Wall clock time and date at job start Wed Apr 1 2020 04:54:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.47203 * 2 1 4 4 C 1.50697 * 109.47161 * 240.00239 * 2 1 3 5 5 H 1.08001 * 119.99888 * 239.99744 * 4 2 1 6 6 C 1.37878 * 120.00304 * 59.99609 * 4 2 1 7 7 N 1.31516 * 119.99568 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00105 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.47081 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.46918 * 120.00205 * 8 6 4 11 11 H 1.48493 * 109.47221 * 240.00006 * 8 6 4 12 12 N 1.46503 * 109.47273 * 120.00104 * 2 1 3 13 13 C 1.46498 * 120.00128 * 60.00025 * 12 2 1 14 14 S 1.65598 * 119.99746 * 240.00336 * 12 2 1 15 15 O 1.42094 * 106.40164 * 156.46273 * 14 12 2 16 16 O 1.42096 * 106.40465 * 23.53364 * 14 12 2 17 17 N 1.65608 * 107.21716 * 269.99726 * 14 12 2 18 18 C 1.46495 * 119.99985 * 64.99910 * 17 14 12 19 19 C 1.52999 * 109.47235 * 162.46976 * 18 17 14 20 20 H 1.08998 * 109.46155 * 51.67513 * 19 18 17 21 21 N 1.46846 * 109.45602 * 171.64630 * 19 18 17 22 22 C 1.46900 * 110.99924 * 305.85116 * 21 19 18 23 23 C 1.46844 * 111.20029 * 181.75446 * 21 19 18 24 24 C 1.53035 * 109.52678 * 298.25832 * 23 21 19 25 25 C 1.53121 * 109.27713 * 59.17280 * 24 23 21 26 26 C 1.53033 * 109.46574 * 291.69330 * 19 18 17 27 27 C 1.53001 * 109.50238 * 60.87175 * 26 19 18 28 28 C 1.52999 * 109.50335 * 300.75923 * 26 19 18 29 29 H 1.09007 * 109.46882 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47180 * 299.99656 * 1 2 3 31 31 H 1.09001 * 109.47348 * 59.99973 * 1 2 3 32 32 H 0.97005 * 119.99198 * 180.02562 * 7 6 4 33 33 H 1.09001 * 109.46911 * 270.00433 * 13 12 2 34 34 H 1.09003 * 109.46722 * 30.00210 * 13 12 2 35 35 H 1.08991 * 109.47145 * 149.99884 * 13 12 2 36 36 H 0.96999 * 120.00011 * 245.00398 * 17 14 12 37 37 H 1.09005 * 109.47331 * 42.47374 * 18 17 14 38 38 H 1.09002 * 109.47625 * 282.47329 * 18 17 14 39 39 H 1.09002 * 109.47209 * 66.84555 * 22 21 19 40 40 H 1.08996 * 109.47650 * 186.84680 * 22 21 19 41 41 H 1.09005 * 109.47192 * 306.84557 * 22 21 19 42 42 H 1.09002 * 109.46460 * 178.23902 * 23 21 19 43 43 H 1.09005 * 109.46355 * 58.27258 * 23 21 19 44 44 H 1.09007 * 109.49978 * 299.23999 * 24 23 21 45 45 H 1.08993 * 109.51053 * 179.12046 * 24 23 21 46 46 H 1.08998 * 109.52124 * 62.25625 * 25 24 23 47 47 H 1.09001 * 109.52122 * 182.44083 * 25 24 23 48 48 H 1.08996 * 109.47364 * 171.21721 * 27 26 19 49 49 H 1.09004 * 109.47094 * 291.21888 * 27 26 19 50 50 H 1.08997 * 109.47283 * 51.21529 * 27 26 19 51 51 H 1.09006 * 109.46905 * 300.18842 * 28 26 19 52 52 H 1.09002 * 109.47631 * 60.19261 * 28 26 19 53 53 H 1.09007 * 109.47470 * 180.19707 * 28 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1314 6 6 1.6992 -0.2393 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3225 -1.1195 -4.0080 9 1 3.1474 -2.2862 -3.6038 10 1 1.1678 -1.5866 -4.8165 11 1 3.1471 -0.1857 -4.8161 12 7 2.0183 -0.6906 1.1962 13 6 1.6645 -2.0932 1.4280 14 16 2.9703 0.1142 2.2862 15 8 2.8228 -0.5646 3.5258 16 8 2.6903 1.4973 2.1192 17 7 4.5438 -0.1041 1.8180 18 6 5.0139 0.4530 0.5473 19 6 6.5430 0.5035 0.5472 20 1 6.9387 -0.4755 0.8174 21 7 7.0202 0.8713 -0.7920 22 6 6.4675 -0.0284 -1.8133 23 6 8.4875 0.8906 -0.8462 24 6 9.0216 1.9427 0.1283 25 6 8.5488 1.6056 1.5452 26 6 7.0190 1.5441 1.5633 27 6 6.5402 1.1488 2.9616 28 6 6.4483 2.9153 1.1957 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 0.7088 1.1613 -3.4844 33 1 0.7376 -2.1444 1.9993 34 1 1.5296 -2.5968 0.4708 35 1 2.4629 -2.5818 1.9863 36 1 5.1540 -0.6010 2.3850 37 1 4.6172 1.4607 0.4234 38 1 4.6710 -0.1759 -0.2743 39 1 5.3902 0.1216 -1.8850 40 1 6.9293 0.1880 -2.7766 41 1 6.6727 -1.0624 -1.5361 42 1 8.8104 1.1357 -1.8581 43 1 8.8741 -0.0903 -0.5694 44 1 8.6464 2.9259 -0.1561 45 1 10.1111 1.9460 0.0993 46 1 8.9557 0.6398 1.8448 47 1 8.8907 2.3761 2.2362 48 1 7.0062 1.7986 3.7024 49 1 5.4566 1.2527 3.0175 50 1 6.8167 0.1136 3.1612 51 1 6.7886 3.1951 0.1987 52 1 5.3592 2.8709 1.2088 53 1 6.7904 3.6568 1.9178 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337779633.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:54:57 Heat of formation + Delta-G solvation = -87.624562 kcal Electronic energy + Delta-G solvation = -32670.633077 eV Core-core repulsion = 28703.430562 eV Total energy + Delta-G solvation = -3967.202515 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.203 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.21203 -38.33758 -37.86409 -36.90711 -36.51233 -35.71739 -34.47505 -32.58315 -30.90381 -28.98861 -28.10322 -27.48800 -27.20970 -26.98340 -25.83441 -22.59696 -22.46230 -22.29855 -20.43312 -19.36068 -18.71010 -18.33315 -18.31005 -17.31636 -16.77455 -16.59046 -16.40662 -16.13710 -15.78348 -15.21410 -15.10079 -14.91279 -14.69411 -14.41450 -14.21655 -14.02016 -13.71738 -13.56128 -13.42521 -13.39008 -13.32856 -13.17579 -13.10759 -13.07176 -12.96898 -12.76355 -12.73646 -12.65664 -12.56662 -12.32153 -12.16196 -12.12584 -12.08723 -11.87033 -11.81645 -11.32499 -11.17011 -11.10664 -11.03156 -10.46699 -10.09910 -9.65072 -9.19464 -8.05253 -6.19236 -0.29274 1.45400 1.49212 1.57914 2.00607 2.47633 2.60562 2.99881 3.24056 3.44219 3.66767 3.72573 3.93426 4.09231 4.18109 4.22493 4.29056 4.44271 4.46752 4.51708 4.56714 4.61948 4.67183 4.71812 4.80246 4.82756 4.84905 4.92885 4.97357 4.98426 4.99180 5.03690 5.04362 5.11871 5.17271 5.17802 5.18467 5.23215 5.27620 5.36747 5.41631 5.50404 5.63313 5.68125 5.70604 5.86486 6.06319 6.13520 6.20510 6.26459 6.32632 6.89584 7.50203 8.99755 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010061 B = 0.005562 C = 0.004018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2782.341994 B = 5032.917010 C = 6966.484696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.274 3.726 3 H 0.025 0.975 4 C -0.519 4.519 5 H 0.069 0.931 6 C 0.022 3.978 7 N -0.916 5.916 8 Si 0.949 3.051 9 H -0.260 1.260 10 H -0.288 1.288 11 H -0.283 1.283 12 N -0.998 5.998 13 C 0.101 3.899 14 S 2.795 3.205 15 O -1.009 7.009 16 O -1.014 7.014 17 N -1.109 6.109 18 C 0.126 3.874 19 C 0.100 3.900 20 H 0.055 0.945 21 N -0.544 5.544 22 C 0.018 3.982 23 C 0.057 3.943 24 C -0.116 4.116 25 C -0.104 4.104 26 C -0.054 4.054 27 C -0.154 4.154 28 C -0.138 4.138 29 H 0.043 0.957 30 H 0.015 0.985 31 H 0.070 0.930 32 H 0.262 0.738 33 H 0.050 0.950 34 H 0.078 0.922 35 H 0.073 0.927 36 H 0.421 0.579 37 H 0.064 0.936 38 H 0.069 0.931 39 H 0.057 0.943 40 H 0.077 0.923 41 H 0.032 0.968 42 H 0.081 0.919 43 H 0.037 0.963 44 H 0.066 0.934 45 H 0.085 0.915 46 H 0.067 0.933 47 H 0.074 0.926 48 H 0.067 0.933 49 H 0.044 0.956 50 H 0.069 0.931 51 H 0.066 0.934 52 H 0.032 0.968 53 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.451 -2.806 5.389 17.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.169 3.831 3 H 0.043 0.957 4 C -0.559 4.559 5 H 0.087 0.913 6 C -0.177 4.177 7 N -0.556 5.556 8 Si 0.775 3.225 9 H -0.184 1.184 10 H -0.215 1.215 11 H -0.209 1.209 12 N -0.840 5.840 13 C -0.045 4.045 14 S 2.804 3.196 15 O -0.993 6.993 16 O -0.997 6.997 17 N -0.874 5.874 18 C -0.001 4.001 19 C -0.010 4.010 20 H 0.072 0.928 21 N -0.269 5.269 22 C -0.130 4.130 23 C -0.071 4.071 24 C -0.154 4.154 25 C -0.142 4.142 26 C -0.054 4.054 27 C -0.212 4.212 28 C -0.195 4.195 29 H 0.062 0.938 30 H 0.034 0.966 31 H 0.088 0.912 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.096 0.904 35 H 0.092 0.908 36 H 0.259 0.741 37 H 0.082 0.918 38 H 0.087 0.913 39 H 0.076 0.924 40 H 0.096 0.904 41 H 0.050 0.950 42 H 0.100 0.900 43 H 0.055 0.945 44 H 0.084 0.916 45 H 0.104 0.896 46 H 0.086 0.914 47 H 0.093 0.907 48 H 0.086 0.914 49 H 0.063 0.937 50 H 0.087 0.913 51 H 0.085 0.915 52 H 0.051 0.949 53 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 15.784 -1.632 5.797 16.894 hybrid contribution 0.148 -1.360 -0.990 1.689 sum 15.933 -2.992 4.808 16.909 Atomic orbital electron populations 1.21956 0.98204 0.99974 0.99808 1.18409 0.91764 0.91424 0.81473 0.95736 1.21532 1.31312 1.12804 0.90236 0.91261 1.25590 0.95183 0.95447 1.01524 1.70025 1.37480 1.23979 1.24094 0.85649 0.78103 0.78914 0.79854 1.18434 1.21451 1.20860 1.57617 1.65203 1.22433 1.38727 1.21364 1.00331 0.80531 1.02248 1.01249 0.73169 0.72871 0.72303 1.93524 1.86507 1.76122 1.43123 1.93541 1.84721 1.34577 1.86877 1.55843 1.29280 1.70377 1.31894 1.21358 0.95540 0.98844 0.84336 1.21728 0.92390 0.97396 0.89532 0.92751 1.61774 1.09524 1.52175 1.03428 1.22454 1.00790 0.94190 0.95538 1.22177 0.85675 0.98423 1.00793 1.21642 1.00663 0.99030 0.94053 1.21635 0.92825 1.02271 0.97440 1.20548 0.96307 0.94774 0.93815 1.22218 1.01134 1.02037 0.95841 1.21869 0.99656 0.95983 1.01957 0.93789 0.96571 0.91152 0.92877 0.93172 0.90351 0.90792 0.74093 0.91817 0.91288 0.92387 0.90411 0.94960 0.90018 0.94499 0.91551 0.89637 0.91386 0.90693 0.91355 0.93718 0.91257 0.91515 0.94876 0.92409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.71 8.97 71.98 0.65 -6.06 16 2 C 0.27 13.21 2.62 44.24 0.12 13.33 16 3 H 0.02 1.37 6.91 -2.39 -0.02 1.35 16 4 C -0.52 -25.37 7.80 25.60 0.20 -25.17 16 5 H 0.07 3.24 7.33 -2.91 -0.02 3.21 16 6 C 0.02 1.14 5.30 84.65 0.45 1.59 16 7 N -0.92 -50.06 11.32 21.45 0.24 -49.81 16 8 Si 0.95 40.14 29.54 68.60 2.03 42.17 16 9 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 10 H -0.29 -12.32 7.11 99.48 0.71 -11.61 16 11 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 12 N -1.00 -40.64 3.12 -520.47 -1.62 -42.26 16 13 C 0.10 3.44 9.28 127.77 1.19 4.62 16 14 S 2.80 109.13 5.95 -56.49 -0.34 108.79 16 15 O -1.01 -40.28 17.21 -128.00 -2.20 -42.48 16 16 O -1.01 -47.28 16.14 -128.00 -2.07 -49.34 16 17 N -1.11 -34.34 3.67 -187.49 -0.69 -35.03 16 18 C 0.13 4.10 5.22 86.38 0.45 4.55 16 19 C 0.10 2.54 1.29 44.94 0.06 2.60 16 20 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 21 N -0.54 -13.71 4.03 -897.19 -3.61 -17.32 16 22 C 0.02 0.49 8.89 127.69 1.14 1.62 16 23 C 0.06 1.08 5.46 86.33 0.47 1.55 16 24 C -0.12 -1.92 5.74 30.65 0.18 -1.75 16 25 C -0.10 -1.79 4.78 30.67 0.15 -1.64 16 26 C -0.05 -1.24 0.54 -52.13 -0.03 -1.27 16 27 C -0.15 -3.45 6.94 71.98 0.50 -2.95 16 28 C -0.14 -3.70 7.66 71.98 0.55 -3.14 16 29 H 0.04 1.94 7.67 -2.38 -0.02 1.93 16 30 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.07 3.71 6.07 -2.39 -0.01 3.69 16 32 H 0.26 13.71 8.31 -92.70 -0.77 12.94 16 33 H 0.05 1.61 8.14 -2.39 -0.02 1.60 16 34 H 0.08 2.68 7.02 -2.39 -0.02 2.67 16 35 H 0.07 2.13 7.79 -2.39 -0.02 2.11 16 36 H 0.42 10.47 6.68 -96.74 -0.65 9.83 16 37 H 0.06 2.46 5.56 -2.38 -0.01 2.45 16 38 H 0.07 2.48 5.81 -2.39 -0.01 2.46 16 39 H 0.06 1.90 6.46 -2.39 -0.02 1.89 16 40 H 0.08 1.83 7.97 -2.39 -0.02 1.81 16 41 H 0.03 0.79 8.11 -2.38 -0.02 0.77 16 42 H 0.08 1.43 8.00 -2.39 -0.02 1.41 16 43 H 0.04 0.66 8.14 -2.38 -0.02 0.64 16 44 H 0.07 1.24 6.58 -2.38 -0.02 1.23 16 45 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 46 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 47 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 48 H 0.07 1.33 8.13 -2.39 -0.02 1.31 16 49 H 0.04 1.22 5.79 -2.39 -0.01 1.21 16 50 H 0.07 1.28 7.39 -2.39 -0.02 1.26 16 51 H 0.07 1.80 6.01 -2.38 -0.01 1.79 16 52 H 0.03 1.09 6.25 -2.39 -0.01 1.08 16 53 H 0.06 1.36 8.14 -2.38 -0.02 1.34 16 Total: -1.00 -62.85 397.79 -1.96 -64.80 By element: Atomic # 1 Polarization: 32.35 SS G_CDS: 0.25 Total: 32.60 kcal Atomic # 6 Polarization: -18.18 SS G_CDS: 6.06 Total: -12.12 kcal Atomic # 7 Polarization: -138.74 SS G_CDS: -5.68 Total: -144.42 kcal Atomic # 8 Polarization: -87.55 SS G_CDS: -4.27 Total: -91.82 kcal Atomic # 14 Polarization: 40.14 SS G_CDS: 2.03 Total: 42.17 kcal Atomic # 16 Polarization: 109.13 SS G_CDS: -0.34 Total: 108.79 kcal Total: -62.85 -1.96 -64.80 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337779633.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.821 kcal (2) G-P(sol) polarization free energy of solvation -62.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds