Wall clock time and date at job start Wed Apr 1 2020 04:54:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08992 * 109.47220 * 2 1 4 4 C 1.50697 * 109.47060 * 239.99655 * 2 1 3 5 5 H 1.08001 * 120.00298 * 239.99953 * 4 2 1 6 6 C 1.37876 * 119.99740 * 60.00265 * 4 2 1 7 7 N 1.31511 * 120.00044 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99951 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.47124 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.47259 * 120.00099 * 8 6 4 11 11 H 1.48498 * 109.47221 * 240.00138 * 8 6 4 12 12 N 1.46502 * 109.46769 * 120.00046 * 2 1 3 13 13 C 1.46505 * 120.00356 * 60.00145 * 12 2 1 14 14 S 1.65604 * 119.99973 * 239.99902 * 12 2 1 15 15 O 1.42099 * 106.40063 * 336.46334 * 14 12 2 16 16 O 1.42102 * 106.40436 * 203.54261 * 14 12 2 17 17 N 1.65597 * 107.21602 * 90.00131 * 14 12 2 18 18 C 1.46498 * 120.00277 * 64.72783 * 17 14 12 19 19 C 1.53003 * 109.47457 * 161.67601 * 18 17 14 20 20 N 1.46900 * 109.47157 * 293.89442 * 19 18 17 21 21 C 1.46909 * 110.99890 * 305.94869 * 20 19 18 22 22 C 1.46896 * 111.00215 * 69.90465 * 20 19 18 23 23 C 1.52997 * 109.46909 * 173.89349 * 19 18 17 24 24 C 1.53001 * 109.47188 * 299.99820 * 23 19 18 25 25 C 1.53000 * 109.47343 * 300.00475 * 24 23 19 26 26 C 1.52992 * 109.47111 * 59.99862 * 25 24 23 27 27 C 1.53000 * 109.46878 * 53.89329 * 19 18 17 28 28 H 1.09002 * 109.47464 * 300.00012 * 1 2 3 29 29 H 1.09000 * 109.47237 * 59.99989 * 1 2 3 30 30 H 1.09001 * 109.47032 * 179.97438 * 1 2 3 31 31 H 0.97005 * 120.00203 * 179.97438 * 7 6 4 32 32 H 1.08993 * 109.46931 * 270.00083 * 13 12 2 33 33 H 1.09000 * 109.46495 * 30.00008 * 13 12 2 34 34 H 1.08997 * 109.47021 * 149.99485 * 13 12 2 35 35 H 0.97003 * 120.00130 * 245.00222 * 17 14 12 36 36 H 1.09004 * 109.47074 * 281.68232 * 18 17 14 37 37 H 1.08999 * 109.46817 * 41.67673 * 18 17 14 38 38 H 1.09000 * 109.46862 * 66.27829 * 21 20 19 39 39 H 1.09000 * 109.46748 * 186.28187 * 21 20 19 40 40 H 1.09001 * 109.47136 * 306.28245 * 21 20 19 41 41 H 1.09001 * 109.47095 * 51.76293 * 22 20 19 42 42 H 1.08999 * 109.47386 * 171.76969 * 22 20 19 43 43 H 1.09007 * 109.46810 * 291.76562 * 22 20 19 44 44 H 1.08996 * 109.47691 * 60.00330 * 23 19 18 45 45 H 1.09006 * 109.46906 * 180.02562 * 23 19 18 46 46 H 1.09006 * 109.47054 * 180.02562 * 24 23 19 47 47 H 1.09006 * 109.46988 * 60.00306 * 24 23 19 48 48 H 1.08999 * 109.46615 * 299.99602 * 25 24 23 49 49 H 1.09006 * 109.46851 * 179.97438 * 25 24 23 50 50 H 1.09004 * 109.47544 * 180.02562 * 26 25 24 51 51 H 1.08999 * 109.47592 * 60.00339 * 26 25 24 52 52 H 1.08999 * 109.46615 * 179.97438 * 27 19 18 53 53 H 1.09006 * 109.47151 * 300.00035 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2394 -2.4826 7 7 0.9428 0.8296 -2.6033 8 14 2.3224 -1.1196 -4.0079 9 1 3.1473 -2.2865 -3.6037 10 1 1.1677 -1.5867 -4.8164 11 1 3.1472 -0.1859 -4.8160 12 7 2.0183 -0.6906 1.1962 13 6 1.6643 -2.0933 1.4281 14 16 2.9703 0.1141 2.2863 15 8 3.5793 1.1829 1.5749 16 8 3.7118 -0.8790 2.9816 17 7 1.9606 0.8090 3.3998 18 6 1.1463 -0.0352 4.2776 19 6 0.6726 0.7856 5.4789 20 7 1.8297 1.1605 6.3026 21 6 2.6147 -0.0232 6.6776 22 6 2.6675 2.1512 5.6137 23 6 -0.2998 -0.0488 6.3150 24 6 -1.5049 -0.4393 5.4571 25 6 -2.2112 0.8252 4.9641 26 6 -1.2388 1.6595 4.1279 27 6 -0.0337 2.0501 4.9859 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 0.7087 1.1612 -3.4844 32 1 0.7375 -2.1444 1.9993 33 1 1.5295 -2.5969 0.4708 34 1 2.4628 -2.5819 1.9864 35 1 1.9052 1.7750 3.4682 36 1 0.2816 -0.4049 3.7264 37 1 1.7426 -0.8784 4.6261 38 1 3.0659 -0.4575 5.7854 39 1 3.3989 0.2674 7.3767 40 1 1.9618 -0.7578 7.1489 41 1 2.0468 2.9829 5.2802 42 1 3.4317 2.5197 6.2981 43 1 3.1456 1.6861 4.7516 44 1 0.2034 -0.9496 6.6662 45 1 -0.6376 0.5361 7.1706 46 1 -2.1979 -1.0333 6.0529 47 1 -1.1674 -1.0240 4.6012 48 1 -2.5487 1.4099 5.8199 49 1 -3.0696 0.5469 4.3525 50 1 -1.7419 2.5606 3.7770 51 1 -0.9014 1.0748 3.2721 52 1 -0.3715 2.6345 5.8417 53 1 0.6591 2.6445 4.3901 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337780443.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:54:08 Heat of formation + Delta-G solvation = -84.169876 kcal Electronic energy + Delta-G solvation = -32625.642046 eV Core-core repulsion = 28658.589337 eV Total energy + Delta-G solvation = -3967.052708 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.203 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.48409 -38.37131 -37.90846 -36.98286 -36.84367 -35.08165 -34.53383 -32.03223 -30.93903 -30.77482 -28.63914 -27.25195 -27.05972 -26.45201 -24.86433 -23.22616 -22.64864 -21.74425 -20.37665 -19.70184 -18.85560 -18.62407 -18.04104 -17.60693 -17.20257 -16.74710 -16.30741 -16.03715 -15.65277 -15.23976 -15.01367 -14.91747 -14.65969 -14.59924 -14.44645 -14.11260 -13.83944 -13.73645 -13.52975 -13.44571 -13.33407 -13.22495 -13.16175 -13.04278 -13.02106 -12.74007 -12.68950 -12.63888 -12.32474 -12.28425 -12.19754 -12.14744 -12.12679 -11.92000 -11.88429 -11.31009 -11.17605 -11.12435 -10.77073 -10.52614 -10.46150 -9.69831 -9.11551 -8.13262 -6.26629 -0.35897 1.39882 1.43021 1.53163 1.99825 2.41701 2.57859 2.94437 3.15239 3.38146 3.67459 3.71904 4.00154 4.04414 4.09989 4.26104 4.33344 4.35162 4.41263 4.50010 4.53648 4.59809 4.65458 4.68589 4.72352 4.73409 4.75472 4.78942 4.90577 4.98457 5.01184 5.03070 5.04404 5.09857 5.14516 5.15984 5.22788 5.24834 5.34868 5.36354 5.43411 5.45952 5.59998 5.63931 5.66678 5.85448 5.97156 6.09404 6.15022 6.16408 6.28983 6.80901 7.42275 8.91009 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015389 B = 0.003979 C = 0.003575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1819.090897 B = 7035.265135 C = 7829.620343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.275 3.725 3 H 0.021 0.979 4 C -0.539 4.539 5 H 0.056 0.944 6 C 0.019 3.981 7 N -0.912 5.912 8 Si 0.954 3.046 9 H -0.270 1.270 10 H -0.274 1.274 11 H -0.284 1.284 12 N -0.994 5.994 13 C 0.092 3.908 14 S 2.790 3.210 15 O -1.020 7.020 16 O -1.009 7.009 17 N -1.114 6.114 18 C 0.085 3.915 19 C 0.111 3.889 20 N -0.525 5.525 21 C 0.009 3.991 22 C -0.004 4.004 23 C -0.096 4.096 24 C -0.123 4.123 25 C -0.114 4.114 26 C -0.125 4.125 27 C -0.107 4.107 28 H 0.035 0.965 29 H 0.065 0.935 30 H 0.041 0.959 31 H 0.264 0.736 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.418 0.582 36 H 0.081 0.919 37 H 0.076 0.924 38 H 0.019 0.981 39 H 0.073 0.927 40 H 0.086 0.914 41 H 0.083 0.917 42 H 0.073 0.927 43 H 0.023 0.977 44 H 0.071 0.929 45 H 0.081 0.919 46 H 0.079 0.921 47 H 0.059 0.941 48 H 0.071 0.929 49 H 0.063 0.937 50 H 0.065 0.935 51 H 0.053 0.947 52 H 0.082 0.918 53 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.889 -1.063 19.840 21.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.171 3.829 3 H 0.039 0.961 4 C -0.579 4.579 5 H 0.074 0.926 6 C -0.181 4.181 7 N -0.551 5.551 8 Si 0.780 3.220 9 H -0.195 1.195 10 H -0.199 1.199 11 H -0.211 1.211 12 N -0.836 5.836 13 C -0.054 4.054 14 S 2.800 3.200 15 O -1.004 7.004 16 O -0.992 6.992 17 N -0.880 5.880 18 C -0.042 4.042 19 C 0.020 3.980 20 N -0.247 5.247 21 C -0.139 4.139 22 C -0.153 4.153 23 C -0.135 4.135 24 C -0.161 4.161 25 C -0.152 4.152 26 C -0.163 4.163 27 C -0.145 4.145 28 H 0.054 0.946 29 H 0.083 0.917 30 H 0.060 0.940 31 H 0.074 0.926 32 H 0.087 0.913 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.257 0.743 36 H 0.099 0.901 37 H 0.094 0.906 38 H 0.037 0.963 39 H 0.092 0.908 40 H 0.104 0.896 41 H 0.101 0.899 42 H 0.092 0.908 43 H 0.041 0.959 44 H 0.089 0.911 45 H 0.100 0.900 46 H 0.098 0.902 47 H 0.078 0.922 48 H 0.089 0.911 49 H 0.082 0.918 50 H 0.084 0.916 51 H 0.072 0.928 52 H 0.101 0.899 53 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -6.149 -0.893 20.136 21.072 hybrid contribution 0.580 -0.152 -2.080 2.165 sum -5.568 -1.045 18.056 18.924 Atomic orbital electron populations 1.21867 0.96560 1.00142 1.00377 1.18378 0.92365 0.91139 0.81045 0.96072 1.21678 1.31624 1.13034 0.91522 0.92590 1.25613 0.95193 0.95702 1.01592 1.69978 1.37240 1.23644 1.24280 0.85569 0.78301 0.78594 0.79537 1.19477 1.19893 1.21053 1.57501 1.69851 1.21036 1.35250 1.21485 1.00439 0.80763 1.02693 1.01373 0.73858 0.72408 0.72408 1.93549 1.76067 1.57430 1.73345 1.93497 1.70003 1.61163 1.74520 1.56143 1.61974 1.17970 1.51900 1.22293 0.95270 0.94059 0.92582 1.21328 0.91391 0.95402 0.89921 1.62369 1.08594 1.12416 1.41355 1.22596 0.98368 0.93001 0.99895 1.22897 0.97913 0.96392 0.98066 1.21514 0.94646 0.99295 0.97998 1.21648 0.96994 0.97744 0.99705 1.21501 0.97602 0.96369 0.99688 1.21611 0.96078 1.00371 0.98274 1.21668 0.96787 0.96003 1.00029 0.94605 0.91659 0.93984 0.92639 0.91346 0.90931 0.91242 0.74300 0.90149 0.90573 0.96263 0.90811 0.89558 0.89878 0.90803 0.95855 0.91083 0.89997 0.90201 0.92218 0.91057 0.91846 0.91594 0.92782 0.89920 0.92392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.72 8.97 71.98 0.65 -5.07 16 2 C 0.28 13.45 2.62 44.24 0.12 13.57 16 3 H 0.02 1.20 6.91 -2.39 -0.02 1.18 16 4 C -0.54 -29.17 7.99 25.60 0.20 -28.96 16 5 H 0.06 3.03 7.33 -2.91 -0.02 3.00 16 6 C 0.02 1.03 5.30 84.65 0.45 1.48 16 7 N -0.91 -51.03 11.32 21.45 0.24 -50.79 16 8 Si 0.95 43.25 29.54 68.60 2.03 45.28 16 9 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 10 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 11 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 12 N -0.99 -40.54 3.12 -520.46 -1.62 -42.16 16 13 C 0.09 3.11 9.66 127.77 1.23 4.35 16 14 S 2.79 109.55 6.14 -56.49 -0.35 109.20 16 15 O -1.02 -49.14 16.70 -128.00 -2.14 -51.28 16 16 O -1.01 -41.16 16.18 -128.00 -2.07 -43.23 16 17 N -1.11 -32.27 3.79 -187.49 -0.71 -32.98 16 18 C 0.09 2.00 4.10 86.38 0.35 2.35 16 19 C 0.11 2.10 0.43 3.53 0.00 2.10 16 20 N -0.53 -10.50 4.83 -898.66 -4.34 -14.84 16 21 C 0.01 0.19 8.69 127.69 1.11 1.30 16 22 C 0.00 -0.09 8.01 127.69 1.02 0.93 16 23 C -0.10 -1.44 4.67 30.59 0.14 -1.30 16 24 C -0.12 -1.75 5.65 30.59 0.17 -1.58 16 25 C -0.11 -1.71 5.92 30.59 0.18 -1.53 16 26 C -0.13 -2.33 5.65 30.59 0.17 -2.16 16 27 C -0.11 -1.97 3.94 30.60 0.12 -1.84 16 28 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.06 3.26 6.07 -2.39 -0.01 3.24 16 30 H 0.04 1.72 7.67 -2.39 -0.02 1.71 16 31 H 0.26 14.02 8.31 -92.70 -0.77 13.25 16 32 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.07 2.63 7.02 -2.39 -0.02 2.61 16 34 H 0.07 2.23 7.02 -2.39 -0.02 2.21 16 35 H 0.42 11.29 5.04 -96.74 -0.49 10.81 16 36 H 0.08 1.81 4.84 -2.38 -0.01 1.80 16 37 H 0.08 1.86 5.67 -2.39 -0.01 1.85 16 38 H 0.02 0.47 6.46 -2.39 -0.02 0.45 16 39 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.09 1.40 6.20 -2.39 -0.01 1.38 16 41 H 0.08 1.60 5.64 -2.39 -0.01 1.58 16 42 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 43 H 0.02 0.60 5.46 -2.38 -0.01 0.58 16 44 H 0.07 1.00 6.43 -2.39 -0.02 0.99 16 45 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 46 H 0.08 0.92 8.14 -2.38 -0.02 0.90 16 47 H 0.06 0.95 6.30 -2.38 -0.02 0.94 16 48 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 49 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 50 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 51 H 0.05 1.21 6.57 -2.39 -0.02 1.20 16 52 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 53 H 0.06 1.15 4.55 -2.38 -0.01 1.14 16 Total: -1.00 -66.99 389.43 -2.61 -69.60 By element: Atomic # 1 Polarization: 27.14 SS G_CDS: 0.43 Total: 27.56 kcal Atomic # 6 Polarization: -22.30 SS G_CDS: 5.93 Total: -16.37 kcal Atomic # 7 Polarization: -134.33 SS G_CDS: -6.44 Total: -140.77 kcal Atomic # 8 Polarization: -90.30 SS G_CDS: -4.21 Total: -94.51 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.28 kcal Atomic # 16 Polarization: 109.55 SS G_CDS: -0.35 Total: 109.20 kcal Total: -66.99 -2.61 -69.60 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337780443.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.565 kcal (2) G-P(sol) polarization free energy of solvation -66.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds