Wall clock time and date at job start Wed Apr 1 2020 04:54:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09007 * 109.46584 * 2 1 4 4 C 1.50698 * 109.46906 * 120.00038 * 2 1 3 5 5 H 1.07994 * 120.00020 * 120.00571 * 4 2 1 6 6 C 1.37876 * 120.00034 * 299.99735 * 4 2 1 7 7 N 1.31513 * 119.99997 * 180.02562 * 6 4 2 8 8 Si 1.86807 * 120.00222 * 0.02562 * 6 4 2 9 9 H 1.48494 * 109.46819 * 89.99383 * 8 6 4 10 10 H 1.48494 * 109.47113 * 209.99757 * 8 6 4 11 11 H 1.48501 * 109.46700 * 329.99827 * 8 6 4 12 12 N 1.46494 * 109.47224 * 240.00138 * 2 1 3 13 13 C 1.46505 * 120.00044 * 300.00088 * 12 2 1 14 14 S 1.65603 * 120.00233 * 119.99704 * 12 2 1 15 15 O 1.42099 * 106.39927 * 156.45984 * 14 12 2 16 16 O 1.42099 * 106.39969 * 23.54322 * 14 12 2 17 17 N 1.65594 * 107.21818 * 270.00205 * 14 12 2 18 18 C 1.46498 * 120.00122 * 269.99395 * 17 14 12 19 19 C 1.46508 * 120.00232 * 90.00129 * 17 14 12 20 20 C 1.52994 * 109.46990 * 94.99587 * 19 17 14 21 21 C 1.53002 * 109.46781 * 185.38256 * 20 19 17 22 22 H 1.08994 * 109.46289 * 55.55883 * 21 20 19 23 23 C 1.53039 * 109.46026 * 295.57703 * 21 20 19 24 24 C 1.53123 * 109.27883 * 180.81510 * 23 21 20 25 25 C 1.53125 * 109.15674 * 57.65608 * 24 23 21 26 26 C 1.53030 * 109.27772 * 302.34550 * 25 24 23 27 27 N 1.46822 * 109.52268 * 59.18119 * 26 25 24 28 28 C 1.46897 * 110.99070 * 174.15400 * 27 26 25 29 29 H 1.09000 * 109.47213 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47112 * 299.99925 * 1 2 3 31 31 H 1.09000 * 109.47032 * 60.00067 * 1 2 3 32 32 H 0.97004 * 120.00460 * 180.02562 * 7 6 4 33 33 H 1.08998 * 109.46522 * 270.00036 * 13 12 2 34 34 H 1.09001 * 109.47113 * 29.99461 * 13 12 2 35 35 H 1.08998 * 109.47339 * 149.99977 * 13 12 2 36 36 H 1.08998 * 109.47761 * 270.00565 * 18 17 14 37 37 H 1.09001 * 109.46921 * 30.00340 * 18 17 14 38 38 H 1.08996 * 109.47565 * 150.00173 * 18 17 14 39 39 H 1.09001 * 109.46616 * 334.99644 * 19 17 14 40 40 H 1.09001 * 109.46852 * 214.99887 * 19 17 14 41 41 H 1.08996 * 109.47341 * 65.38510 * 20 19 17 42 42 H 1.09004 * 109.47502 * 305.37637 * 20 19 17 43 43 H 1.09002 * 109.50361 * 300.75865 * 23 21 20 44 44 H 1.09004 * 109.50344 * 60.88028 * 23 21 20 45 45 H 1.08993 * 109.52636 * 177.55934 * 24 23 21 46 46 H 1.08996 * 109.52361 * 297.69009 * 24 23 21 47 47 H 1.08997 * 109.50185 * 62.28947 * 25 24 23 48 48 H 1.08999 * 109.49832 * 182.40378 * 25 24 23 49 49 H 1.09010 * 109.46032 * 179.19962 * 26 25 24 50 50 H 1.09004 * 109.46485 * 299.17371 * 26 25 24 51 51 H 1.08998 * 109.47120 * 190.67852 * 28 27 26 52 52 H 1.09007 * 109.47043 * 310.67677 * 28 27 26 53 53 H 1.08994 * 109.46896 * 70.67827 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5884 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 2.1380 -0.8590 3.5565 8 14 0.6248 1.2791 2.6542 9 1 -0.8028 0.8727 2.6997 10 1 0.9759 1.9951 3.9068 11 1 0.8471 2.1765 1.4921 12 7 2.0184 -0.6905 -1.1961 13 6 1.6644 -2.0932 -1.4280 14 16 2.9704 0.1143 -2.2862 15 8 3.7118 -0.8789 -2.9814 16 8 3.5794 1.1830 -1.5748 17 7 1.9607 0.8091 -3.3997 18 6 1.5813 0.0699 -4.6063 19 6 1.4468 2.1631 -3.1783 20 6 2.3413 3.1725 -3.9007 21 6 1.8853 4.5928 -3.5607 22 1 1.8811 4.7237 -2.4787 23 6 0.4740 4.8197 -4.1074 24 6 0.0297 6.2486 -3.7827 25 6 1.0337 7.2359 -4.3844 26 6 2.4287 6.9390 -3.8298 27 7 2.8077 5.5612 -4.1671 28 6 4.1953 5.2854 -3.7716 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.9034 -0.5279 4.4376 33 1 2.4158 -2.7376 -0.9717 34 1 0.6905 -2.3002 -0.9846 35 1 1.6238 -2.2852 -2.5002 36 1 2.2999 0.2758 -5.3996 37 1 1.5744 -0.9985 -4.3907 38 1 0.5874 0.3824 -4.9265 39 1 1.4431 2.3800 -2.1101 40 1 0.4310 2.2342 -3.5672 41 1 2.2704 3.0159 -4.9770 42 1 3.3745 3.0364 -3.5810 43 1 0.4746 4.6754 -5.1878 44 1 -0.2135 4.1111 -3.6453 45 1 -0.9576 6.4286 -4.2078 46 1 -0.0095 6.3811 -2.7015 47 1 1.0430 7.1296 -5.4692 48 1 0.7460 8.2536 -4.1204 49 1 3.1483 7.6312 -4.2672 50 1 2.4219 7.0587 -2.7464 51 1 4.5121 4.3334 -4.1975 52 1 4.8430 6.0814 -4.1393 53 1 4.2604 5.2368 -2.6847 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330412663.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:54:39 Heat of formation + Delta-G solvation = -91.447572 kcal Electronic energy + Delta-G solvation = -31473.248827 eV Core-core repulsion = 27505.880534 eV Total energy + Delta-G solvation = -3967.368293 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.203 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.39215 -38.48693 -38.09523 -37.57980 -36.92819 -34.56292 -34.50879 -33.68244 -31.81638 -29.74844 -27.71092 -27.38452 -27.09187 -26.67470 -24.72851 -23.57090 -22.61734 -21.85252 -20.61596 -19.89654 -19.02282 -18.78117 -18.22260 -17.50808 -17.00267 -16.58103 -16.31460 -15.97532 -15.56818 -15.40094 -15.25472 -15.10959 -14.97396 -14.65030 -14.58710 -14.29897 -14.15455 -13.93353 -13.84616 -13.63861 -13.50196 -13.30892 -13.19378 -13.12360 -13.06215 -12.96249 -12.88112 -12.80567 -12.62622 -12.46367 -12.18764 -12.06802 -11.99480 -11.73536 -11.57057 -11.48238 -11.35544 -11.26105 -11.01865 -10.78235 -10.08832 -9.76482 -9.33064 -8.32122 -6.37540 -0.46062 1.27268 1.36366 1.44524 1.94967 2.29479 2.47277 2.91229 3.02458 3.27822 3.67724 3.81987 3.83719 3.98147 4.02697 4.13304 4.25402 4.32758 4.36638 4.41820 4.43658 4.52112 4.53561 4.59007 4.62492 4.66310 4.67868 4.73918 4.75487 4.79659 4.82840 4.86944 4.94955 4.96875 4.99816 5.08173 5.09669 5.11977 5.13587 5.20150 5.23815 5.27676 5.32587 5.45434 5.52062 5.57592 5.62676 5.88078 6.07915 6.16529 6.31785 6.66841 7.27121 8.84847 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010899 B = 0.004021 C = 0.003379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2568.473007 B = 6961.614841 C = 8283.353585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.243 3.757 3 H 0.041 0.959 4 C -0.529 4.529 5 H 0.037 0.963 6 C 0.016 3.984 7 N -0.945 5.945 8 Si 0.940 3.060 9 H -0.249 1.249 10 H -0.299 1.299 11 H -0.247 1.247 12 N -0.994 5.994 13 C 0.103 3.897 14 S 2.785 3.215 15 O -1.007 7.007 16 O -1.010 7.010 17 N -1.002 6.002 18 C 0.087 3.913 19 C 0.122 3.878 20 C -0.130 4.130 21 C 0.085 3.915 22 H 0.023 0.977 23 C -0.110 4.110 24 C -0.125 4.125 25 C -0.112 4.112 26 C 0.050 3.950 27 N -0.539 5.539 28 C 0.019 3.981 29 H 0.068 0.932 30 H 0.041 0.959 31 H 0.074 0.926 32 H 0.267 0.733 33 H 0.030 0.970 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.061 0.939 37 H 0.069 0.931 38 H 0.106 0.894 39 H 0.059 0.941 40 H 0.118 0.882 41 H 0.090 0.910 42 H 0.046 0.954 43 H 0.080 0.920 44 H 0.080 0.920 45 H 0.081 0.919 46 H 0.051 0.949 47 H 0.073 0.927 48 H 0.078 0.922 49 H 0.083 0.917 50 H 0.021 0.979 51 H 0.066 0.934 52 H 0.081 0.919 53 H 0.011 0.989 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.703 13.068 -21.149 26.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.137 3.863 3 H 0.059 0.941 4 C -0.569 4.569 5 H 0.056 0.944 6 C -0.183 4.183 7 N -0.585 5.585 8 Si 0.766 3.234 9 H -0.174 1.174 10 H -0.227 1.227 11 H -0.171 1.171 12 N -0.834 5.834 13 C -0.042 4.042 14 S 2.796 3.204 15 O -0.991 6.991 16 O -0.994 6.994 17 N -0.844 5.844 18 C -0.057 4.057 19 C -0.003 4.003 20 C -0.169 4.169 21 C -0.024 4.024 22 H 0.041 0.959 23 C -0.148 4.148 24 C -0.162 4.162 25 C -0.150 4.150 26 C -0.078 4.078 27 N -0.264 5.264 28 C -0.129 4.129 29 H 0.087 0.913 30 H 0.059 0.941 31 H 0.093 0.907 32 H 0.076 0.924 33 H 0.049 0.951 34 H 0.103 0.897 35 H 0.105 0.895 36 H 0.080 0.920 37 H 0.088 0.912 38 H 0.125 0.875 39 H 0.078 0.922 40 H 0.136 0.864 41 H 0.109 0.891 42 H 0.064 0.936 43 H 0.098 0.902 44 H 0.099 0.901 45 H 0.099 0.901 46 H 0.069 0.931 47 H 0.092 0.908 48 H 0.096 0.904 49 H 0.101 0.899 50 H 0.039 0.961 51 H 0.085 0.915 52 H 0.100 0.900 53 H 0.030 0.970 Dipole moment (debyes) X Y Z Total from point charges -7.780 13.027 -21.498 26.313 hybrid contribution 0.153 0.198 2.057 2.072 sum -7.626 13.225 -19.441 24.719 Atomic orbital electron populations 1.22362 0.96002 1.02627 1.00538 1.18836 0.92620 0.92227 0.82597 0.94084 1.21473 1.31617 1.13104 0.90664 0.94428 1.25798 0.97368 0.99900 0.95196 1.70035 1.47347 1.42441 0.98649 0.86007 0.79868 0.79910 0.77646 1.17444 1.22730 1.17114 1.57497 1.70118 1.21173 1.34634 1.21376 1.01711 0.80060 1.01068 1.01635 0.73955 0.72379 0.72471 1.93511 1.69803 1.61122 1.74636 1.93533 1.75197 1.56986 1.73665 1.57741 1.67518 1.24485 1.34632 1.21743 1.02951 0.95661 0.85332 1.21491 0.99485 0.79157 1.00207 1.22083 0.99249 0.93313 1.02295 1.21638 0.94087 0.91153 0.95545 0.95930 1.21705 0.93366 0.97452 1.02229 1.21623 0.99509 0.94697 1.00382 1.21570 0.92875 0.99344 1.01171 1.22212 0.98598 0.89177 0.97821 1.62013 1.02117 1.03102 1.59186 1.22438 0.89930 1.02708 0.97837 0.91342 0.94068 0.90740 0.92378 0.95132 0.89723 0.89543 0.92044 0.91215 0.87534 0.92220 0.86360 0.89140 0.93552 0.90158 0.90140 0.90087 0.93060 0.90829 0.90356 0.89873 0.96087 0.91509 0.89994 0.96995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.80 8.65 71.98 0.62 -5.17 16 2 C 0.24 11.06 2.21 44.25 0.10 11.15 16 3 H 0.04 1.99 5.97 -2.38 -0.01 1.98 16 4 C -0.53 -30.08 8.95 25.60 0.23 -29.86 16 5 H 0.04 2.39 7.89 -2.91 -0.02 2.37 16 6 C 0.02 0.90 5.45 84.65 0.46 1.36 16 7 N -0.94 -58.96 13.96 21.45 0.30 -58.66 16 8 Si 0.94 43.48 24.37 68.60 1.67 45.16 16 9 H -0.25 -10.41 6.87 99.48 0.68 -9.72 16 10 H -0.30 -14.05 7.11 99.48 0.71 -13.35 16 11 H -0.25 -10.63 6.53 99.48 0.65 -9.98 16 12 N -0.99 -39.49 3.12 -520.44 -1.62 -41.12 16 13 C 0.10 3.51 9.53 127.77 1.22 4.73 16 14 S 2.79 106.13 5.96 -56.49 -0.34 105.79 16 15 O -1.01 -41.18 16.28 -128.00 -2.08 -43.26 16 16 O -1.01 -46.23 15.67 -128.00 -2.01 -48.24 16 17 N -1.00 -26.12 3.24 -539.13 -1.75 -27.86 16 18 C 0.09 1.58 10.33 127.77 1.32 2.90 16 19 C 0.12 2.82 4.97 86.38 0.43 3.25 16 20 C -0.13 -2.98 4.74 30.59 0.14 -2.84 16 21 C 0.08 1.83 1.90 44.94 0.09 1.92 16 22 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 23 C -0.11 -1.71 5.10 30.65 0.16 -1.56 16 24 C -0.12 -1.77 6.00 30.68 0.18 -1.59 16 25 C -0.11 -1.55 6.09 30.65 0.19 -1.37 16 26 C 0.05 0.88 5.46 86.33 0.47 1.35 16 27 N -0.54 -11.35 4.75 -897.23 -4.26 -15.61 16 28 C 0.02 0.43 8.89 127.69 1.13 1.56 16 29 H 0.07 2.41 6.66 -2.39 -0.02 2.39 16 30 H 0.04 1.59 3.27 -2.39 -0.01 1.59 16 31 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 32 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 33 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.08 2.65 6.43 -2.39 -0.02 2.63 16 35 H 0.09 2.27 7.37 -2.39 -0.02 2.26 16 36 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.07 1.26 7.37 -2.39 -0.02 1.24 16 38 H 0.11 1.17 7.94 -2.39 -0.02 1.15 16 39 H 0.06 1.66 7.61 -2.39 -0.02 1.64 16 40 H 0.12 1.80 6.66 -2.39 -0.02 1.79 16 41 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 42 H 0.05 1.32 6.21 -2.38 -0.01 1.31 16 43 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 44 H 0.08 1.08 6.71 -2.39 -0.02 1.06 16 45 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 46 H 0.05 0.82 8.14 -2.39 -0.02 0.81 16 47 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 48 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 49 H 0.08 1.28 8.01 -2.38 -0.02 1.26 16 50 H 0.02 0.42 8.14 -2.38 -0.02 0.40 16 51 H 0.07 1.56 6.52 -2.39 -0.02 1.55 16 52 H 0.08 1.50 7.97 -2.38 -0.02 1.48 16 53 H 0.01 0.30 8.12 -2.39 -0.02 0.28 16 Total: -1.00 -76.03 404.71 -2.56 -78.59 By element: Atomic # 1 Polarization: 18.59 SS G_CDS: 0.79 Total: 19.38 kcal Atomic # 6 Polarization: -20.91 SS G_CDS: 6.74 Total: -14.16 kcal Atomic # 7 Polarization: -135.92 SS G_CDS: -7.33 Total: -143.25 kcal Atomic # 8 Polarization: -87.41 SS G_CDS: -4.09 Total: -91.50 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 1.67 Total: 45.16 kcal Atomic # 16 Polarization: 106.13 SS G_CDS: -0.34 Total: 105.79 kcal Total: -76.03 -2.56 -78.59 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330412663.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.860 kcal (2) G-P(sol) polarization free energy of solvation -76.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds