Wall clock time and date at job start Wed Apr 1 2020 04:54:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.46866 * 2 1 4 4 C 1.50696 * 109.47382 * 119.99845 * 2 1 3 5 5 H 1.07998 * 119.99889 * 119.99905 * 4 2 1 6 6 C 1.37877 * 119.99984 * 300.00098 * 4 2 1 7 7 N 1.31516 * 120.00063 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00031 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47023 * 60.00209 * 8 6 4 10 10 H 1.48501 * 109.47023 * 180.02562 * 8 6 4 11 11 H 1.48499 * 109.47442 * 300.00520 * 8 6 4 12 12 N 1.46505 * 109.47360 * 240.00178 * 2 1 3 13 13 C 1.46496 * 119.99508 * 298.23449 * 12 2 1 14 14 S 1.65594 * 120.00200 * 118.23158 * 12 2 1 15 15 O 1.42108 * 106.40242 * 329.97486 * 14 12 2 16 16 O 1.42095 * 106.40427 * 197.05674 * 14 12 2 17 17 N 1.65601 * 107.21923 * 83.51222 * 14 12 2 18 18 C 1.46497 * 120.00118 * 275.38626 * 17 14 12 19 19 C 1.46499 * 119.99770 * 95.38138 * 17 14 12 20 20 C 1.52995 * 109.47496 * 264.44353 * 19 17 14 21 21 C 1.53005 * 109.47446 * 180.79030 * 20 19 17 22 22 H 1.09001 * 109.45996 * 303.39869 * 21 20 19 23 23 C 1.53036 * 109.46345 * 63.37694 * 21 20 19 24 24 C 1.53110 * 109.27760 * 179.19413 * 23 21 20 25 25 C 1.53113 * 109.16620 * 302.34806 * 24 23 21 26 26 C 1.53040 * 109.27648 * 57.65474 * 25 24 23 27 27 N 1.46848 * 109.46079 * 183.43362 * 21 20 19 28 28 C 1.46900 * 111.00019 * 54.14420 * 27 21 20 29 29 H 1.09000 * 109.46840 * 186.73966 * 1 2 3 30 30 H 1.09003 * 109.47439 * 306.74049 * 1 2 3 31 31 H 1.09002 * 109.47374 * 66.73941 * 1 2 3 32 32 H 0.97003 * 120.00313 * 179.97438 * 7 6 4 33 33 H 1.09002 * 109.46884 * 269.99911 * 13 12 2 34 34 H 1.08996 * 109.47431 * 29.99821 * 13 12 2 35 35 H 1.08999 * 109.47442 * 149.99999 * 13 12 2 36 36 H 1.09001 * 109.46578 * 269.99406 * 18 17 14 37 37 H 1.08994 * 109.47442 * 29.99968 * 18 17 14 38 38 H 1.09003 * 109.46709 * 150.00168 * 18 17 14 39 39 H 1.09010 * 109.47391 * 24.44273 * 19 17 14 40 40 H 1.08997 * 109.47139 * 144.44034 * 19 17 14 41 41 H 1.09006 * 109.46955 * 300.79031 * 20 19 17 42 42 H 1.09006 * 109.47334 * 60.78489 * 20 19 17 43 43 H 1.08998 * 109.50118 * 299.14352 * 23 21 20 44 44 H 1.09003 * 109.50193 * 59.21408 * 23 21 20 45 45 H 1.09005 * 109.52428 * 62.25609 * 24 23 21 46 46 H 1.09003 * 109.52539 * 182.37714 * 24 23 21 47 47 H 1.08997 * 109.50977 * 177.59461 * 25 24 23 48 48 H 1.08998 * 109.50515 * 297.67270 * 25 24 23 49 49 H 1.09000 * 109.46634 * 60.83548 * 26 25 24 50 50 H 1.09001 * 109.46386 * 180.80597 * 26 25 24 51 51 H 1.09004 * 109.47300 * 52.23319 * 28 27 21 52 52 H 1.09005 * 109.46944 * 172.22787 * 28 27 21 53 53 H 1.09000 * 109.46775 * 292.22731 * 28 27 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2304 5 1 2.6533 -1.5884 1.1313 6 6 1.6993 -0.2393 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3215 -1.1202 4.0079 9 1 3.8064 -1.1207 4.0081 10 1 1.8260 -0.4204 5.2204 11 1 1.8261 -2.5201 4.0078 12 7 2.0184 -0.6906 -1.1962 13 6 1.6967 -2.1039 -1.4086 14 16 2.9340 0.1264 -2.3081 15 8 2.5117 1.4823 -2.2572 16 8 2.9094 -0.6511 -3.4973 17 7 4.4988 0.1034 -1.7666 18 6 4.9559 1.1093 -0.8047 19 6 5.4259 -0.9230 -2.2495 20 6 5.4627 -2.0854 -1.2554 21 6 6.4459 -3.1485 -1.7499 22 1 6.1590 -3.4709 -2.7508 23 6 7.8575 -2.5587 -1.7890 24 6 8.8405 -3.6317 -2.2650 25 6 8.7592 -4.8395 -1.3275 26 6 7.3214 -5.3631 -1.3018 27 7 6.4201 -4.3001 -0.8390 28 6 5.0517 -4.8067 -0.6695 29 1 -0.3633 -1.0206 0.1206 30 1 -0.3634 0.6147 0.8235 31 1 -0.3634 0.4058 -0.9441 32 1 0.7081 1.1609 3.4844 33 1 2.4705 -2.7245 -0.9568 34 1 0.7347 -2.3307 -0.9490 35 1 1.6455 -2.3082 -2.4781 36 1 5.3466 1.9739 -1.3413 37 1 4.1200 1.4183 -0.1772 38 1 5.7414 0.6840 -0.1800 39 1 5.0917 -1.2865 -3.2213 40 1 6.4238 -0.4951 -2.3452 41 1 5.7836 -1.7194 -0.2801 42 1 4.4677 -2.5223 -1.1702 43 1 7.8798 -1.7136 -2.4770 44 1 8.1394 -2.2230 -0.7910 45 1 8.5818 -3.9391 -3.2783 46 1 9.8532 -3.2285 -2.2542 47 1 9.4258 -5.6239 -1.6857 48 1 9.0563 -4.5406 -0.3223 49 1 7.0304 -5.6749 -2.3048 50 1 7.2570 -6.2144 -0.6240 51 1 4.6074 -4.9877 -1.6483 52 1 5.0767 -5.7383 -0.1040 53 1 4.4559 -4.0703 -0.1304 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330412669.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:54:45 Heat of formation + Delta-G solvation = -96.202637 kcal Electronic energy + Delta-G solvation = -31921.557868 eV Core-core repulsion = 27953.983380 eV Total energy + Delta-G solvation = -3967.574488 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.203 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.35475 -38.41532 -37.90137 -37.50204 -36.91948 -34.51713 -34.44135 -33.62173 -30.93013 -29.70688 -27.65778 -27.25428 -27.03329 -26.75658 -24.66488 -23.49360 -22.55445 -21.77147 -20.56222 -19.83772 -18.74716 -18.42572 -18.32450 -17.38518 -16.87591 -16.44752 -16.24920 -15.84184 -15.47866 -15.37740 -15.12742 -14.99004 -14.92084 -14.73980 -14.50206 -14.22516 -13.86531 -13.66653 -13.56964 -13.47487 -13.27416 -13.19714 -13.12234 -12.99573 -12.92631 -12.83431 -12.76086 -12.66352 -12.56203 -12.44829 -12.24818 -12.15887 -12.00834 -11.85971 -11.68528 -11.55038 -11.25067 -11.12157 -10.96375 -10.48307 -9.99041 -9.63261 -9.21478 -8.06730 -6.19919 -0.32849 1.47039 1.48294 1.54754 1.94852 2.46829 2.53794 2.96833 3.22411 3.36739 3.72018 3.86507 3.93247 4.03790 4.11367 4.19624 4.31209 4.35377 4.40752 4.47717 4.57293 4.58262 4.64368 4.68990 4.70277 4.71910 4.75602 4.82705 4.88888 4.93332 4.94390 4.97882 5.03895 5.07109 5.10467 5.14066 5.14520 5.18127 5.22882 5.30245 5.35335 5.39587 5.54936 5.57274 5.66014 5.78640 5.88160 6.10878 6.17131 6.25808 6.31333 6.88614 7.49543 8.98084 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010120 B = 0.004521 C = 0.003660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2766.011346 B = 6191.608371 C = 7647.792281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.278 3.722 3 H 0.023 0.977 4 C -0.520 4.520 5 H 0.066 0.934 6 C 0.022 3.978 7 N -0.917 5.917 8 Si 0.952 3.048 9 H -0.272 1.272 10 H -0.290 1.290 11 H -0.273 1.273 12 N -0.996 5.996 13 C 0.099 3.901 14 S 2.789 3.211 15 O -1.016 7.016 16 O -1.004 7.004 17 N -1.003 6.003 18 C 0.097 3.903 19 C 0.118 3.882 20 C -0.133 4.133 21 C 0.093 3.907 22 H 0.040 0.960 23 C -0.114 4.114 24 C -0.120 4.120 25 C -0.114 4.114 26 C 0.054 3.946 27 N -0.550 5.550 28 C 0.022 3.978 29 H 0.042 0.958 30 H 0.066 0.934 31 H 0.019 0.981 32 H 0.262 0.738 33 H 0.054 0.946 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.068 0.932 37 H 0.048 0.952 38 H 0.090 0.910 39 H 0.084 0.916 40 H 0.108 0.892 41 H 0.068 0.932 42 H 0.057 0.943 43 H 0.081 0.919 44 H 0.065 0.935 45 H 0.061 0.939 46 H 0.075 0.925 47 H 0.080 0.920 48 H 0.063 0.937 49 H 0.031 0.969 50 H 0.077 0.923 51 H 0.027 0.973 52 H 0.074 0.926 53 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.935 -10.358 -8.128 19.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.174 3.826 3 H 0.041 0.959 4 C -0.559 4.559 5 H 0.084 0.916 6 C -0.178 4.178 7 N -0.556 5.556 8 Si 0.778 3.222 9 H -0.197 1.197 10 H -0.216 1.216 11 H -0.198 1.198 12 N -0.837 5.837 13 C -0.046 4.046 14 S 2.799 3.201 15 O -1.000 7.000 16 O -0.988 6.988 17 N -0.843 5.843 18 C -0.048 4.048 19 C -0.008 4.008 20 C -0.173 4.173 21 C -0.016 4.016 22 H 0.058 0.942 23 C -0.152 4.152 24 C -0.157 4.157 25 C -0.152 4.152 26 C -0.074 4.074 27 N -0.275 5.275 28 C -0.126 4.126 29 H 0.061 0.939 30 H 0.085 0.915 31 H 0.038 0.962 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.086 0.914 37 H 0.067 0.933 38 H 0.109 0.891 39 H 0.102 0.898 40 H 0.126 0.874 41 H 0.087 0.913 42 H 0.075 0.925 43 H 0.099 0.901 44 H 0.084 0.916 45 H 0.080 0.920 46 H 0.094 0.906 47 H 0.099 0.901 48 H 0.081 0.919 49 H 0.050 0.950 50 H 0.096 0.904 51 H 0.046 0.954 52 H 0.093 0.907 53 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 14.717 -9.664 -8.349 19.486 hybrid contribution -0.515 -0.575 0.774 1.093 sum 14.202 -10.240 -7.575 19.077 Atomic orbital electron populations 1.21945 0.98177 1.00522 0.99060 1.18360 0.91696 0.91043 0.81501 0.95950 1.21477 1.31285 1.12831 0.90337 0.91617 1.25579 0.95214 0.95522 1.01474 1.70016 1.37421 1.23957 1.24240 0.85714 0.78794 0.78692 0.78993 1.19703 1.21630 1.19837 1.57643 1.66803 1.21210 1.38088 1.21382 1.02093 0.80270 1.00876 1.01463 0.73186 0.72485 0.72976 1.93533 1.81851 1.37059 1.87551 1.93478 1.87211 1.72081 1.46018 1.57650 1.28029 1.39979 1.58634 1.21495 1.01107 0.90561 0.91644 1.21553 0.94986 0.87348 0.96897 1.22124 0.99527 0.95552 1.00071 1.21556 0.96122 0.90525 0.93410 0.94222 1.21718 0.92751 0.98438 1.02249 1.21584 0.99675 0.95592 0.98868 1.21580 0.95120 0.98173 1.00346 1.22165 0.93243 0.93475 0.98487 1.61923 1.08612 1.07897 1.49062 1.22406 0.89382 1.00671 1.00185 0.93860 0.91476 0.96224 0.92835 0.92772 0.90807 0.90874 0.91379 0.93284 0.89091 0.89761 0.87382 0.91289 0.92466 0.90101 0.91626 0.92023 0.90592 0.90140 0.91867 0.95033 0.90421 0.95415 0.90729 0.92114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.59 8.74 71.98 0.63 -5.96 16 2 C 0.28 13.46 2.58 44.24 0.11 13.58 16 3 H 0.02 1.23 6.63 -2.39 -0.02 1.22 16 4 C -0.52 -25.88 8.34 25.60 0.21 -25.67 16 5 H 0.07 3.17 7.54 -2.91 -0.02 3.15 16 6 C 0.02 1.13 5.30 84.65 0.45 1.58 16 7 N -0.92 -50.18 11.40 21.45 0.24 -49.93 16 8 Si 0.95 41.24 29.54 68.60 2.03 43.27 16 9 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 10 H -0.29 -12.64 7.11 99.48 0.71 -11.93 16 11 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 12 N -1.00 -40.93 3.12 -520.45 -1.62 -42.56 16 13 C 0.10 3.46 9.76 127.77 1.25 4.70 16 14 S 2.79 110.71 6.01 -56.49 -0.34 110.37 16 15 O -1.02 -47.58 16.21 -128.00 -2.07 -49.66 16 16 O -1.00 -39.91 15.10 -128.00 -1.93 -41.85 16 17 N -1.00 -32.19 3.24 -539.14 -1.75 -33.93 16 18 C 0.10 2.96 10.32 127.77 1.32 4.28 16 19 C 0.12 2.98 5.39 86.38 0.47 3.44 16 20 C -0.13 -3.42 4.71 30.59 0.14 -3.27 16 21 C 0.09 1.99 1.91 44.94 0.09 2.08 16 22 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 23 C -0.11 -1.98 5.07 30.64 0.16 -1.82 16 24 C -0.12 -1.72 6.00 30.67 0.18 -1.54 16 25 C -0.11 -1.70 6.09 30.65 0.19 -1.51 16 26 C 0.05 0.95 5.46 86.33 0.47 1.42 16 27 N -0.55 -12.18 4.75 -897.13 -4.26 -16.44 16 28 C 0.02 0.49 8.86 127.69 1.13 1.62 16 29 H 0.04 1.94 7.00 -2.39 -0.02 1.92 16 30 H 0.07 3.52 6.28 -2.39 -0.01 3.50 16 31 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.26 13.82 8.31 -92.71 -0.77 13.05 16 33 H 0.05 1.73 6.67 -2.39 -0.02 1.72 16 34 H 0.07 2.56 6.66 -2.39 -0.02 2.54 16 35 H 0.07 2.33 7.00 -2.39 -0.02 2.31 16 36 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.05 1.82 7.43 -2.39 -0.02 1.80 16 38 H 0.09 2.31 8.07 -2.39 -0.02 2.30 16 39 H 0.08 2.19 6.86 -2.38 -0.02 2.17 16 40 H 0.11 2.09 6.47 -2.39 -0.02 2.08 16 41 H 0.07 1.93 8.14 -2.38 -0.02 1.91 16 42 H 0.06 1.65 4.85 -2.38 -0.01 1.64 16 43 H 0.08 1.20 6.54 -2.39 -0.02 1.19 16 44 H 0.06 1.25 8.14 -2.39 -0.02 1.24 16 45 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 46 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 47 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 48 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 49 H 0.03 0.55 8.14 -2.39 -0.02 0.53 16 50 H 0.08 1.27 7.99 -2.39 -0.02 1.25 16 51 H 0.03 0.60 8.10 -2.38 -0.02 0.58 16 52 H 0.07 1.49 7.95 -2.38 -0.02 1.47 16 53 H 0.06 1.59 6.62 -2.39 -0.02 1.58 16 Total: -1.00 -63.06 407.63 -2.04 -65.10 By element: Atomic # 1 Polarization: 21.83 SS G_CDS: 0.87 Total: 22.70 kcal Atomic # 6 Polarization: -13.86 SS G_CDS: 6.79 Total: -7.07 kcal Atomic # 7 Polarization: -135.48 SS G_CDS: -7.39 Total: -142.87 kcal Atomic # 8 Polarization: -87.49 SS G_CDS: -4.01 Total: -91.50 kcal Atomic # 14 Polarization: 41.24 SS G_CDS: 2.03 Total: 43.27 kcal Atomic # 16 Polarization: 110.71 SS G_CDS: -0.34 Total: 110.37 kcal Total: -63.06 -2.04 -65.10 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330412669.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.102 kcal (2) G-P(sol) polarization free energy of solvation -63.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds