -1.0035 2.3279 4.9237 52 1 -0.3286 2.5469 1.9928 53 1 -0.4330 1.0920 3.0232 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330404250.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:55:39 Heat of formation + Delta-G solvation = -84.612208 kcal Electronic energy + Delta-G solvation = -32676.993416 eV Core-core repulsion = 28709.921527 eV Total energy + Delta-G solvation = -3967.071889 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.203 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.15825 -38.61932 -38.07923 -37.83695 -36.93860 -35.29611 -34.55174 -31.00018 -30.59220 -29.65111 -28.41333 -27.92009 -27.30639 -27.03801 -24.92005 -22.69200 -22.17422 -21.28050 -21.10296 -19.83482 -19.13874 -18.60591 -18.22066 -17.48179 -16.87802 -16.41363 -16.26629 -16.19485 -15.97278 -15.61153 -15.28433 -14.95397 -14.68998 -14.59592 -14.23621 -14.12927 -13.90012 -13.71553 -13.53690 -13.45201 -13.23358 -13.17990 -13.11178 -13.01481 -12.82307 -12.64994 -12.60966 -12.54356 -12.41101 -12.33228 -12.21671 -12.17617 -11.92861 -11.88954 -11.84756 -11.59094 -11.40913 -11.17659 -11.12661 -10.51533 -10.04960 -9.67941 -9.29684 -8.12850 -6.26265 -0.40898 1.40452 1.42533 1.49392 1.92648 2.39945 2.50788 3.04018 3.15147 3.33774 3.60230 3.76425 3.93101 3.93515 4.03197 4.13297 4.25402 4.38359 4.44610 4.52265 4.54779 4.57952 4.61241 4.65903 4.71193 4.73133 4.76337 4.77531 4.88012 4.89846 4.98231 5.01724 5.04887 5.07458 5.09863 5.11541 5.13676 5.16550 5.18454 5.30206 5.42489 5.45568 5.56605 5.58874 5.63694 5.80562 5.87059 6.06850 6.10103 6.14194 6.29663 6.80331 7.42400 8.90748 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011310 B = 0.004588 C = 0.004103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2475.132032 B = 6101.175118 C = 6822.649662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.279 3.721 3 H 0.022 0.978 4 C -0.542 4.542 5 H 0.052 0.948 6 C 0.021 3.979 7 N -0.910 5.910 8 Si 0.952 3.048 9 H -0.267 1.267 10 H -0.280 1.280 11 H -0.281 1.281 12 N -0.995 5.995 13 C 0.109 3.891 14 S 2.782 3.218 15 O -1.007 7.007 16 O -1.015 7.015 17 N -0.989 5.989 18 C 0.116 3.884 19 C 0.026 3.974 20 N -0.544 5.544 21 C 0.024 3.976 22 C 0.012 3.988 23 C 0.136 3.864 24 C -0.130 4.130 25 C -0.116 4.116 26 C -0.112 4.112 27 C -0.146 4.146 28 H 0.037 0.963 29 H 0.041 0.959 30 H 0.065 0.935 31 H 0.265 0.735 32 H 0.040 0.960 33 H 0.070 0.930 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.112 0.888 37 H 0.096 0.904 38 H 0.029 0.971 39 H 0.021 0.979 40 H 0.082 0.918 41 H 0.074 0.926 42 H 0.067 0.933 43 H 0.085 0.915 44 H 0.021 0.979 45 H 0.072 0.928 46 H 0.090 0.910 47 H 0.066 0.934 48 H 0.066 0.934 49 H 0.088 0.912 50 H 0.072 0.928 51 H 0.078 0.922 52 H 0.057 0.943 53 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.277 -0.237 18.730 20.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.175 3.825 3 H 0.040 0.960 4 C -0.581 4.581 5 H 0.070 0.930 6 C -0.179 4.179 7 N -0.549 5.549 8 Si 0.778 3.222 9 H -0.192 1.192 10 H -0.205 1.205 11 H -0.207 1.207 12 N -0.836 5.836 13 C -0.037 4.037 14 S 2.794 3.206 15 O -0.991 6.991 16 O -0.999 6.999 17 N -0.828 5.828 18 C -0.009 4.009 19 C -0.104 4.104 20 N -0.269 5.269 21 C -0.124 4.124 22 C -0.136 4.136 23 C 0.031 3.969 24 C -0.169 4.169 25 C -0.154 4.154 26 C -0.150 4.150 27 C -0.185 4.185 28 H 0.056 0.944 29 H 0.060 0.940 30 H 0.084 0.916 31 H 0.074 0.926 32 H 0.058 0.942 33 H 0.089 0.911 34 H 0.095 0.905 35 H 0.100 0.900 36 H 0.130 0.870 37 H 0.114 0.886 38 H 0.048 0.952 39 H 0.039 0.961 40 H 0.100 0.900 41 H 0.093 0.907 42 H 0.086 0.914 43 H 0.104 0.896 44 H 0.040 0.960 45 H 0.090 0.910 46 H 0.108 0.892 47 H 0.085 0.915 48 H 0.084 0.916 49 H 0.107 0.893 50 H 0.091 0.909 51 H 0.097 0.903 52 H 0.076 0.924 53 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -6.345 0.195 18.997 20.030 hybrid contribution 0.226 -0.966 -2.292 2.498 sum -6.119 -0.771 16.705 17.807 Atomic orbital electron populations 1.21917 0.96645 0.99910 1.00728 1.18329 0.92298 0.90992 0.80853 0.96045 1.21616 1.31865 1.12961 0.91672 0.92961 1.25585 0.95209 0.95674 1.01455 1.69959 1.37134 1.23448 1.24371 0.85712 0.78422 0.79078 0.79020 1.19224 1.20491 1.20660 1.57632 1.69871 1.20725 1.35401 1.21282 1.01567 0.80789 1.00040 1.01637 0.74140 0.72398 0.72464 1.93485 1.70105 1.60842 1.74623 1.93526 1.75515 1.57229 1.73592 1.57892 1.66315 1.24313 1.34325 1.21471 0.96301 0.96022 0.87112 1.22931 0.98894 0.96928 0.91601 1.61996 1.03666 1.20836 1.40355 1.22438 0.88853 1.00178 1.00925 1.22568 0.96529 0.93351 1.01133 1.21721 0.95177 0.80507 0.99544 1.22764 0.99312 0.97753 0.97052 1.22455 0.93246 0.97273 1.02410 1.22289 0.97837 0.97465 0.97409 1.22825 0.93795 1.02049 0.99808 0.94360 0.94035 0.91592 0.92618 0.94163 0.91130 0.90467 0.90049 0.86959 0.88587 0.95250 0.96070 0.89955 0.90676 0.91411 0.89613 0.95998 0.90987 0.89185 0.91523 0.91551 0.89336 0.90888 0.90332 0.92449 0.90091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.85 8.95 71.98 0.64 -5.21 16 2 C 0.28 13.77 2.62 44.24 0.12 13.89 16 3 H 0.02 1.22 6.91 -2.39 -0.02 1.20 16 4 C -0.54 -29.68 8.37 25.60 0.21 -29.47 16 5 H 0.05 2.87 7.65 -2.91 -0.02 2.85 16 6 C 0.02 1.15 5.31 84.66 0.45 1.60 16 7 N -0.91 -51.01 11.33 21.45 0.24 -50.77 16 8 Si 0.95 43.64 29.54 68.60 2.03 45.67 16 9 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 10 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 11 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 12 N -1.00 -41.71 3.12 -520.45 -1.62 -43.34 16 13 C 0.11 3.88 8.86 127.77 1.13 5.01 16 14 S 2.78 113.45 6.06 -56.49 -0.34 113.10 16 15 O -1.01 -42.24 15.77 -128.00 -2.02 -44.26 16 16 O -1.01 -49.99 15.23 -128.00 -1.95 -51.94 16 17 N -0.99 -29.97 2.80 -489.65 -1.37 -31.35 16 18 C 0.12 2.80 5.43 86.38 0.47 3.27 16 19 C 0.03 0.57 4.43 86.30 0.38 0.95 16 20 N -0.54 -10.47 5.02 -948.85 -4.76 -15.23 16 21 C 0.02 0.38 9.57 127.69 1.22 1.60 16 22 C 0.01 0.23 9.33 127.69 1.19 1.42 16 23 C 0.14 3.88 3.34 45.72 0.15 4.03 16 24 C -0.13 -2.78 6.39 31.70 0.20 -2.58 16 25 C -0.12 -1.98 6.91 31.91 0.22 -1.76 16 26 C -0.11 -2.00 6.83 31.67 0.22 -1.78 16 27 C -0.15 -3.62 5.17 31.32 0.16 -3.45 16 28 H 0.04 1.59 6.66 -2.39 -0.02 1.57 16 29 H 0.04 1.56 6.55 -2.39 -0.02 1.55 16 30 H 0.07 3.29 6.08 -2.39 -0.01 3.27 16 31 H 0.26 14.13 8.31 -92.70 -0.77 13.36 16 32 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.07 2.13 6.27 -2.39 -0.01 2.11 16 34 H 0.08 2.63 6.43 -2.39 -0.02 2.61 16 35 H 0.08 2.12 5.09 -2.39 -0.01 2.11 16 36 H 0.11 2.22 5.82 -2.39 -0.01 2.21 16 37 H 0.10 2.00 5.51 -2.39 -0.01 1.99 16 38 H 0.03 0.75 5.77 -2.39 -0.01 0.74 16 39 H 0.02 0.36 8.14 -2.39 -0.02 0.34 16 40 H 0.08 1.06 8.12 -2.38 -0.02 1.04 16 41 H 0.07 1.08 8.12 -2.39 -0.02 1.06 16 42 H 0.07 1.36 6.36 -2.38 -0.02 1.35 16 43 H 0.09 1.28 8.12 -2.39 -0.02 1.26 16 44 H 0.02 0.44 8.14 -2.39 -0.02 0.42 16 45 H 0.07 2.53 6.86 -2.39 -0.02 2.51 16 46 H 0.09 1.69 5.67 -2.39 -0.01 1.67 16 47 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 48 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 49 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 50 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 51 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 52 H 0.06 1.61 7.99 -2.39 -0.02 1.59 16 53 H 0.08 2.01 4.20 -2.38 -0.01 2.00 16 Total: -1.00 -67.11 399.32 -2.13 -69.24 By element: Atomic # 1 Polarization: 20.44 SS G_CDS: 0.89 Total: 21.33 kcal Atomic # 6 Polarization: -19.23 SS G_CDS: 6.77 Total: -12.46 kcal Atomic # 7 Polarization: -133.17 SS G_CDS: -7.51 Total: -140.69 kcal Atomic # 8 Polarization: -92.23 SS G_CDS: -3.97 Total: -96.20 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Atomic # 16 Polarization: 113.45 SS G_CDS: -0.34 Total: 113.10 kcal Total: -67.11 -2.13 -69.24 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330404250.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.374 kcal (2) G-P(sol) polarization free energy of solvation -67.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds