Wall clock time and date at job start Wed Apr 1 2020 04:54:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09007 * 109.47278 * 2 1 4 4 C 1.50702 * 109.47426 * 240.00371 * 2 1 3 5 5 H 1.08000 * 119.99724 * 246.11792 * 4 2 1 6 6 C 1.37870 * 119.99884 * 66.11151 * 4 2 1 7 7 N 1.31517 * 119.99995 * 195.50537 * 6 4 2 8 8 Si 1.86804 * 120.00408 * 15.78348 * 6 4 2 9 9 H 1.48500 * 109.47274 * 179.72239 * 8 6 4 10 10 H 1.48497 * 109.46903 * 299.72404 * 8 6 4 11 11 H 1.48497 * 109.46953 * 59.72278 * 8 6 4 12 12 N 1.46494 * 109.47210 * 119.99879 * 2 1 3 13 13 C 1.46497 * 120.00304 * 60.00408 * 12 2 1 14 14 S 1.65602 * 120.00327 * 239.99993 * 12 2 1 15 15 O 1.42096 * 106.40576 * 203.54412 * 14 12 2 16 16 O 1.42107 * 106.40169 * 336.46349 * 14 12 2 17 17 N 1.65597 * 107.21707 * 89.99783 * 14 12 2 18 18 C 1.46504 * 119.99729 * 65.00733 * 17 14 12 19 19 C 1.53004 * 109.47246 * 164.99671 * 18 17 14 20 20 C 1.52999 * 109.47147 * 300.00164 * 19 18 17 21 21 C 1.53003 * 109.46984 * 59.99930 * 19 18 17 22 22 C 1.52992 * 109.47173 * 179.97438 * 19 18 17 23 23 N 1.46897 * 109.47436 * 172.02644 * 22 19 18 24 24 C 1.48535 * 110.99831 * 58.54632 * 23 22 19 25 25 C 1.54938 * 103.22829 * 159.72435 * 24 23 22 26 26 C 1.54598 * 102.91894 * 322.58605 * 25 24 23 27 27 C 1.47906 * 111.00239 * 175.94246 * 23 22 19 28 28 H 1.09001 * 109.47266 * 174.36367 * 1 2 3 29 29 H 1.09002 * 109.47682 * 294.36367 * 1 2 3 30 30 H 1.08997 * 109.47431 * 54.36230 * 1 2 3 31 31 H 0.97001 * 119.99700 * 355.22696 * 7 6 4 32 32 H 1.08999 * 109.47304 * 89.99562 * 13 12 2 33 33 H 1.08999 * 109.47350 * 210.00286 * 13 12 2 34 34 H 1.09004 * 109.46430 * 329.99928 * 13 12 2 35 35 H 0.97003 * 120.00717 * 244.99947 * 17 14 12 36 36 H 1.09003 * 109.46678 * 284.99657 * 18 17 14 37 37 H 1.08995 * 109.47501 * 44.99765 * 18 17 14 38 38 H 1.08994 * 109.47533 * 59.99392 * 20 19 18 39 39 H 1.08997 * 109.46668 * 180.02562 * 20 19 18 40 40 H 1.09004 * 109.46355 * 299.99658 * 20 19 18 41 41 H 1.08994 * 109.47456 * 90.78305 * 21 19 18 42 42 H 1.08997 * 109.47304 * 210.78673 * 21 19 18 43 43 H 1.09003 * 109.46944 * 330.78249 * 21 19 18 44 44 H 1.08997 * 109.47667 * 292.03040 * 22 19 18 45 45 H 1.09003 * 109.47010 * 52.02756 * 22 19 18 46 46 H 1.09010 * 110.66569 * 278.15502 * 24 23 22 47 47 H 1.08993 * 110.66829 * 41.28710 * 24 23 22 48 48 H 1.08992 * 110.72578 * 204.22708 * 25 24 23 49 49 H 1.09001 * 110.72415 * 80.94277 * 25 24 23 50 50 H 1.09003 * 110.31019 * 263.03956 * 26 25 24 51 51 H 1.09003 * 110.38961 * 140.91765 * 26 25 24 52 52 H 1.08999 * 109.91574 * 333.50518 * 27 23 22 53 53 H 1.08996 * 109.91574 * 94.60686 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.5694 -1.6424 -1.1345 6 6 1.8063 -0.1703 -2.4787 7 7 1.9624 -0.9115 -3.5539 8 14 1.2858 1.6162 -2.6434 9 1 1.1146 1.9515 -4.0799 10 1 0.0005 1.8250 -1.9297 11 1 2.3287 2.4921 -2.0515 12 7 2.0183 -0.6905 1.1961 13 6 1.6645 -2.0931 1.4280 14 16 2.9703 0.1142 2.2862 15 8 3.7118 -0.8788 2.9814 16 8 3.5793 1.1831 1.5748 17 7 1.9606 0.8091 3.3997 18 6 1.1509 -0.0352 4.2817 19 6 0.6087 0.8075 5.4379 20 6 1.7767 1.3992 6.2294 21 6 -0.2561 1.9404 4.8813 22 6 -0.2374 -0.0741 6.3585 23 7 -0.5994 0.6827 7.5644 24 6 -1.3517 1.9146 7.2138 25 6 -2.0789 2.2737 8.5340 26 6 -2.4665 0.8894 9.1027 27 6 -1.4991 -0.1052 8.4346 28 1 -0.3634 -1.0227 -0.1009 29 1 -0.3634 0.4239 0.9361 30 1 -0.3634 0.5987 -0.8352 31 1 2.3028 -1.8162 -3.4740 32 1 2.4158 -2.7376 0.9717 33 1 1.6238 -2.2851 2.5002 34 1 0.6904 -2.3001 0.9846 35 1 1.9053 1.7751 3.4682 36 1 0.3188 -0.4567 3.7177 37 1 1.7669 -0.8423 4.6782 38 1 2.3792 2.0273 5.5733 39 1 1.3903 1.9991 7.0533 40 1 2.3927 0.5919 6.6258 41 1 -1.2920 1.6081 4.8155 42 1 -0.1930 2.8043 5.5430 43 1 0.1009 2.2161 3.8890 44 1 -1.1437 -0.3805 5.8362 45 1 0.3347 -0.9575 6.6421 46 1 -0.6688 2.7124 6.9215 47 1 -2.0716 1.7131 6.4206 48 1 -2.9682 2.8714 8.3342 49 1 -1.4068 2.7960 9.2148 50 1 -3.4969 0.6481 8.8417 51 1 -2.3374 0.8737 10.1849 52 1 -2.0596 -0.8233 7.8360 53 1 -0.9172 -0.6285 9.1934 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337750639.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:54:20 Heat of formation + Delta-G solvation = -87.427546 kcal Electronic energy + Delta-G solvation = -31041.870944 eV Core-core repulsion = 27074.676972 eV Total energy + Delta-G solvation = -3967.193972 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.203 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.73292 -38.45489 -38.17126 -37.95825 -36.94139 -34.62694 -34.43017 -31.75995 -31.59766 -29.93903 -28.02031 -27.59363 -27.28508 -26.60658 -25.63140 -22.48733 -21.85811 -21.62019 -20.37096 -20.09717 -19.58738 -18.85455 -18.33608 -17.45350 -17.07873 -16.70642 -16.22532 -15.91509 -15.72007 -15.31943 -15.08037 -14.89874 -14.87129 -14.78649 -14.58351 -14.24978 -13.99653 -13.68659 -13.54736 -13.44856 -13.36643 -13.29752 -13.20716 -13.07650 -12.93182 -12.82022 -12.63605 -12.50262 -12.40250 -12.20233 -12.17613 -11.93805 -11.78235 -11.59018 -11.51512 -11.44936 -11.31613 -11.13920 -11.09112 -10.48866 -10.41171 -9.86339 -9.26818 -8.69737 -6.35882 -0.40033 1.43067 1.57317 1.71260 1.98908 2.48199 2.58295 3.04924 3.09287 3.37948 3.70674 3.75583 3.85385 3.89965 3.96115 4.07113 4.16645 4.39567 4.41782 4.43679 4.49054 4.56131 4.62831 4.67426 4.73021 4.73922 4.75095 4.78669 4.82658 4.85787 4.91798 4.95625 5.00526 5.03332 5.06494 5.08746 5.17605 5.19128 5.24192 5.32237 5.33179 5.36229 5.51343 5.55420 5.59301 5.76149 5.99196 6.03500 6.05731 6.13366 6.16026 6.61587 7.41868 8.65674 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017523 B = 0.002892 C = 0.002754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.471422 B = 9680.328892 C =10166.057145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.245 3.755 3 H 0.042 0.958 4 C -0.604 4.604 5 H 0.025 0.975 6 C -0.018 4.018 7 N -0.937 5.937 8 Si 1.065 2.935 9 H -0.287 1.287 10 H -0.220 1.220 11 H -0.274 1.274 12 N -0.992 5.992 13 C 0.107 3.893 14 S 2.795 3.205 15 O -1.010 7.010 16 O -1.016 7.016 17 N -1.111 6.111 18 C 0.123 3.877 19 C -0.058 4.058 20 C -0.130 4.130 21 C -0.160 4.160 22 C 0.060 3.940 23 N -0.520 5.520 24 C 0.020 3.980 25 C -0.127 4.127 26 C -0.129 4.129 27 C 0.032 3.968 28 H 0.052 0.948 29 H 0.067 0.933 30 H 0.059 0.941 31 H 0.251 0.749 32 H 0.026 0.974 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.422 0.578 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.047 0.953 39 H 0.073 0.927 40 H 0.046 0.954 41 H 0.065 0.935 42 H 0.081 0.919 43 H 0.055 0.945 44 H 0.044 0.956 45 H 0.076 0.924 46 H 0.096 0.904 47 H 0.051 0.949 48 H 0.078 0.922 49 H 0.070 0.930 50 H 0.070 0.930 51 H 0.074 0.926 52 H 0.044 0.956 53 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.686 6.008 26.835 30.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.139 3.861 3 H 0.059 0.941 4 C -0.643 4.643 5 H 0.043 0.957 6 C -0.217 4.217 7 N -0.574 5.574 8 Si 0.887 3.113 9 H -0.213 1.213 10 H -0.144 1.144 11 H -0.200 1.200 12 N -0.833 5.833 13 C -0.039 4.039 14 S 2.804 3.196 15 O -0.994 6.994 16 O -1.000 7.000 17 N -0.876 5.876 18 C -0.003 4.003 19 C -0.060 4.060 20 C -0.187 4.187 21 C -0.217 4.217 22 C -0.069 4.069 23 N -0.244 5.244 24 C -0.107 4.107 25 C -0.165 4.165 26 C -0.167 4.167 27 C -0.096 4.096 28 H 0.071 0.929 29 H 0.086 0.914 30 H 0.078 0.922 31 H 0.061 0.939 32 H 0.045 0.955 33 H 0.104 0.896 34 H 0.098 0.902 35 H 0.260 0.740 36 H 0.096 0.904 37 H 0.092 0.908 38 H 0.066 0.934 39 H 0.092 0.908 40 H 0.065 0.935 41 H 0.084 0.916 42 H 0.099 0.901 43 H 0.074 0.926 44 H 0.062 0.938 45 H 0.094 0.906 46 H 0.114 0.886 47 H 0.069 0.931 48 H 0.097 0.903 49 H 0.089 0.911 50 H 0.089 0.911 51 H 0.093 0.907 52 H 0.062 0.938 53 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -11.673 7.070 26.001 29.365 hybrid contribution 0.075 -1.825 0.007 1.827 sum -11.598 5.245 26.008 28.956 Atomic orbital electron populations 1.22415 0.95772 1.01937 1.01408 1.18805 0.92858 0.92171 0.82287 0.94073 1.22436 1.39816 1.08842 0.93209 0.95672 1.27065 0.94771 1.08056 0.91775 1.70988 1.44005 1.10247 1.32127 0.83904 0.79554 0.71031 0.76857 1.21333 1.14399 1.19975 1.57407 1.70107 1.20905 1.34887 1.21303 1.01311 0.80352 1.00935 1.01249 0.73582 0.72344 0.72412 1.93519 1.69823 1.61462 1.74551 1.93550 1.75752 1.57270 1.73396 1.55720 1.62177 1.18129 1.51545 1.21463 0.94753 0.92891 0.91221 1.20626 0.96218 0.95788 0.93388 1.21755 0.96587 1.00753 0.99645 1.22543 0.99518 0.98304 1.01347 1.22255 0.98311 0.96063 0.90299 1.64760 1.38866 1.05649 1.15160 1.23902 0.96367 0.93585 0.96822 1.22553 1.00345 0.96922 0.96711 1.22386 0.98814 0.94673 1.00867 1.22894 0.93936 0.96076 0.96678 0.92928 0.91414 0.92234 0.93946 0.95514 0.89619 0.90169 0.74029 0.90432 0.90810 0.93420 0.90792 0.93527 0.91632 0.90058 0.92640 0.93796 0.90556 0.88593 0.93098 0.90307 0.91135 0.91123 0.90692 0.93783 0.90586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.77 8.72 71.98 0.63 -5.14 16 2 C 0.24 10.95 2.20 44.24 0.10 11.05 16 3 H 0.04 1.92 5.57 -2.38 -0.01 1.91 16 4 C -0.60 -33.76 8.69 25.60 0.22 -33.53 16 5 H 0.02 1.55 7.74 -2.91 -0.02 1.53 16 6 C -0.02 -1.04 5.36 84.65 0.45 -0.58 16 7 N -0.94 -58.50 13.70 21.45 0.29 -58.21 16 8 Si 1.07 48.83 26.40 68.60 1.81 50.64 16 9 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 10 H -0.22 -8.30 5.41 99.48 0.54 -7.76 16 11 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 12 N -0.99 -38.57 3.12 -520.47 -1.62 -40.19 16 13 C 0.11 3.62 9.47 127.77 1.21 4.83 16 14 S 2.80 102.62 6.09 -56.49 -0.34 102.27 16 15 O -1.01 -40.50 16.68 -128.00 -2.14 -42.63 16 16 O -1.02 -45.44 16.70 -128.00 -2.14 -47.58 16 17 N -1.11 -27.53 5.18 -187.48 -0.97 -28.50 16 18 C 0.12 2.42 5.10 86.38 0.44 2.86 16 19 C -0.06 -0.91 0.53 -52.18 -0.03 -0.94 16 20 C -0.13 -2.23 7.83 71.98 0.56 -1.66 16 21 C -0.16 -2.19 7.18 71.98 0.52 -1.67 16 22 C 0.06 0.85 3.98 86.30 0.34 1.20 16 23 N -0.52 -7.18 4.36 -883.02 -3.85 -11.03 16 24 C 0.02 0.23 4.37 86.65 0.38 0.61 16 25 C -0.13 -1.27 7.06 31.80 0.22 -1.05 16 26 C -0.13 -1.27 6.93 31.47 0.22 -1.05 16 27 C 0.03 0.39 6.70 86.45 0.58 0.97 16 28 H 0.05 1.93 6.91 -2.39 -0.02 1.92 16 29 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.06 2.25 4.68 -2.39 -0.01 2.24 16 31 H 0.25 15.97 8.73 -92.71 -0.81 15.16 16 32 H 0.03 1.00 8.09 -2.39 -0.02 0.99 16 33 H 0.09 2.25 7.79 -2.39 -0.02 2.24 16 34 H 0.08 2.55 6.54 -2.39 -0.02 2.54 16 35 H 0.42 9.01 6.64 -96.74 -0.64 8.37 16 36 H 0.08 1.35 8.14 -2.39 -0.02 1.34 16 37 H 0.07 1.53 7.75 -2.39 -0.02 1.52 16 38 H 0.05 0.85 7.19 -2.39 -0.02 0.83 16 39 H 0.07 1.18 6.52 -2.39 -0.02 1.17 16 40 H 0.05 0.88 8.14 -2.38 -0.02 0.86 16 41 H 0.06 0.82 6.09 -2.39 -0.01 0.81 16 42 H 0.08 0.95 5.09 -2.39 -0.01 0.94 16 43 H 0.05 0.84 6.31 -2.39 -0.02 0.82 16 44 H 0.04 0.59 7.75 -2.39 -0.02 0.58 16 45 H 0.08 1.13 8.13 -2.39 -0.02 1.11 16 46 H 0.10 1.10 4.71 -2.38 -0.01 1.09 16 47 H 0.05 0.59 6.34 -2.39 -0.02 0.58 16 48 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 49 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 50 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 51 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 52 H 0.04 0.53 7.67 -2.39 -0.02 0.51 16 53 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -73.90 397.36 -3.05 -76.95 By element: Atomic # 1 Polarization: 22.33 SS G_CDS: 0.05 Total: 22.39 kcal Atomic # 6 Polarization: -29.96 SS G_CDS: 5.85 Total: -24.11 kcal Atomic # 7 Polarization: -131.78 SS G_CDS: -6.15 Total: -137.92 kcal Atomic # 8 Polarization: -85.94 SS G_CDS: -4.27 Total: -90.21 kcal Atomic # 14 Polarization: 48.83 SS G_CDS: 1.81 Total: 50.64 kcal Atomic # 16 Polarization: 102.62 SS G_CDS: -0.34 Total: 102.27 kcal Total: -73.90 -3.05 -76.95 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337750639.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.477 kcal (2) G-P(sol) polarization free energy of solvation -73.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds