Wall clock time and date at job start Wed Apr 1 2020 04:55:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47368 * 2 1 4 4 C 1.50700 * 109.47106 * 240.00482 * 2 1 3 5 5 H 1.07999 * 120.00552 * 239.99578 * 4 2 1 6 6 C 1.37879 * 119.99967 * 60.00074 * 4 2 1 7 7 N 1.31518 * 119.99752 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00084 * 179.97438 * 6 4 2 9 9 H 1.48493 * 109.47147 * 0.02562 * 8 6 4 10 10 H 1.48508 * 109.46855 * 119.99905 * 8 6 4 11 11 H 1.48498 * 109.47151 * 239.99620 * 8 6 4 12 12 N 1.46502 * 109.47349 * 120.00625 * 2 1 3 13 13 C 1.46499 * 120.00062 * 60.00143 * 12 2 1 14 14 S 1.65606 * 119.99935 * 239.99645 * 12 2 1 15 15 O 1.42098 * 106.40010 * 23.54321 * 14 12 2 16 16 O 1.42094 * 106.39890 * 156.45686 * 14 12 2 17 17 N 1.65596 * 107.21969 * 270.00204 * 14 12 2 18 18 C 1.46502 * 119.99713 * 269.99848 * 17 14 12 19 19 C 1.46495 * 120.00156 * 89.99975 * 17 14 12 20 20 H 1.08999 * 109.47087 * 0.02562 * 19 17 14 21 21 C 1.52996 * 109.47561 * 239.99955 * 19 17 14 22 22 C 1.53007 * 109.47118 * 119.99741 * 19 17 14 23 23 C 1.53116 * 109.52189 * 299.68422 * 22 19 17 24 24 C 1.53038 * 109.27686 * 182.44151 * 23 22 19 25 25 N 1.46842 * 109.52449 * 59.17931 * 24 23 22 26 26 C 1.46900 * 110.99890 * 174.16203 * 25 24 23 27 27 C 1.46846 * 111.19734 * 298.25765 * 25 24 23 28 28 C 1.53032 * 109.52306 * 61.74501 * 27 25 24 29 29 H 1.08998 * 109.47159 * 59.99687 * 1 2 3 30 30 H 1.09003 * 109.46919 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47154 * 299.98961 * 1 2 3 32 32 H 0.97008 * 119.99487 * 180.02562 * 7 6 4 33 33 H 1.09002 * 109.47391 * 89.99876 * 13 12 2 34 34 H 1.09001 * 109.46813 * 329.99933 * 13 12 2 35 35 H 1.09004 * 109.47041 * 210.00060 * 13 12 2 36 36 H 1.08998 * 109.47106 * 90.00485 * 18 17 14 37 37 H 1.09002 * 109.46786 * 210.00192 * 18 17 14 38 38 H 1.09002 * 109.47162 * 330.00305 * 18 17 14 39 39 H 1.08999 * 109.47051 * 300.00182 * 21 19 17 40 40 H 1.09007 * 109.46939 * 59.99579 * 21 19 17 41 41 H 1.08995 * 109.47823 * 179.97438 * 21 19 17 42 42 H 1.08993 * 109.51943 * 59.87429 * 22 19 17 43 43 H 1.08999 * 109.50732 * 302.38007 * 23 22 19 44 44 H 1.08998 * 109.50313 * 62.49943 * 23 22 19 45 45 H 1.09004 * 109.46238 * 299.15927 * 24 23 22 46 46 H 1.09000 * 109.46494 * 179.19631 * 24 23 22 47 47 H 1.09006 * 109.47330 * 184.21029 * 26 25 24 48 48 H 1.08995 * 109.47528 * 304.20894 * 26 25 24 49 49 H 1.09005 * 109.47482 * 64.21165 * 26 25 24 50 50 H 1.09004 * 109.46411 * 301.72581 * 27 25 24 51 51 H 1.09006 * 109.46540 * 181.75806 * 27 25 24 52 52 H 1.09000 * 109.50748 * 180.88109 * 28 27 25 53 53 H 1.08992 * 109.53890 * 60.77927 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1316 6 6 1.6992 -0.2391 -2.4828 7 7 0.9427 0.8299 -2.6033 8 14 2.3224 -1.1191 -4.0081 9 1 3.1473 -2.2859 -3.6041 10 1 1.1676 -1.5861 -4.8167 11 1 3.1471 -0.1853 -4.8161 12 7 2.0183 -0.6907 1.1961 13 6 1.6645 -2.0933 1.4278 14 16 2.9705 0.1140 2.2862 15 8 2.6904 1.4970 2.1194 16 8 2.8229 -0.5649 3.5257 17 7 4.5438 -0.1044 1.8179 18 6 5.3070 -1.2476 2.3247 19 6 5.1725 0.8457 0.8968 20 1 4.4558 1.6228 0.6313 21 6 5.6198 0.1101 -0.3679 22 6 6.3880 1.4832 1.5729 23 6 5.9406 2.2264 2.8346 24 6 7.1506 2.9125 3.4727 25 7 7.7440 3.8528 2.5136 26 6 8.8229 4.6304 3.1375 27 6 8.2240 3.1553 1.3138 28 6 7.0461 2.4765 0.6112 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8901 32 1 0.7080 1.1612 -3.4843 33 1 2.4158 -2.7378 0.9713 34 1 0.6905 -2.3003 0.9844 35 1 1.6239 -2.2855 2.5000 36 1 5.1803 -2.0959 1.6520 37 1 6.3629 -0.9832 2.3811 38 1 4.9455 -1.5142 3.3178 39 1 6.3366 -0.6668 -0.1021 40 1 4.7538 -0.3441 -0.8496 41 1 6.0871 0.8170 -1.0534 42 1 7.1044 0.7068 1.8412 43 1 5.1948 2.9761 2.5702 44 1 5.5097 1.5172 3.5412 45 1 7.8900 2.1610 3.7496 46 1 6.8329 3.4545 4.3635 47 1 9.1946 5.3701 2.4284 48 1 8.4403 5.1368 4.0236 49 1 9.6346 3.9613 3.4234 50 1 8.9584 2.4026 1.6007 51 1 8.6860 3.8735 0.6364 52 1 7.4050 1.9459 -0.2706 53 1 6.3175 3.2296 0.3112 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337739456.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:55:21 Heat of formation + Delta-G solvation = -93.293907 kcal Electronic energy + Delta-G solvation = -32192.286011 eV Core-core repulsion = 28224.837655 eV Total energy + Delta-G solvation = -3967.448356 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.203 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.47822 -38.38920 -37.94582 -37.86128 -36.88303 -34.47509 -34.25550 -32.00735 -30.94419 -30.83408 -27.48081 -27.41187 -27.13271 -26.86075 -24.35364 -23.84941 -22.57971 -21.78798 -20.55562 -19.75176 -18.78118 -18.41534 -18.28443 -17.34333 -16.81194 -16.59812 -16.01461 -15.83335 -15.57402 -15.30344 -15.14038 -14.90918 -14.79314 -14.60337 -14.46337 -14.10436 -13.72832 -13.57097 -13.56687 -13.43581 -13.31437 -13.26409 -13.18823 -12.92510 -12.89610 -12.81089 -12.75033 -12.61182 -12.37372 -12.35040 -12.21835 -12.17608 -12.12184 -12.05602 -11.83601 -11.44174 -11.31125 -11.21770 -11.06996 -10.47356 -9.90110 -9.59099 -9.22099 -8.05342 -6.19066 -0.29527 1.45067 1.48662 1.57941 2.00676 2.47371 2.56923 3.03733 3.23400 3.38106 3.62764 3.82497 3.88269 4.06498 4.17278 4.22475 4.34895 4.36750 4.38866 4.55416 4.59909 4.62509 4.65886 4.71730 4.73643 4.76899 4.79956 4.83261 4.89033 4.93026 4.94696 4.99211 5.02013 5.03561 5.04641 5.07595 5.15511 5.16855 5.18485 5.25783 5.32189 5.54792 5.60598 5.60950 5.68976 5.82855 5.92709 6.13588 6.16424 6.20663 6.32759 6.89656 7.50091 8.99557 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012124 B = 0.004301 C = 0.003632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2308.918675 B = 6508.449561 C = 7708.329617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.276 3.724 3 H 0.022 0.978 4 C -0.517 4.517 5 H 0.068 0.932 6 C 0.020 3.980 7 N -0.918 5.918 8 Si 0.953 3.047 9 H -0.262 1.262 10 H -0.287 1.287 11 H -0.284 1.284 12 N -1.000 6.000 13 C 0.096 3.904 14 S 2.786 3.214 15 O -1.012 7.012 16 O -1.008 7.008 17 N -0.996 5.996 18 C 0.082 3.918 19 C 0.157 3.843 20 H 0.063 0.937 21 C -0.159 4.159 22 C -0.083 4.083 23 C -0.116 4.116 24 C 0.064 3.936 25 N -0.565 5.565 26 C 0.027 3.973 27 C 0.062 3.938 28 C -0.112 4.112 29 H 0.071 0.929 30 H 0.045 0.955 31 H 0.015 0.985 32 H 0.262 0.738 33 H 0.058 0.942 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.062 0.938 37 H 0.097 0.903 38 H 0.074 0.926 39 H 0.077 0.923 40 H 0.050 0.950 41 H 0.073 0.927 42 H 0.093 0.907 43 H 0.047 0.953 44 H 0.054 0.946 45 H 0.045 0.955 46 H 0.074 0.926 47 H 0.075 0.925 48 H 0.069 0.931 49 H 0.032 0.968 50 H 0.044 0.956 51 H 0.084 0.916 52 H 0.089 0.911 53 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.413 -1.356 8.152 18.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.172 3.828 3 H 0.039 0.961 4 C -0.556 4.556 5 H 0.086 0.914 6 C -0.180 4.180 7 N -0.558 5.558 8 Si 0.779 3.221 9 H -0.186 1.186 10 H -0.213 1.213 11 H -0.210 1.210 12 N -0.841 5.841 13 C -0.050 4.050 14 S 2.797 3.203 15 O -0.997 6.997 16 O -0.992 6.992 17 N -0.836 5.836 18 C -0.062 4.062 19 C 0.051 3.949 20 H 0.081 0.919 21 C -0.217 4.217 22 C -0.103 4.103 23 C -0.154 4.154 24 C -0.064 4.064 25 N -0.291 5.291 26 C -0.121 4.121 27 C -0.066 4.066 28 C -0.151 4.151 29 H 0.089 0.911 30 H 0.064 0.936 31 H 0.034 0.966 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.080 0.920 37 H 0.115 0.885 38 H 0.093 0.907 39 H 0.096 0.904 40 H 0.069 0.931 41 H 0.092 0.908 42 H 0.111 0.889 43 H 0.066 0.934 44 H 0.073 0.927 45 H 0.063 0.937 46 H 0.092 0.908 47 H 0.093 0.907 48 H 0.088 0.912 49 H 0.050 0.950 50 H 0.062 0.938 51 H 0.102 0.898 52 H 0.107 0.893 53 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 15.663 -0.455 8.669 17.908 hybrid contribution 0.213 -0.810 -1.032 1.329 sum 15.876 -1.265 7.637 17.663 Atomic orbital electron populations 1.21981 0.98307 1.00018 0.99857 1.18352 0.91611 0.91237 0.81583 0.96053 1.21545 1.31065 1.12708 0.90284 0.91405 1.25619 0.95253 0.95517 1.01596 1.70030 1.37592 1.24089 1.24077 0.85590 0.78029 0.78806 0.79686 1.18627 1.21305 1.20994 1.57673 1.65398 1.22376 1.38630 1.21409 1.02167 0.80567 1.00810 1.01477 0.73338 0.72540 0.72904 1.93529 1.84691 1.34323 1.87108 1.93478 1.86607 1.76373 1.42776 1.57674 1.29155 1.36349 1.60467 1.21673 0.98335 0.87072 0.99140 1.20852 0.94999 0.89819 0.89231 0.91917 1.22164 1.02096 1.01111 0.96371 1.21455 0.96220 0.97505 0.95101 1.21614 0.97848 0.98678 0.97259 1.22003 0.95544 0.94188 0.94627 1.61880 1.32873 1.26838 1.07490 1.22367 0.92165 0.97569 0.99951 1.22080 0.95673 0.96991 0.91831 1.21696 0.97539 0.97695 0.98156 0.91058 0.93611 0.96580 0.92891 0.92352 0.90881 0.90840 0.91953 0.88464 0.90749 0.90444 0.93090 0.90812 0.88887 0.93404 0.92717 0.93703 0.90751 0.90670 0.91241 0.94966 0.93802 0.89775 0.89278 0.92832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.91 8.95 71.98 0.64 -6.26 16 2 C 0.28 13.61 2.62 44.24 0.12 13.73 16 3 H 0.02 1.22 6.91 -2.39 -0.02 1.20 16 4 C -0.52 -25.77 7.81 25.60 0.20 -25.57 16 5 H 0.07 3.26 7.65 -2.91 -0.02 3.24 16 6 C 0.02 1.01 5.30 84.65 0.45 1.46 16 7 N -0.92 -50.64 11.32 21.45 0.24 -50.39 16 8 Si 0.95 40.78 29.54 68.60 2.03 42.81 16 9 H -0.26 -10.65 7.11 99.48 0.71 -9.95 16 10 H -0.29 -12.32 7.11 99.48 0.71 -11.62 16 11 H -0.28 -12.09 7.11 99.48 0.71 -11.39 16 12 N -1.00 -41.72 3.12 -520.44 -1.62 -43.35 16 13 C 0.10 3.34 9.90 127.77 1.27 4.60 16 14 S 2.79 112.02 6.10 -56.49 -0.34 111.67 16 15 O -1.01 -48.10 15.27 -128.00 -1.95 -50.06 16 16 O -1.01 -41.03 15.34 -128.00 -1.96 -42.99 16 17 N -1.00 -31.48 2.43 -516.52 -1.26 -32.73 16 18 C 0.08 1.93 9.72 127.77 1.24 3.17 16 19 C 0.16 4.86 2.21 44.99 0.10 4.96 16 20 H 0.06 2.45 6.91 -2.39 -0.02 2.43 16 21 C -0.16 -4.50 8.84 71.98 0.64 -3.87 16 22 C -0.08 -2.02 1.68 -10.71 -0.02 -2.04 16 23 C -0.12 -3.18 5.18 30.65 0.16 -3.02 16 24 C 0.06 1.41 5.46 86.33 0.47 1.88 16 25 N -0.57 -12.11 4.91 -922.59 -4.53 -16.64 16 26 C 0.03 0.43 9.59 127.69 1.22 1.66 16 27 C 0.06 1.17 5.46 86.32 0.47 1.64 16 28 C -0.11 -2.51 4.95 30.65 0.15 -2.36 16 29 H 0.07 3.80 6.07 -2.39 -0.01 3.78 16 30 H 0.04 2.04 6.66 -2.39 -0.02 2.03 16 31 H 0.02 0.71 8.14 -2.39 -0.02 0.70 16 32 H 0.26 13.80 8.31 -92.70 -0.77 13.03 16 33 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.07 2.54 6.43 -2.39 -0.02 2.52 16 35 H 0.07 2.33 7.02 -2.38 -0.02 2.31 16 36 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.10 1.71 6.43 -2.39 -0.02 1.70 16 38 H 0.07 1.77 7.02 -2.39 -0.02 1.75 16 39 H 0.08 1.74 7.67 -2.39 -0.02 1.73 16 40 H 0.05 1.80 7.57 -2.38 -0.02 1.78 16 41 H 0.07 1.89 6.49 -2.39 -0.02 1.88 16 42 H 0.09 1.86 6.66 -2.39 -0.02 1.84 16 43 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 44 H 0.05 1.55 7.70 -2.39 -0.02 1.53 16 45 H 0.04 0.85 8.14 -2.38 -0.02 0.83 16 46 H 0.07 1.58 8.09 -2.39 -0.02 1.56 16 47 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 48 H 0.07 1.05 8.09 -2.39 -0.02 1.03 16 49 H 0.03 0.45 8.14 -2.38 -0.02 0.43 16 50 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 51 H 0.08 1.41 8.12 -2.38 -0.02 1.39 16 52 H 0.09 1.69 6.58 -2.39 -0.02 1.68 16 53 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 Total: -1.00 -64.97 406.70 -1.43 -66.39 By element: Atomic # 1 Polarization: 24.44 SS G_CDS: 0.87 Total: 25.31 kcal Atomic # 6 Polarization: -17.13 SS G_CDS: 7.11 Total: -10.02 kcal Atomic # 7 Polarization: -135.94 SS G_CDS: -7.17 Total: -143.11 kcal Atomic # 8 Polarization: -89.13 SS G_CDS: -3.92 Total: -93.05 kcal Atomic # 14 Polarization: 40.78 SS G_CDS: 2.03 Total: 42.81 kcal Atomic # 16 Polarization: 112.02 SS G_CDS: -0.34 Total: 111.67 kcal Total: -64.97 -1.43 -66.39 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337739456.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.899 kcal (2) G-P(sol) polarization free energy of solvation -64.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds