Wall clock time and date at job start Wed Apr 1 2020 04:54:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.47203 * 2 1 4 4 C 1.50693 * 109.47103 * 120.00752 * 2 1 3 5 5 H 1.07997 * 120.00334 * 120.00096 * 4 2 1 6 6 C 1.37876 * 119.99832 * 299.99586 * 4 2 1 7 7 N 1.31509 * 120.00133 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99897 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47077 * 269.99867 * 8 6 4 10 10 H 1.48500 * 109.47216 * 29.99859 * 8 6 4 11 11 H 1.48504 * 109.47193 * 149.99973 * 8 6 4 12 12 N 1.46500 * 109.46580 * 240.00300 * 2 1 3 13 13 C 1.46495 * 120.00326 * 299.99751 * 12 2 1 14 14 S 1.65609 * 119.99885 * 119.99959 * 12 2 1 15 15 O 1.42090 * 106.40320 * 203.53869 * 14 12 2 16 16 O 1.42096 * 106.39999 * 336.46001 * 14 12 2 17 17 N 1.65600 * 107.21475 * 89.99798 * 14 12 2 18 18 C 1.46503 * 119.99937 * 65.00382 * 17 14 12 19 19 C 1.53004 * 109.46796 * 164.99857 * 18 17 14 20 20 C 1.52997 * 109.47078 * 299.99690 * 19 18 17 21 21 C 1.52992 * 109.47221 * 59.99996 * 19 18 17 22 22 C 1.53002 * 109.46780 * 179.97438 * 19 18 17 23 23 N 1.46898 * 109.47123 * 164.05550 * 22 19 18 24 24 C 1.48535 * 110.99792 * 58.04263 * 23 22 19 25 25 C 1.54935 * 103.22775 * 159.71941 * 24 23 22 26 26 C 1.54589 * 102.92045 * 322.58596 * 25 24 23 27 27 C 1.47898 * 111.00189 * 175.43450 * 23 22 19 28 28 H 1.08998 * 109.47203 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46674 * 299.99485 * 1 2 3 30 30 H 1.08995 * 109.47683 * 59.99330 * 1 2 3 31 31 H 0.97009 * 120.00438 * 179.97438 * 7 6 4 32 32 H 1.09007 * 109.47119 * 90.00196 * 13 12 2 33 33 H 1.09001 * 109.47524 * 209.99728 * 13 12 2 34 34 H 1.09001 * 109.47415 * 330.00774 * 13 12 2 35 35 H 0.96996 * 119.99761 * 244.99882 * 17 14 12 36 36 H 1.08999 * 109.46921 * 284.99444 * 18 17 14 37 37 H 1.08996 * 109.47178 * 44.99859 * 18 17 14 38 38 H 1.08999 * 109.47237 * 60.00068 * 20 19 18 39 39 H 1.09004 * 109.47140 * 180.02562 * 20 19 18 40 40 H 1.08999 * 109.46884 * 300.00387 * 20 19 18 41 41 H 1.08999 * 109.47355 * 77.37581 * 21 19 18 42 42 H 1.09000 * 109.47428 * 197.37718 * 21 19 18 43 43 H 1.09001 * 109.47577 * 317.37568 * 21 19 18 44 44 H 1.08995 * 109.47191 * 284.06023 * 22 19 18 45 45 H 1.09007 * 109.47317 * 44.05842 * 22 19 18 46 46 H 1.09005 * 110.66762 * 278.15696 * 24 23 22 47 47 H 1.08999 * 110.66981 * 41.28369 * 24 23 22 48 48 H 1.08995 * 110.72370 * 204.22305 * 25 24 23 49 49 H 1.09001 * 110.72009 * 80.94487 * 25 24 23 50 50 H 1.09004 * 110.30858 * 263.03949 * 26 25 24 51 51 H 1.09005 * 110.39219 * 140.91701 * 26 25 24 52 52 H 1.08997 * 109.91654 * 333.51506 * 27 23 22 53 53 H 1.09003 * 109.91299 * 94.60909 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1312 6 6 1.6993 -0.2396 2.4826 7 7 0.9437 0.8300 2.6034 8 14 2.3225 -1.1199 4.0077 9 1 1.3448 -2.1619 4.4121 10 1 3.6309 -1.7570 3.7117 11 1 2.4874 -0.1407 5.1119 12 7 2.0182 -0.6906 -1.1962 13 6 1.6643 -2.0931 -1.4282 14 16 2.9703 0.1143 -2.2864 15 8 2.8226 -0.5643 -3.5260 16 8 2.6903 1.4973 -2.1193 17 7 4.5436 -0.1042 -1.8182 18 6 5.1356 -1.4441 -1.8419 19 6 6.6576 -1.3311 -1.7339 20 6 7.1934 -0.5160 -2.9126 21 6 7.0255 -0.6341 -0.4226 22 6 7.2758 -2.7305 -1.7580 23 7 8.7141 -2.6257 -2.0377 24 6 9.3935 -1.7804 -1.0228 25 6 10.8790 -2.2029 -1.1465 26 6 10.7852 -3.7240 -1.4061 27 6 9.3669 -3.9506 -1.9612 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 0.7091 1.1612 3.4845 32 1 0.7374 -2.1442 -1.9995 33 1 2.4627 -2.5818 -1.9867 34 1 1.5294 -2.5969 -0.4710 35 1 5.0732 0.6550 -1.5284 36 1 4.7539 -2.0248 -1.0021 37 1 4.8735 -1.9406 -2.7761 38 1 6.7529 0.4809 -2.8950 39 1 8.2778 -0.4359 -2.8359 40 1 6.9312 -1.0126 -3.8468 41 1 6.9281 -1.3388 0.4033 42 1 8.0542 -0.2777 -0.4767 43 1 6.3564 0.2109 -0.2600 44 1 7.1278 -3.2097 -0.7903 45 1 6.7969 -3.3260 -2.5353 46 1 9.2732 -0.7232 -1.2597 47 1 9.0136 -1.9975 -0.0245 48 1 11.4156 -2.0022 -0.2193 49 1 11.3553 -1.6969 -1.9863 50 1 10.9199 -4.2756 -0.4757 51 1 11.5317 -4.0310 -2.1387 52 1 8.8059 -4.6028 -1.2919 53 1 9.4205 -4.3960 -2.9547 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337750641.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:54:23 Heat of formation + Delta-G solvation = -88.622413 kcal Electronic energy + Delta-G solvation = -31185.894731 eV Core-core repulsion = 27218.648946 eV Total energy + Delta-G solvation = -3967.245785 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.203 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.71862 -38.38541 -38.07047 -37.83489 -36.88199 -34.50226 -34.38593 -31.75402 -30.91741 -29.83238 -28.10470 -27.57504 -27.24213 -26.97871 -25.61507 -22.61349 -21.93068 -21.62552 -20.39758 -20.04755 -18.76137 -18.32364 -18.23681 -17.41533 -17.09942 -16.82470 -16.43709 -16.06660 -15.64732 -15.11622 -15.04872 -14.84055 -14.73886 -14.57867 -14.43669 -14.26692 -13.73287 -13.63015 -13.42930 -13.31525 -13.18953 -13.14593 -13.04138 -12.98489 -12.84268 -12.73660 -12.65490 -12.58512 -12.38083 -12.21317 -12.14375 -12.12786 -11.99530 -11.89209 -11.63533 -11.45679 -11.37046 -11.18830 -11.12534 -10.49185 -10.35936 -9.64932 -9.30485 -8.07964 -6.22512 -0.25850 1.45094 1.46715 1.55299 2.03959 2.46010 2.65197 3.05023 3.20692 3.46874 3.71312 3.76339 3.82949 3.94090 4.04725 4.10686 4.17829 4.39894 4.44156 4.44785 4.58463 4.65826 4.71385 4.74516 4.77509 4.80434 4.83473 4.85445 4.90435 4.97943 4.98499 5.02581 5.04011 5.07580 5.10914 5.16362 5.18330 5.21984 5.27353 5.33383 5.36372 5.48561 5.56189 5.62120 5.69096 5.86000 6.01836 6.07333 6.13271 6.19759 6.30535 6.86859 7.47030 8.96743 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011127 B = 0.003612 C = 0.002996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2515.802968 B = 7750.936711 C = 9342.282240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.274 3.726 3 H 0.024 0.976 4 C -0.525 4.525 5 H 0.071 0.929 6 C 0.016 3.984 7 N -0.919 5.919 8 Si 0.958 3.042 9 H -0.277 1.277 10 H -0.265 1.265 11 H -0.290 1.290 12 N -0.996 5.996 13 C 0.099 3.901 14 S 2.799 3.201 15 O -1.007 7.007 16 O -1.021 7.021 17 N -1.114 6.114 18 C 0.128 3.872 19 C -0.059 4.059 20 C -0.127 4.127 21 C -0.162 4.162 22 C 0.061 3.939 23 N -0.517 5.517 24 C 0.022 3.978 25 C -0.125 4.125 26 C -0.128 4.128 27 C 0.031 3.969 28 H 0.043 0.957 29 H 0.069 0.931 30 H 0.017 0.983 31 H 0.262 0.738 32 H 0.049 0.951 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.418 0.582 36 H 0.065 0.935 37 H 0.079 0.921 38 H 0.044 0.956 39 H 0.076 0.924 40 H 0.051 0.949 41 H 0.051 0.949 42 H 0.087 0.913 43 H 0.049 0.951 44 H 0.038 0.962 45 H 0.081 0.919 46 H 0.093 0.907 47 H 0.045 0.955 48 H 0.078 0.922 49 H 0.073 0.927 50 H 0.069 0.931 51 H 0.078 0.922 52 H 0.042 0.958 53 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.259 -9.607 -6.807 21.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.170 3.830 3 H 0.042 0.958 4 C -0.565 4.565 5 H 0.089 0.911 6 C -0.183 4.183 7 N -0.559 5.559 8 Si 0.784 3.216 9 H -0.203 1.203 10 H -0.190 1.190 11 H -0.217 1.217 12 N -0.838 5.838 13 C -0.046 4.046 14 S 2.808 3.192 15 O -0.990 6.990 16 O -1.005 7.005 17 N -0.877 5.877 18 C 0.001 3.999 19 C -0.061 4.061 20 C -0.184 4.184 21 C -0.219 4.219 22 C -0.068 4.068 23 N -0.241 5.241 24 C -0.105 4.105 25 C -0.163 4.163 26 C -0.166 4.166 27 C -0.097 4.097 28 H 0.063 0.937 29 H 0.088 0.912 30 H 0.036 0.964 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.094 0.906 34 H 0.096 0.904 35 H 0.254 0.746 36 H 0.084 0.916 37 H 0.097 0.903 38 H 0.063 0.937 39 H 0.095 0.905 40 H 0.070 0.930 41 H 0.070 0.930 42 H 0.105 0.895 43 H 0.068 0.932 44 H 0.057 0.943 45 H 0.099 0.901 46 H 0.111 0.889 47 H 0.063 0.937 48 H 0.097 0.903 49 H 0.092 0.908 50 H 0.088 0.912 51 H 0.097 0.903 52 H 0.060 0.940 53 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 17.800 -8.960 -8.043 21.489 hybrid contribution -0.118 -0.319 2.262 2.287 sum 17.682 -9.278 -5.781 20.789 Atomic orbital electron populations 1.21950 0.98068 1.00028 0.99861 1.18368 0.91805 0.91383 0.81453 0.95837 1.21612 1.31355 1.12991 0.90505 0.91129 1.25674 0.95269 0.95579 1.01803 1.70022 1.37590 1.24020 1.24227 0.85566 0.78929 0.78111 0.79012 1.20272 1.18981 1.21650 1.57586 1.65279 1.22415 1.38515 1.21401 1.00442 0.80585 1.02207 1.01110 0.73131 0.71938 0.73028 1.93518 1.86597 1.76294 1.42616 1.93535 1.84685 1.34977 1.87315 1.55711 1.30639 1.16294 1.85105 1.21378 0.94285 0.82265 1.01944 1.20626 0.92332 0.96124 0.97008 1.21734 1.01821 0.98450 0.96445 1.22454 1.03053 1.00565 0.95778 1.22257 0.88963 0.95386 1.00220 1.64808 1.02147 1.10666 1.46450 1.23753 0.93956 0.98994 0.93799 1.22538 0.95803 0.95648 1.02355 1.22381 0.96250 0.96641 1.01352 1.22914 0.94851 0.90678 1.01221 0.93743 0.91223 0.96378 0.92824 0.93185 0.90645 0.90418 0.74596 0.91634 0.90296 0.93699 0.90540 0.93019 0.92973 0.89494 0.93236 0.94337 0.90067 0.88947 0.93696 0.90337 0.90777 0.91221 0.90320 0.93966 0.90164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.71 8.97 71.98 0.65 -6.06 16 2 C 0.27 13.38 2.62 44.24 0.12 13.50 16 3 H 0.02 1.32 6.91 -2.39 -0.02 1.30 16 4 C -0.53 -26.24 7.99 25.60 0.20 -26.04 16 5 H 0.07 3.34 7.33 -2.91 -0.02 3.32 16 6 C 0.02 0.84 5.30 84.66 0.45 1.29 16 7 N -0.92 -50.89 11.32 21.45 0.24 -50.64 16 8 Si 0.96 40.88 29.54 68.60 2.03 42.90 16 9 H -0.28 -11.59 7.11 99.48 0.71 -10.88 16 10 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 11 H -0.29 -12.51 7.11 99.48 0.71 -11.81 16 12 N -1.00 -40.29 3.12 -520.46 -1.62 -41.91 16 13 C 0.10 3.32 9.28 127.77 1.19 4.51 16 14 S 2.80 108.39 6.09 -56.49 -0.34 108.04 16 15 O -1.01 -40.10 16.68 -128.00 -2.14 -42.24 16 16 O -1.02 -47.52 16.70 -128.00 -2.14 -49.66 16 17 N -1.11 -34.05 5.29 -187.48 -0.99 -35.05 16 18 C 0.13 3.24 5.07 86.38 0.44 3.68 16 19 C -0.06 -1.24 0.53 -52.18 -0.03 -1.26 16 20 C -0.13 -2.63 7.81 71.98 0.56 -2.07 16 21 C -0.16 -3.42 7.17 71.98 0.52 -2.91 16 22 C 0.06 1.13 4.19 86.30 0.36 1.49 16 23 N -0.52 -8.83 4.31 -883.03 -3.81 -12.64 16 24 C 0.02 0.34 4.11 86.65 0.36 0.70 16 25 C -0.13 -1.58 7.06 31.80 0.22 -1.36 16 26 C -0.13 -1.54 6.93 31.47 0.22 -1.32 16 27 C 0.03 0.46 6.70 86.44 0.58 1.04 16 28 H 0.04 1.97 7.67 -2.39 -0.02 1.95 16 29 H 0.07 3.68 6.07 -2.38 -0.01 3.67 16 30 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.26 13.90 8.31 -92.70 -0.77 13.13 16 32 H 0.05 1.59 8.14 -2.38 -0.02 1.57 16 33 H 0.07 2.10 7.79 -2.39 -0.02 2.08 16 34 H 0.08 2.62 7.02 -2.39 -0.02 2.61 16 35 H 0.42 11.91 6.46 -96.75 -0.62 11.29 16 36 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.08 1.94 7.75 -2.39 -0.02 1.92 16 38 H 0.04 0.97 7.20 -2.39 -0.02 0.95 16 39 H 0.08 1.44 5.61 -2.38 -0.01 1.43 16 40 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.05 1.15 7.61 -2.39 -0.02 1.13 16 42 H 0.09 1.54 4.53 -2.39 -0.01 1.53 16 43 H 0.05 1.19 6.28 -2.39 -0.01 1.17 16 44 H 0.04 0.73 7.63 -2.39 -0.02 0.72 16 45 H 0.08 1.47 8.04 -2.38 -0.02 1.45 16 46 H 0.09 1.44 4.65 -2.38 -0.01 1.43 16 47 H 0.04 0.75 6.99 -2.39 -0.02 0.73 16 48 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 49 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 50 H 0.07 0.77 8.14 -2.38 -0.02 0.76 16 51 H 0.08 0.82 8.14 -2.38 -0.02 0.80 16 52 H 0.04 0.63 7.66 -2.39 -0.02 0.61 16 53 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -64.18 402.92 -2.68 -66.86 By element: Atomic # 1 Polarization: 28.87 SS G_CDS: 0.27 Total: 29.14 kcal Atomic # 6 Polarization: -20.64 SS G_CDS: 5.83 Total: -14.81 kcal Atomic # 7 Polarization: -134.05 SS G_CDS: -6.18 Total: -140.23 kcal Atomic # 8 Polarization: -87.62 SS G_CDS: -4.27 Total: -91.90 kcal Atomic # 14 Polarization: 40.88 SS G_CDS: 2.03 Total: 42.90 kcal Atomic # 16 Polarization: 108.39 SS G_CDS: -0.34 Total: 108.04 kcal Total: -64.18 -2.68 -66.86 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337750641.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.763 kcal (2) G-P(sol) polarization free energy of solvation -64.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds