Wall clock time and date at job start Wed Apr 1 2020 04:54:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.47059 * 2 1 4 4 C 1.50704 * 109.46911 * 120.00118 * 2 1 3 5 5 H 1.07991 * 120.00076 * 119.99886 * 4 2 1 6 6 C 1.37881 * 119.99476 * 299.99565 * 4 2 1 7 7 N 1.31505 * 120.00316 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99439 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47046 * 180.02562 * 8 6 4 10 10 H 1.48492 * 109.47578 * 300.00327 * 8 6 4 11 11 H 1.48501 * 109.47169 * 60.00593 * 8 6 4 12 12 N 1.46499 * 109.47097 * 239.99583 * 2 1 3 13 13 C 1.46498 * 120.00187 * 300.00708 * 12 2 1 14 14 S 1.65603 * 119.99706 * 120.00372 * 12 2 1 15 15 O 1.42107 * 106.40174 * 203.54021 * 14 12 2 16 16 O 1.42099 * 106.40202 * 336.45633 * 14 12 2 17 17 N 1.65596 * 107.21760 * 90.00205 * 14 12 2 18 18 C 1.46502 * 120.00290 * 65.00227 * 17 14 12 19 19 C 1.52996 * 109.47321 * 161.61551 * 18 17 14 20 20 N 1.46901 * 109.47075 * 293.86600 * 19 18 17 21 21 C 1.46906 * 111.00068 * 305.89867 * 20 19 18 22 22 C 1.46906 * 111.00036 * 69.84754 * 20 19 18 23 23 C 1.52998 * 109.47132 * 173.86525 * 19 18 17 24 24 C 1.52990 * 109.47271 * 299.99973 * 23 19 18 25 25 C 1.53003 * 109.47215 * 299.99964 * 24 23 19 26 26 C 1.52998 * 109.46972 * 59.99852 * 25 24 23 27 27 C 1.52998 * 109.47460 * 300.00197 * 26 25 24 28 28 H 1.08997 * 109.46926 * 300.00471 * 1 2 3 29 29 H 1.09000 * 109.46583 * 60.00111 * 1 2 3 30 30 H 1.08999 * 109.47059 * 179.97438 * 1 2 3 31 31 H 0.97003 * 120.00478 * 179.97438 * 7 6 4 32 32 H 1.08989 * 109.47679 * 89.99876 * 13 12 2 33 33 H 1.08999 * 109.47048 * 209.99972 * 13 12 2 34 34 H 1.08999 * 109.47097 * 329.99516 * 13 12 2 35 35 H 0.97001 * 120.00020 * 244.99320 * 17 14 12 36 36 H 1.08998 * 109.46671 * 281.61760 * 18 17 14 37 37 H 1.08999 * 109.47071 * 41.60822 * 18 17 14 38 38 H 1.09005 * 109.46761 * 66.22810 * 21 20 19 39 39 H 1.08993 * 109.47024 * 186.23040 * 21 20 19 40 40 H 1.08995 * 109.46667 * 306.23093 * 21 20 19 41 41 H 1.08999 * 109.46705 * 51.74784 * 22 20 19 42 42 H 1.08994 * 109.46903 * 171.73943 * 22 20 19 43 43 H 1.08993 * 109.47494 * 291.74555 * 22 20 19 44 44 H 1.09002 * 109.46939 * 59.99970 * 23 19 18 45 45 H 1.09000 * 109.47118 * 179.97438 * 23 19 18 46 46 H 1.09004 * 109.47419 * 179.97438 * 24 23 19 47 47 H 1.09000 * 109.47224 * 59.99851 * 24 23 19 48 48 H 1.09000 * 109.46932 * 300.00065 * 25 24 23 49 49 H 1.09001 * 109.47234 * 179.97438 * 25 24 23 50 50 H 1.09002 * 109.46939 * 180.02562 * 26 25 24 51 51 H 1.09000 * 109.47118 * 60.00327 * 26 25 24 52 52 H 1.09000 * 109.47061 * 300.00165 * 27 26 25 53 53 H 1.08997 * 109.47281 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3212 -1.1203 4.0080 9 1 1.8259 -0.4205 5.2205 10 1 1.8257 -2.5201 4.0078 11 1 3.8063 -1.1209 4.0083 12 7 2.0184 -0.6907 -1.1961 13 6 1.6643 -2.0932 -1.4280 14 16 2.9705 0.1141 -2.2862 15 8 2.8229 -0.5647 -3.5259 16 8 2.6904 1.4972 -2.1193 17 7 4.5438 -0.1044 -1.8179 18 6 5.1358 -1.4443 -1.8414 19 6 6.6612 -1.3284 -1.8184 20 7 7.1236 -0.7030 -3.0646 21 6 6.6117 -1.4247 -4.2373 22 6 6.7457 0.7158 -3.1135 23 6 7.2767 -2.7231 -1.6887 24 6 6.7952 -3.3744 -0.3908 25 6 7.2234 -2.5151 0.8005 26 6 6.6079 -1.1204 0.6708 27 6 7.0895 -0.4691 -0.6272 28 1 -0.3633 0.5139 0.8899 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 0.7082 1.1610 3.4843 32 1 0.7376 -2.1444 -1.9993 33 1 2.4628 -2.5820 -1.9863 34 1 1.5294 -2.5969 -0.4708 35 1 5.0735 0.6548 -1.5281 36 1 4.8008 -2.0048 -0.9687 37 1 4.8244 -1.9632 -2.7480 38 1 5.5277 -1.3193 -4.2842 39 1 7.0565 -1.0101 -5.1418 40 1 6.8708 -2.4803 -4.1559 41 1 7.0710 1.2100 -2.1980 42 1 7.2229 1.1895 -3.9713 43 1 5.6631 0.8005 -3.2072 44 1 6.9716 -3.3352 -2.5374 45 1 8.3635 -2.6405 -1.6728 46 1 7.2333 -4.3682 -0.2986 47 1 5.7084 -3.4569 -0.4072 48 1 8.3102 -2.4325 0.8168 49 1 6.8800 -2.9789 1.7252 50 1 6.9134 -0.5081 1.5193 51 1 5.5212 -1.2030 0.6544 52 1 8.1762 -0.3865 -0.6108 53 1 6.6513 0.5247 -0.7193 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337780445.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:54:11 Heat of formation + Delta-G solvation = -83.552656 kcal Electronic energy + Delta-G solvation = -32947.076372 eV Core-core repulsion = 28980.050428 eV Total energy + Delta-G solvation = -3967.025944 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.203 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.47558 -38.37283 -37.90752 -36.99027 -36.84726 -35.04908 -34.50695 -32.03262 -30.94373 -30.78092 -28.62879 -27.27072 -27.04844 -26.44006 -24.85819 -23.22250 -22.64676 -21.76182 -20.44367 -19.69883 -18.78867 -18.30114 -18.25858 -17.60114 -17.21627 -16.74194 -16.27916 -16.03830 -15.65353 -15.20253 -15.06201 -14.84632 -14.69424 -14.61948 -14.47485 -14.11382 -13.78985 -13.73582 -13.50372 -13.43192 -13.33066 -13.26237 -13.17821 -13.02743 -12.99731 -12.76259 -12.69254 -12.68416 -12.31419 -12.25504 -12.21093 -12.17826 -12.11964 -11.90033 -11.87044 -11.32717 -11.19292 -11.12881 -10.77524 -10.48654 -10.42735 -9.70345 -9.10279 -8.07968 -6.22440 -0.32905 1.46870 1.47198 1.54214 1.96868 2.46042 2.57394 2.94943 3.20867 3.37723 3.67137 3.72638 4.00160 4.03665 4.06184 4.25608 4.33740 4.35539 4.43082 4.51228 4.53857 4.63658 4.66937 4.67068 4.69782 4.73910 4.76364 4.79291 4.90578 4.94909 5.00371 5.01739 5.02379 5.09484 5.13157 5.14850 5.22959 5.24065 5.34157 5.35902 5.42958 5.45594 5.59971 5.63738 5.66283 5.82809 5.98778 6.09886 6.13178 6.15619 6.28806 6.86160 7.47063 8.96600 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010545 B = 0.005618 C = 0.004242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2654.677131 B = 4982.866204 C = 6598.561574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.275 3.725 3 H 0.022 0.978 4 C -0.523 4.523 5 H 0.071 0.929 6 C 0.018 3.982 7 N -0.919 5.919 8 Si 0.954 3.046 9 H -0.293 1.293 10 H -0.270 1.270 11 H -0.268 1.268 12 N -0.995 5.995 13 C 0.100 3.900 14 S 2.792 3.208 15 O -1.006 7.006 16 O -1.021 7.021 17 N -1.114 6.114 18 C 0.086 3.914 19 C 0.112 3.888 20 N -0.524 5.524 21 C 0.009 3.991 22 C -0.004 4.004 23 C -0.094 4.094 24 C -0.122 4.122 25 C -0.114 4.114 26 C -0.127 4.127 27 C -0.104 4.104 28 H 0.070 0.930 29 H 0.015 0.985 30 H 0.044 0.956 31 H 0.262 0.738 32 H 0.049 0.951 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.417 0.583 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.019 0.981 39 H 0.075 0.925 40 H 0.086 0.914 41 H 0.080 0.920 42 H 0.075 0.925 43 H 0.024 0.976 44 H 0.073 0.927 45 H 0.083 0.917 46 H 0.081 0.919 47 H 0.057 0.943 48 H 0.073 0.927 49 H 0.057 0.943 50 H 0.058 0.942 51 H 0.053 0.947 52 H 0.083 0.917 53 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.355 -8.714 -7.389 18.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.171 3.829 3 H 0.040 0.960 4 C -0.562 4.562 5 H 0.089 0.911 6 C -0.182 4.182 7 N -0.558 5.558 8 Si 0.780 3.220 9 H -0.219 1.219 10 H -0.195 1.195 11 H -0.193 1.193 12 N -0.837 5.837 13 C -0.046 4.046 14 S 2.801 3.199 15 O -0.989 6.989 16 O -1.005 7.005 17 N -0.879 5.879 18 C -0.041 4.041 19 C 0.020 3.980 20 N -0.247 5.247 21 C -0.138 4.138 22 C -0.152 4.152 23 C -0.133 4.133 24 C -0.160 4.160 25 C -0.152 4.152 26 C -0.166 4.166 27 C -0.142 4.142 28 H 0.088 0.912 29 H 0.034 0.966 30 H 0.063 0.937 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.091 0.909 34 H 0.098 0.902 35 H 0.256 0.744 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.038 0.962 39 H 0.093 0.907 40 H 0.104 0.896 41 H 0.099 0.901 42 H 0.094 0.906 43 H 0.042 0.958 44 H 0.092 0.908 45 H 0.101 0.899 46 H 0.100 0.900 47 H 0.076 0.924 48 H 0.092 0.908 49 H 0.076 0.924 50 H 0.077 0.923 51 H 0.071 0.929 52 H 0.101 0.899 53 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 14.375 -8.286 -8.123 18.474 hybrid contribution -0.926 0.389 1.417 1.736 sum 13.449 -7.898 -6.706 16.977 Atomic orbital electron populations 1.21950 0.98075 1.00040 0.99801 1.18376 0.91785 0.91301 0.81481 0.96049 1.21531 1.31384 1.12984 0.90296 0.91051 1.25652 0.95212 0.95551 1.01744 1.70010 1.37479 1.24081 1.24269 0.85668 0.78986 0.78721 0.78615 1.21880 1.19467 1.19282 1.57566 1.65231 1.22362 1.38516 1.21389 1.00295 0.80586 1.02284 1.01345 0.73261 0.72054 0.73226 1.93519 1.86597 1.76240 1.42564 1.93537 1.84691 1.34972 1.87329 1.56072 1.30625 1.16411 1.84749 1.22260 0.96750 0.82536 1.02552 1.21296 0.89698 0.96628 0.90336 1.62372 1.58239 1.02339 1.01701 1.22600 0.97703 1.00251 0.93292 1.22890 0.99035 0.89743 1.03569 1.21500 1.01394 0.92429 0.97957 1.21636 1.01107 0.99293 0.93988 1.21499 1.00924 0.94543 0.98205 1.21605 1.00686 0.97236 0.97031 1.21630 1.01891 0.97779 0.92886 0.91155 0.96569 0.93689 0.92855 0.93214 0.90916 0.90219 0.74427 0.90576 0.90361 0.96195 0.90662 0.89556 0.90145 0.90618 0.95780 0.90800 0.89875 0.90036 0.92395 0.90839 0.92435 0.92286 0.92871 0.89881 0.92492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.68 8.97 71.98 0.65 -6.04 16 2 C 0.27 13.38 2.62 44.25 0.12 13.50 16 3 H 0.02 1.21 6.91 -2.39 -0.02 1.19 16 4 C -0.52 -25.83 7.99 25.60 0.20 -25.63 16 5 H 0.07 3.33 7.33 -2.92 -0.02 3.31 16 6 C 0.02 0.93 5.30 84.66 0.45 1.37 16 7 N -0.92 -50.67 11.32 21.45 0.24 -50.43 16 8 Si 0.95 40.56 29.54 68.60 2.03 42.59 16 9 H -0.29 -12.63 7.11 99.48 0.71 -11.93 16 10 H -0.27 -11.05 7.11 99.48 0.71 -10.35 16 11 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 12 N -0.99 -40.30 3.12 -520.46 -1.62 -41.92 16 13 C 0.10 3.36 9.28 127.77 1.19 4.55 16 14 S 2.79 109.02 6.09 -56.49 -0.34 108.67 16 15 O -1.01 -40.06 16.64 -128.00 -2.13 -42.19 16 16 O -1.02 -47.90 16.70 -128.00 -2.14 -50.04 16 17 N -1.11 -34.54 3.79 -187.49 -0.71 -35.25 16 18 C 0.09 2.23 4.10 86.38 0.35 2.58 16 19 C 0.11 2.37 0.43 3.53 0.00 2.37 16 20 N -0.52 -11.10 4.83 -898.69 -4.34 -15.45 16 21 C 0.01 0.19 8.69 127.69 1.11 1.30 16 22 C 0.00 -0.09 8.01 127.69 1.02 0.94 16 23 C -0.09 -1.61 4.66 30.59 0.14 -1.46 16 24 C -0.12 -2.12 5.65 30.59 0.17 -1.95 16 25 C -0.11 -2.21 5.92 30.59 0.18 -2.02 16 26 C -0.13 -3.05 5.65 30.59 0.17 -2.88 16 27 C -0.10 -2.26 3.94 30.59 0.12 -2.14 16 28 H 0.07 3.72 6.07 -2.39 -0.01 3.70 16 29 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.04 1.99 7.67 -2.39 -0.02 1.97 16 31 H 0.26 13.90 8.31 -92.71 -0.77 13.13 16 32 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.07 2.05 7.79 -2.39 -0.02 2.03 16 34 H 0.08 2.69 7.02 -2.39 -0.02 2.67 16 35 H 0.42 12.35 5.03 -96.75 -0.49 11.86 16 36 H 0.08 2.01 4.84 -2.39 -0.01 2.00 16 37 H 0.08 2.01 5.66 -2.39 -0.01 2.00 16 38 H 0.02 0.49 6.46 -2.38 -0.02 0.47 16 39 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.09 1.44 6.20 -2.39 -0.01 1.43 16 41 H 0.08 1.68 5.63 -2.39 -0.01 1.67 16 42 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 43 H 0.02 0.63 5.46 -2.39 -0.01 0.62 16 44 H 0.07 1.14 6.43 -2.39 -0.02 1.12 16 45 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 46 H 0.08 1.15 8.14 -2.38 -0.02 1.13 16 47 H 0.06 1.14 6.30 -2.39 -0.02 1.12 16 48 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 49 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 50 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 51 H 0.05 1.56 6.57 -2.39 -0.02 1.54 16 52 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 53 H 0.06 1.33 4.55 -2.39 -0.01 1.32 16 Total: -1.00 -63.26 390.22 -2.72 -65.98 By element: Atomic # 1 Polarization: 33.13 SS G_CDS: 0.42 Total: 33.55 kcal Atomic # 6 Polarization: -21.40 SS G_CDS: 5.88 Total: -15.52 kcal Atomic # 7 Polarization: -136.61 SS G_CDS: -6.44 Total: -143.05 kcal Atomic # 8 Polarization: -87.96 SS G_CDS: -4.27 Total: -92.22 kcal Atomic # 14 Polarization: 40.56 SS G_CDS: 2.03 Total: 42.59 kcal Atomic # 16 Polarization: 109.02 SS G_CDS: -0.34 Total: 108.67 kcal Total: -63.26 -2.72 -65.98 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337780445.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.574 kcal (2) G-P(sol) polarization free energy of solvation -63.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds