Wall clock time and date at job start Wed Apr 1 2020 04:55:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52988 * 1 3 3 H 1.08998 * 109.47180 * 2 1 4 4 C 1.50705 * 109.47112 * 240.00468 * 2 1 3 5 5 H 1.08008 * 119.99502 * 239.99833 * 4 2 1 6 6 C 1.37870 * 120.00015 * 59.99621 * 4 2 1 7 7 N 1.31512 * 120.00193 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99819 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47247 * 90.00009 * 8 6 4 10 10 H 1.48499 * 109.47009 * 210.00037 * 8 6 4 11 11 H 1.48499 * 109.47325 * 330.00050 * 8 6 4 12 12 N 1.46502 * 109.47599 * 120.00307 * 2 1 3 13 13 C 1.46502 * 119.99950 * 59.99814 * 12 2 1 14 14 S 1.65603 * 119.99913 * 240.00429 * 12 2 1 15 15 O 1.42101 * 106.40300 * 336.45095 * 14 12 2 16 16 O 1.42106 * 106.39604 * 203.53558 * 14 12 2 17 17 N 1.65598 * 107.22065 * 89.99772 * 14 12 2 18 18 C 1.46492 * 120.00333 * 64.99435 * 17 14 12 19 19 C 1.52998 * 109.47390 * 163.59467 * 18 17 14 20 20 H 1.08999 * 109.46709 * 172.47440 * 19 18 17 21 21 N 1.46847 * 109.46150 * 52.49782 * 19 18 17 22 22 C 1.46896 * 111.00082 * 54.15315 * 21 19 18 23 23 C 1.46843 * 111.20051 * 178.25350 * 21 19 18 24 24 C 1.53045 * 109.52081 * 61.73947 * 23 21 19 25 25 C 1.53118 * 109.28049 * 300.82164 * 24 23 21 26 26 C 1.53043 * 109.45563 * 292.38597 * 19 18 17 27 27 C 1.52998 * 109.45198 * 59.21310 * 26 19 18 28 28 C 1.53003 * 109.55700 * 299.09868 * 26 19 18 29 29 H 1.09007 * 109.47190 * 299.99399 * 1 2 3 30 30 H 1.09002 * 109.47812 * 59.99840 * 1 2 3 31 31 H 1.08998 * 109.47180 * 179.97438 * 1 2 3 32 32 H 0.97001 * 119.99729 * 179.97438 * 7 6 4 33 33 H 1.09008 * 109.46929 * 270.00554 * 13 12 2 34 34 H 1.09000 * 109.47274 * 30.00129 * 13 12 2 35 35 H 1.09001 * 109.47152 * 150.00498 * 13 12 2 36 36 H 0.96999 * 119.99809 * 244.99820 * 17 14 12 37 37 H 1.09009 * 109.46983 * 43.59729 * 18 17 14 38 38 H 1.08996 * 109.47408 * 283.59838 * 18 17 14 39 39 H 1.09001 * 109.47275 * 177.23004 * 22 21 19 40 40 H 1.09004 * 109.47626 * 297.22806 * 22 21 19 41 41 H 1.09004 * 109.46880 * 57.23072 * 22 21 19 42 42 H 1.09000 * 109.46124 * 301.72608 * 23 21 19 43 43 H 1.08996 * 109.46307 * 181.75646 * 23 21 19 44 44 H 1.08997 * 109.50031 * 180.87967 * 24 23 21 45 45 H 1.09000 * 109.50358 * 60.76788 * 24 23 21 46 46 H 1.08994 * 109.52505 * 177.56269 * 25 24 23 47 47 H 1.08999 * 109.51971 * 297.69072 * 25 24 23 48 48 H 1.09001 * 109.47054 * 171.32504 * 27 26 19 49 49 H 1.08999 * 109.47259 * 291.32165 * 27 26 19 50 50 H 1.09002 * 109.47033 * 51.32682 * 27 26 19 51 51 H 1.09002 * 109.46433 * 300.16794 * 28 26 19 52 52 H 1.08999 * 109.47446 * 60.16255 * 28 26 19 53 53 H 1.09000 * 109.47451 * 180.17033 * 28 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0322 -0.7103 -1.2306 5 1 2.6532 -1.5885 -1.1314 6 6 1.6991 -0.2392 -2.4827 7 7 0.9434 0.8303 -2.6033 8 14 2.3212 -1.1202 -4.0080 9 1 1.3426 -2.1616 -4.4119 10 1 2.4864 -0.1411 -5.1122 11 1 3.6292 -1.7581 -3.7123 12 7 2.0183 -0.6907 1.1961 13 6 1.6645 -2.0933 1.4279 14 16 2.9704 0.1142 2.2862 15 8 3.5794 1.1829 1.5748 16 8 3.7118 -0.8790 2.9813 17 7 1.9607 0.8089 3.3998 18 6 1.1510 -0.0353 4.2817 19 6 0.6376 0.7993 5.4567 20 1 -0.0708 0.2100 6.0388 21 7 -0.0307 2.0033 4.9465 22 6 -1.0794 1.6535 3.9792 23 6 -0.5755 2.8134 6.0434 24 6 0.5656 3.2799 6.9503 25 6 1.2993 2.0577 7.5092 26 6 1.8147 1.2045 6.3469 27 6 2.8198 2.0141 5.5254 28 6 2.4962 -0.0500 6.8971 29 1 -0.3634 0.5138 0.8901 30 1 -0.3635 0.5138 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 0.7093 1.1619 -3.4844 33 1 0.7375 -2.1445 1.9993 34 1 1.5295 -2.5969 0.4707 35 1 2.4629 -2.5820 1.9862 36 1 1.9054 1.7749 3.4682 37 1 1.7605 -0.8568 4.6584 38 1 0.3049 -0.4368 3.7240 39 1 -1.5909 2.5595 3.6543 40 1 -0.6290 1.1616 3.1170 41 1 -1.7964 0.9798 4.4485 42 1 -1.2782 2.2145 6.6228 43 1 -1.0910 3.6814 5.6325 44 1 0.1592 3.8681 7.7731 45 1 1.2615 3.8904 6.3748 46 1 2.1395 2.3855 8.1211 47 1 0.6136 1.4681 8.1177 48 1 3.5775 2.4324 6.1880 49 1 3.2973 1.3640 4.7922 50 1 2.3008 2.8227 5.0107 51 1 1.7787 -0.6269 7.4807 52 1 2.8629 -0.6570 6.0694 53 1 3.3324 0.2401 7.5333 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337779634.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:55:00 Heat of formation + Delta-G solvation = -86.201595 kcal Electronic energy + Delta-G solvation = -32372.723332 eV Core-core repulsion = 28405.582521 eV Total energy + Delta-G solvation = -3967.140810 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.203 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.26401 -38.26099 -37.84694 -36.82985 -36.14467 -35.83316 -34.49515 -32.50876 -30.88965 -29.08291 -28.04582 -27.38246 -27.19666 -26.96334 -25.86932 -22.59709 -22.36205 -22.23656 -20.18193 -19.39533 -18.79752 -18.56803 -18.04987 -17.23114 -16.93611 -16.62958 -16.32859 -15.94622 -15.60212 -15.27044 -15.01082 -14.95080 -14.78293 -14.41021 -14.17559 -13.79610 -13.71542 -13.58669 -13.50662 -13.41471 -13.17952 -13.11972 -13.06780 -12.99271 -12.94196 -12.81119 -12.66111 -12.58723 -12.55306 -12.29352 -12.20250 -12.11455 -12.04559 -11.88106 -11.80359 -11.33713 -11.13721 -11.08040 -10.97602 -10.48484 -10.07044 -9.59941 -9.16737 -8.09920 -6.23224 -0.22909 1.42153 1.44617 1.53874 2.12205 2.44570 2.69671 3.00379 3.18250 3.49923 3.66392 3.74324 3.95908 4.14897 4.18963 4.25143 4.33860 4.45021 4.49944 4.54568 4.59119 4.65004 4.68728 4.77042 4.78627 4.83547 4.87368 4.91355 4.97503 4.98190 5.02808 5.04956 5.09929 5.15520 5.19863 5.20327 5.21981 5.25980 5.30788 5.38101 5.42864 5.52832 5.63231 5.65318 5.74457 5.91274 6.13023 6.18996 6.23693 6.32843 6.35764 6.84402 7.45423 8.93982 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018986 B = 0.003561 C = 0.003295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.430191 B = 7860.648132 C = 8496.096138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.276 3.724 3 H 0.021 0.979 4 C -0.539 4.539 5 H 0.056 0.944 6 C 0.018 3.982 7 N -0.912 5.912 8 Si 0.954 3.046 9 H -0.269 1.269 10 H -0.284 1.284 11 H -0.276 1.276 12 N -0.997 5.997 13 C 0.092 3.908 14 S 2.791 3.209 15 O -1.023 7.023 16 O -1.009 7.009 17 N -1.103 6.103 18 C 0.119 3.881 19 C 0.096 3.904 20 H 0.067 0.933 21 N -0.546 5.546 22 C 0.021 3.979 23 C 0.058 3.942 24 C -0.118 4.118 25 C -0.104 4.104 26 C -0.053 4.053 27 C -0.147 4.147 28 C -0.148 4.148 29 H 0.036 0.964 30 H 0.063 0.937 31 H 0.040 0.960 32 H 0.264 0.736 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.425 0.575 37 H 0.085 0.915 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.063 0.937 41 H 0.034 0.966 42 H 0.038 0.962 43 H 0.077 0.923 44 H 0.080 0.920 45 H 0.063 0.937 46 H 0.069 0.931 47 H 0.068 0.932 48 H 0.051 0.949 49 H 0.042 0.958 50 H 0.066 0.934 51 H 0.068 0.932 52 H 0.049 0.951 53 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.080 0.661 21.893 22.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.171 3.829 3 H 0.039 0.961 4 C -0.579 4.579 5 H 0.074 0.926 6 C -0.181 4.181 7 N -0.551 5.551 8 Si 0.780 3.220 9 H -0.194 1.194 10 H -0.210 1.210 11 H -0.201 1.201 12 N -0.838 5.838 13 C -0.054 4.054 14 S 2.800 3.200 15 O -1.007 7.007 16 O -0.993 6.993 17 N -0.870 5.870 18 C -0.008 4.008 19 C -0.014 4.014 20 H 0.084 0.916 21 N -0.271 5.271 22 C -0.127 4.127 23 C -0.069 4.069 24 C -0.155 4.155 25 C -0.142 4.142 26 C -0.053 4.053 27 C -0.205 4.205 28 C -0.205 4.205 29 H 0.055 0.945 30 H 0.082 0.918 31 H 0.059 0.941 32 H 0.073 0.927 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.265 0.735 37 H 0.103 0.897 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.082 0.918 41 H 0.053 0.947 42 H 0.057 0.943 43 H 0.095 0.905 44 H 0.098 0.902 45 H 0.082 0.918 46 H 0.087 0.913 47 H 0.087 0.913 48 H 0.070 0.930 49 H 0.061 0.939 50 H 0.084 0.916 51 H 0.087 0.913 52 H 0.068 0.932 53 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.854 0.904 21.501 22.061 hybrid contribution -0.567 -0.335 -0.962 1.166 sum -5.421 0.569 20.539 21.250 Atomic orbital electron populations 1.21861 0.96626 1.00024 1.00369 1.18344 0.92316 0.91139 0.81087 0.96105 1.21676 1.31597 1.13017 0.91614 0.92617 1.25611 0.95256 0.95703 1.01572 1.69979 1.37329 1.23582 1.24250 0.85627 0.78771 0.78460 0.79189 1.19423 1.20987 1.20060 1.57536 1.69898 1.21030 1.35383 1.21480 1.00489 0.80841 1.02571 1.01317 0.73927 0.72306 0.72422 1.93543 1.76178 1.57501 1.73496 1.93494 1.70064 1.61240 1.74469 1.55894 1.61625 1.18564 1.50907 1.21569 0.94940 0.93152 0.91092 1.21769 0.95578 0.90368 0.93646 0.91562 1.61741 1.29700 1.19620 1.16037 1.22427 0.93221 1.01077 0.95970 1.22116 0.96171 0.97111 0.91511 1.21625 0.97391 0.97789 0.98716 1.21628 1.00147 0.96196 0.96229 1.20531 0.94137 0.95857 0.94800 1.22168 0.98412 1.00145 0.99731 1.21976 1.00839 0.96749 1.00966 0.94478 0.91794 0.94092 0.92705 0.91328 0.91173 0.91123 0.73507 0.89686 0.91217 0.91188 0.91821 0.94713 0.94346 0.90497 0.90184 0.91846 0.91261 0.91339 0.93015 0.93948 0.91566 0.91252 0.93158 0.91991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.72 8.97 71.98 0.65 -5.08 16 2 C 0.28 13.59 2.62 44.24 0.12 13.71 16 3 H 0.02 1.19 6.91 -2.39 -0.02 1.18 16 4 C -0.54 -29.44 7.99 25.60 0.20 -29.23 16 5 H 0.06 3.03 7.33 -2.91 -0.02 3.01 16 6 C 0.02 1.01 5.30 84.65 0.45 1.46 16 7 N -0.91 -51.47 11.32 21.44 0.24 -51.23 16 8 Si 0.95 43.59 29.54 68.60 2.03 45.61 16 9 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 10 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 11 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 12 N -1.00 -40.81 3.12 -520.44 -1.62 -42.43 16 13 C 0.09 3.11 9.66 127.77 1.23 4.34 16 14 S 2.79 110.29 5.99 -56.49 -0.34 109.96 16 15 O -1.02 -50.13 16.70 -128.00 -2.14 -52.27 16 16 O -1.01 -41.03 16.19 -128.00 -2.07 -43.10 16 17 N -1.10 -32.39 3.34 -187.50 -0.63 -33.02 16 18 C 0.12 2.72 4.85 86.38 0.42 3.14 16 19 C 0.10 1.79 1.56 44.94 0.07 1.86 16 20 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 21 N -0.55 -10.41 3.03 -897.16 -2.72 -13.13 16 22 C 0.02 0.41 8.97 127.69 1.15 1.56 16 23 C 0.06 0.89 5.46 86.33 0.47 1.36 16 24 C -0.12 -1.65 5.75 30.65 0.18 -1.47 16 25 C -0.10 -1.47 4.78 30.67 0.15 -1.32 16 26 C -0.05 -0.95 0.55 -52.13 -0.03 -0.98 16 27 C -0.15 -3.32 6.32 71.98 0.46 -2.86 16 28 C -0.15 -2.58 8.15 71.98 0.59 -1.99 16 29 H 0.04 1.40 7.90 -2.38 -0.02 1.38 16 30 H 0.06 3.21 6.07 -2.39 -0.01 3.20 16 31 H 0.04 1.69 7.67 -2.39 -0.02 1.67 16 32 H 0.26 14.15 8.31 -92.71 -0.77 13.38 16 33 H 0.07 1.84 8.14 -2.38 -0.02 1.82 16 34 H 0.07 2.54 7.02 -2.39 -0.02 2.53 16 35 H 0.07 2.25 7.02 -2.39 -0.02 2.23 16 36 H 0.43 12.35 5.81 -96.75 -0.56 11.79 16 37 H 0.09 1.93 5.67 -2.38 -0.01 1.92 16 38 H 0.07 1.50 6.85 -2.39 -0.02 1.48 16 39 H 0.07 1.33 8.04 -2.39 -0.02 1.31 16 40 H 0.06 1.50 6.13 -2.39 -0.01 1.48 16 41 H 0.03 0.59 8.14 -2.38 -0.02 0.57 16 42 H 0.04 0.53 8.14 -2.39 -0.02 0.51 16 43 H 0.08 1.14 8.05 -2.39 -0.02 1.12 16 44 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 45 H 0.06 1.05 6.79 -2.39 -0.02 1.04 16 46 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 47 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 48 H 0.05 1.06 8.13 -2.39 -0.02 1.04 16 49 H 0.04 1.14 5.76 -2.39 -0.01 1.13 16 50 H 0.07 1.55 5.37 -2.39 -0.01 1.53 16 51 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 52 H 0.05 1.07 6.31 -2.39 -0.02 1.05 16 53 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 Total: -1.00 -67.31 395.90 -0.83 -68.14 By element: Atomic # 1 Polarization: 26.65 SS G_CDS: 0.33 Total: 26.98 kcal Atomic # 6 Polarization: -21.60 SS G_CDS: 6.09 Total: -15.51 kcal Atomic # 7 Polarization: -135.08 SS G_CDS: -4.72 Total: -139.81 kcal Atomic # 8 Polarization: -91.16 SS G_CDS: -4.21 Total: -95.37 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.61 kcal Atomic # 16 Polarization: 110.29 SS G_CDS: -0.34 Total: 109.96 kcal Total: -67.31 -0.83 -68.14 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337779634.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.061 kcal (2) G-P(sol) polarization free energy of solvation -67.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds