Wall clock time and date at job start Wed Apr 1 2020 04:54:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47004 * 2 1 4 4 C 1.50702 * 109.46967 * 240.00504 * 2 1 3 5 5 H 1.07998 * 119.99555 * 240.00367 * 4 2 1 6 6 C 1.37871 * 120.00283 * 59.99488 * 4 2 1 7 7 N 1.31516 * 120.00053 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 120.00123 * 0.02562 * 6 4 2 9 9 H 1.48494 * 109.47244 * 270.00137 * 8 6 4 10 10 H 1.48507 * 109.46952 * 30.00142 * 8 6 4 11 11 H 1.48497 * 109.47405 * 149.99619 * 8 6 4 12 12 N 1.46500 * 109.47127 * 120.00164 * 2 1 3 13 13 C 1.46493 * 120.00119 * 54.25360 * 12 2 1 14 14 S 1.65601 * 119.99879 * 234.25192 * 12 2 1 15 15 O 1.42089 * 106.40512 * 208.60427 * 14 12 2 16 16 O 1.42104 * 106.40184 * 341.52468 * 14 12 2 17 17 N 1.65602 * 107.21785 * 95.05901 * 14 12 2 18 18 C 1.46506 * 119.99516 * 81.92623 * 17 14 12 19 19 C 1.46499 * 120.00597 * 261.92608 * 17 14 12 20 20 C 1.53004 * 109.47170 * 99.25605 * 19 17 14 21 21 C 1.52992 * 109.47130 * 183.93142 * 20 19 17 22 22 H 1.09001 * 109.46210 * 182.88220 * 21 20 19 23 23 C 1.53042 * 109.46561 * 62.89979 * 21 20 19 24 24 C 1.53116 * 109.27884 * 180.80458 * 23 21 20 25 25 C 1.53124 * 109.15914 * 57.65796 * 24 23 21 26 26 C 1.53037 * 109.27378 * 302.33884 * 25 24 23 27 27 N 1.46846 * 109.51383 * 59.19402 * 26 25 24 28 28 C 1.46907 * 110.99461 * 174.14740 * 27 26 25 29 29 H 1.09004 * 109.47005 * 303.86230 * 1 2 3 30 30 H 1.09003 * 109.47398 * 63.86232 * 1 2 3 31 31 H 1.08999 * 109.47342 * 183.86606 * 1 2 3 32 32 H 0.96996 * 119.99959 * 180.02562 * 7 6 4 33 33 H 1.09000 * 109.47267 * 89.99916 * 13 12 2 34 34 H 1.08997 * 109.47198 * 209.99483 * 13 12 2 35 35 H 1.09001 * 109.47472 * 329.99869 * 13 12 2 36 36 H 1.08992 * 109.47057 * 90.00106 * 18 17 14 37 37 H 1.09001 * 109.47011 * 210.00363 * 18 17 14 38 38 H 1.08998 * 109.46902 * 329.99736 * 18 17 14 39 39 H 1.08994 * 109.47218 * 219.26128 * 19 17 14 40 40 H 1.09004 * 109.46739 * 339.25864 * 19 17 14 41 41 H 1.08998 * 109.46883 * 303.93117 * 20 19 17 42 42 H 1.08997 * 109.46879 * 63.92617 * 20 19 17 43 43 H 1.09003 * 109.49808 * 300.74529 * 23 21 20 44 44 H 1.09001 * 109.49932 * 60.86007 * 23 21 20 45 45 H 1.09000 * 109.51970 * 177.55781 * 24 23 21 46 46 H 1.08995 * 109.52546 * 297.68919 * 24 23 21 47 47 H 1.08989 * 109.50822 * 62.28422 * 25 24 23 48 48 H 1.08998 * 109.50088 * 182.40415 * 25 24 23 49 49 H 1.09007 * 109.46129 * 179.19678 * 26 25 24 50 50 H 1.08997 * 109.46604 * 299.17279 * 26 25 24 51 51 H 1.08990 * 109.47134 * 189.63959 * 28 27 26 52 52 H 1.09002 * 109.46376 * 309.64099 * 28 27 26 53 53 H 1.08996 * 109.46970 * 69.63239 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6531 -1.5884 -1.1315 6 6 1.6992 -0.2393 -2.4827 7 7 2.1371 -0.8595 -3.5566 8 14 0.6257 1.2798 -2.6541 9 1 -0.8021 0.8745 -2.6992 10 1 0.8491 2.1774 -1.4922 11 1 0.9770 1.9955 -3.9070 12 7 2.0183 -0.6906 1.1961 13 6 1.5637 -2.0512 1.4933 14 16 3.0843 0.0667 2.2123 15 8 3.8578 -0.9590 2.8193 16 8 3.6559 1.1352 1.4702 17 7 2.1960 0.7621 3.4246 18 6 1.7548 -0.0450 4.5649 19 6 1.8514 2.1844 3.3570 20 6 0.4188 2.3381 2.8420 21 6 0.0924 3.8238 2.6783 22 1 -0.9443 3.9350 2.3605 23 6 1.0174 4.4360 1.6239 24 6 0.7007 5.9269 1.4779 25 6 0.8644 6.6110 2.8380 26 6 -0.0563 5.9358 3.8571 27 7 0.2874 4.5119 3.9608 28 6 -0.4822 3.8612 5.0297 29 1 -0.3633 0.5726 0.8534 30 1 -0.3634 0.4527 -0.9226 31 1 -0.3634 -1.0253 0.0693 32 1 1.9030 -0.5279 -4.4376 33 1 2.2373 -2.7695 1.0260 34 1 1.5599 -2.2054 2.5723 35 1 0.5558 -2.1910 1.1027 36 1 2.5118 -0.0114 5.3484 37 1 0.8157 0.3525 4.9497 38 1 1.6087 -1.0767 4.2448 39 1 1.9294 2.6249 4.3509 40 1 2.5375 2.6926 2.6794 41 1 0.3232 1.8368 1.8789 42 1 -0.2735 1.8903 3.5550 43 1 2.0549 4.3130 1.9346 44 1 0.8613 3.9354 0.6682 45 1 1.3862 6.3762 0.7593 46 1 -0.3246 6.0491 1.1288 47 1 1.8994 6.5223 3.1678 48 1 0.5990 7.6645 2.7498 49 1 0.0684 6.4112 4.8301 50 1 -1.0922 6.0368 3.5336 51 1 -0.0906 2.8585 5.2005 52 1 -0.3972 4.4456 5.9459 53 1 -1.5298 3.7970 4.7356 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330412666.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:54:42 Heat of formation + Delta-G solvation = -86.652153 kcal Electronic energy + Delta-G solvation = -32321.144499 eV Core-core repulsion = 28353.984151 eV Total energy + Delta-G solvation = -3967.160348 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.203 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.48152 -38.44949 -38.09775 -37.43020 -36.89957 -34.55309 -34.49426 -33.57983 -31.77766 -29.57619 -27.68989 -27.48148 -26.97618 -26.82694 -24.52727 -23.75101 -22.59150 -21.89087 -20.37660 -19.71803 -19.00025 -18.81742 -18.17060 -17.56430 -16.86316 -16.63323 -16.38146 -15.89512 -15.46971 -15.38898 -15.28724 -15.19388 -14.87434 -14.68877 -14.55301 -14.15692 -14.00203 -13.94449 -13.87831 -13.55917 -13.54895 -13.37089 -13.17501 -13.06095 -12.99734 -12.91077 -12.84951 -12.62022 -12.50974 -12.46439 -12.12748 -12.09379 -11.95939 -11.76203 -11.50395 -11.43813 -11.33899 -11.20209 -11.01264 -10.76064 -10.03397 -9.71680 -9.16537 -8.30695 -6.35687 -0.41320 1.27324 1.37198 1.45455 1.98978 2.30557 2.52959 2.99887 3.04099 3.32979 3.73006 3.79840 3.90309 3.97790 4.06643 4.13054 4.25884 4.33627 4.40921 4.47810 4.50513 4.58149 4.60973 4.62824 4.66756 4.69786 4.74261 4.75481 4.78415 4.82115 4.86350 4.89497 4.94838 5.00257 5.07657 5.09162 5.10510 5.11249 5.17906 5.24969 5.26255 5.34690 5.38129 5.47629 5.50409 5.64448 5.68298 5.91915 6.19534 6.25888 6.33644 6.68541 7.28903 8.86412 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010102 B = 0.005201 C = 0.003899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2771.155140 B = 5382.693295 C = 7179.462937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.248 3.752 3 H 0.043 0.957 4 C -0.528 4.528 5 H 0.035 0.965 6 C 0.015 3.985 7 N -0.946 5.946 8 Si 0.939 3.061 9 H -0.252 1.252 10 H -0.243 1.243 11 H -0.300 1.300 12 N -0.993 5.993 13 C 0.100 3.900 14 S 2.785 3.215 15 O -1.011 7.011 16 O -1.010 7.010 17 N -1.004 6.004 18 C 0.087 3.913 19 C 0.125 3.875 20 C -0.140 4.140 21 C 0.097 3.903 22 H 0.045 0.955 23 C -0.128 4.128 24 C -0.121 4.121 25 C -0.114 4.114 26 C 0.057 3.943 27 N -0.545 5.545 28 C 0.021 3.979 29 H 0.073 0.927 30 H 0.040 0.960 31 H 0.070 0.930 32 H 0.266 0.734 33 H 0.030 0.970 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.063 0.937 37 H 0.102 0.898 38 H 0.068 0.932 39 H 0.109 0.891 40 H 0.069 0.931 41 H 0.060 0.940 42 H 0.092 0.908 43 H 0.064 0.936 44 H 0.050 0.950 45 H 0.061 0.939 46 H 0.062 0.938 47 H 0.063 0.937 48 H 0.080 0.920 49 H 0.088 0.912 50 H 0.032 0.968 51 H 0.077 0.923 52 H 0.077 0.923 53 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.983 12.129 20.881 26.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.142 3.858 3 H 0.061 0.939 4 C -0.568 4.568 5 H 0.053 0.947 6 C -0.183 4.183 7 N -0.586 5.586 8 Si 0.765 3.235 9 H -0.178 1.178 10 H -0.167 1.167 11 H -0.228 1.228 12 N -0.833 5.833 13 C -0.046 4.046 14 S 2.795 3.205 15 O -0.994 6.994 16 O -0.994 6.994 17 N -0.846 5.846 18 C -0.057 4.057 19 C 0.000 4.000 20 C -0.179 4.179 21 C -0.012 4.012 22 H 0.063 0.937 23 C -0.166 4.166 24 C -0.159 4.159 25 C -0.151 4.151 26 C -0.070 4.070 27 N -0.270 5.270 28 C -0.127 4.127 29 H 0.092 0.908 30 H 0.058 0.942 31 H 0.089 0.911 32 H 0.075 0.925 33 H 0.049 0.951 34 H 0.104 0.896 35 H 0.105 0.895 36 H 0.082 0.918 37 H 0.120 0.880 38 H 0.087 0.913 39 H 0.127 0.873 40 H 0.088 0.912 41 H 0.078 0.922 42 H 0.111 0.889 43 H 0.082 0.918 44 H 0.068 0.932 45 H 0.080 0.920 46 H 0.080 0.920 47 H 0.082 0.918 48 H 0.099 0.901 49 H 0.106 0.894 50 H 0.051 0.949 51 H 0.096 0.904 52 H 0.096 0.904 53 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -9.524 12.087 20.782 25.859 hybrid contribution -1.066 0.109 -1.378 1.746 sum -10.590 12.196 19.403 25.246 Atomic orbital electron populations 1.22432 0.96156 1.02699 1.00333 1.18762 0.92489 0.92263 0.82282 0.93900 1.21520 1.31482 1.12963 0.90818 0.94686 1.25795 0.97397 0.99878 0.95217 1.70041 1.47475 1.42427 0.98625 0.86020 0.79628 0.80053 0.77817 1.17785 1.16666 1.22815 1.57460 1.64923 1.24784 1.36147 1.21445 1.01248 0.81371 1.00495 1.01600 0.73926 0.72307 0.72628 1.93509 1.68430 1.59509 1.78000 1.93517 1.76815 1.56977 1.72081 1.57775 1.72515 1.18587 1.35725 1.21729 1.01930 0.94380 0.87691 1.21459 0.95906 0.78495 1.04162 1.22242 0.97785 0.95531 1.02327 1.21466 0.97302 0.92762 0.89676 0.93694 1.21780 1.00353 0.96603 0.97858 1.21583 1.01541 0.94593 0.98173 1.21575 1.00442 0.99271 0.93852 1.22124 0.96918 0.87826 1.00163 1.61948 1.57315 1.02773 1.04994 1.22478 0.95268 1.00673 0.94239 0.90836 0.94173 0.91129 0.92451 0.95098 0.89568 0.89485 0.91834 0.87959 0.91288 0.87329 0.91234 0.92168 0.88926 0.91761 0.93157 0.91980 0.91955 0.91774 0.90110 0.89401 0.94939 0.90430 0.90389 0.95554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.88 8.58 71.98 0.62 -5.27 16 2 C 0.25 11.29 2.16 44.25 0.10 11.39 16 3 H 0.04 2.09 5.94 -2.39 -0.01 2.08 16 4 C -0.53 -30.23 9.05 25.60 0.23 -30.00 16 5 H 0.03 2.25 8.05 -2.91 -0.02 2.23 16 6 C 0.02 0.88 5.45 84.65 0.46 1.34 16 7 N -0.95 -59.46 13.96 21.45 0.30 -59.16 16 8 Si 0.94 43.85 24.40 68.60 1.67 45.53 16 9 H -0.25 -10.71 6.84 99.48 0.68 -10.03 16 10 H -0.24 -10.48 6.53 99.48 0.65 -9.83 16 11 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 12 N -0.99 -39.43 3.12 -520.47 -1.62 -41.06 16 13 C 0.10 3.32 9.79 127.77 1.25 4.57 16 14 S 2.79 108.25 5.96 -56.49 -0.34 107.91 16 15 O -1.01 -42.59 16.76 -128.00 -2.14 -44.73 16 16 O -1.01 -47.01 15.01 -128.00 -1.92 -48.94 16 17 N -1.00 -26.92 3.25 -539.12 -1.75 -28.68 16 18 C 0.09 1.60 10.31 127.77 1.32 2.92 16 19 C 0.12 3.06 5.10 86.38 0.44 3.50 16 20 C -0.14 -3.05 4.70 30.59 0.14 -2.90 16 21 C 0.10 2.02 2.12 44.94 0.10 2.12 16 22 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 23 C -0.13 -3.20 5.11 30.65 0.16 -3.04 16 24 C -0.12 -2.44 6.00 30.67 0.18 -2.26 16 25 C -0.11 -1.83 6.09 30.65 0.19 -1.65 16 26 C 0.06 0.85 5.46 86.33 0.47 1.32 16 27 N -0.54 -9.27 3.99 -897.16 -3.58 -12.85 16 28 C 0.02 0.26 8.71 127.69 1.11 1.38 16 29 H 0.07 2.18 5.80 -2.38 -0.01 2.17 16 30 H 0.04 1.58 3.22 -2.39 -0.01 1.58 16 31 H 0.07 2.47 6.32 -2.39 -0.02 2.45 16 32 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 33 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.09 2.19 6.48 -2.39 -0.02 2.17 16 35 H 0.09 2.62 6.07 -2.39 -0.01 2.61 16 36 H 0.06 1.08 8.14 -2.39 -0.02 1.07 16 37 H 0.10 1.19 7.86 -2.39 -0.02 1.17 16 38 H 0.07 1.24 6.55 -2.39 -0.02 1.22 16 39 H 0.11 2.18 6.93 -2.39 -0.02 2.17 16 40 H 0.07 2.12 4.94 -2.39 -0.01 2.11 16 41 H 0.06 1.59 5.68 -2.39 -0.01 1.57 16 42 H 0.09 1.54 6.41 -2.39 -0.02 1.52 16 43 H 0.06 1.78 6.38 -2.39 -0.02 1.77 16 44 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 45 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 46 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 47 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 48 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 49 H 0.09 1.05 8.02 -2.38 -0.02 1.03 16 50 H 0.03 0.48 8.14 -2.39 -0.02 0.46 16 51 H 0.08 0.90 5.98 -2.39 -0.01 0.88 16 52 H 0.08 0.79 7.99 -2.39 -0.02 0.77 16 53 H 0.03 0.32 8.13 -2.39 -0.02 0.30 16 Total: -1.00 -75.94 393.91 -1.81 -77.75 By element: Atomic # 1 Polarization: 20.02 SS G_CDS: 0.81 Total: 20.83 kcal Atomic # 6 Polarization: -23.36 SS G_CDS: 6.76 Total: -16.59 kcal Atomic # 7 Polarization: -135.09 SS G_CDS: -6.66 Total: -141.75 kcal Atomic # 8 Polarization: -89.60 SS G_CDS: -4.07 Total: -93.67 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 1.67 Total: 45.53 kcal Atomic # 16 Polarization: 108.25 SS G_CDS: -0.34 Total: 107.91 kcal Total: -75.94 -1.81 -77.75 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330412666.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.904 kcal (2) G-P(sol) polarization free energy of solvation -75.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds