Wall clock time and date at job start Wed Apr 1 2020 04:56:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.47260 * 2 1 4 4 C 1.53002 * 109.47006 * 119.99970 * 2 1 3 5 5 N 1.46901 * 109.47054 * 177.22966 * 4 2 1 6 6 C 1.47999 * 110.99975 * 289.11336 * 5 4 2 7 7 C 1.50450 * 112.82651 * 191.34387 * 6 5 4 8 8 C 1.54318 * 108.49736 * 93.72623 * 7 6 5 9 9 C 1.45874 * 112.18341 * 281.46318 * 8 7 6 10 10 C 1.54314 * 112.18664 * 61.12493 * 9 8 7 11 11 C 1.48005 * 111.00074 * 160.38996 * 5 4 2 12 12 N 1.46498 * 109.46965 * 239.99828 * 2 1 3 13 13 S 1.65602 * 120.00003 * 95.00098 * 12 2 1 14 14 O 1.42101 * 106.40072 * 311.46337 * 13 12 2 15 15 O 1.42096 * 106.40188 * 178.53426 * 13 12 2 16 16 N 1.65603 * 107.21800 * 64.99752 * 13 12 2 17 17 C 1.46496 * 120.00197 * 270.00397 * 16 13 12 18 18 C 1.46497 * 119.99928 * 89.99962 * 16 13 12 19 19 H 1.09003 * 109.47231 * 0.02562 * 18 16 13 20 20 C 1.53002 * 109.47241 * 120.00227 * 18 16 13 21 21 C 1.50700 * 109.47220 * 240.00180 * 18 16 13 22 22 H 1.07999 * 120.00197 * 359.97438 * 21 18 16 23 23 C 1.37876 * 120.00000 * 180.02562 * 21 18 16 24 24 N 1.31519 * 120.00318 * 359.97438 * 23 21 18 25 25 Si 1.86808 * 120.00063 * 179.97438 * 23 21 18 26 26 H 1.48500 * 109.46824 * 359.97438 * 25 23 21 27 27 H 1.48498 * 109.47184 * 119.99753 * 25 23 21 28 28 H 1.48498 * 109.46934 * 239.99306 * 25 23 21 29 29 H 1.09006 * 109.47045 * 300.00109 * 1 2 3 30 30 H 1.09000 * 109.47037 * 59.99978 * 1 2 3 31 31 H 1.08995 * 109.47294 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47092 * 297.22510 * 4 2 1 33 33 H 1.09001 * 109.47366 * 57.23171 * 4 2 1 34 34 H 1.09001 * 108.81130 * 312.20821 * 6 5 4 35 35 H 1.09000 * 108.81410 * 70.47930 * 6 5 4 36 36 H 1.09000 * 109.63162 * 334.02805 * 7 6 5 37 37 H 1.08994 * 109.63167 * 213.42860 * 7 6 5 38 38 H 1.08998 * 108.93776 * 160.76489 * 8 7 6 39 39 H 1.09000 * 108.86558 * 42.11547 * 8 7 6 40 40 H 1.08998 * 108.94189 * 300.42122 * 9 8 7 41 41 H 1.09005 * 108.93759 * 181.81716 * 9 8 7 42 42 H 1.08997 * 109.63440 * 161.75925 * 10 9 8 43 43 H 1.09002 * 109.63291 * 41.16408 * 10 9 8 44 44 H 1.08993 * 108.81115 * 205.70008 * 11 5 4 45 45 H 1.08996 * 108.80745 * 324.08669 * 11 5 4 46 46 H 0.97001 * 120.00095 * 274.99656 * 12 2 1 47 47 H 1.09008 * 109.47261 * 269.99822 * 17 16 13 48 48 H 1.09002 * 109.47348 * 29.99528 * 17 16 13 49 49 H 1.08997 * 109.47547 * 150.00112 * 17 16 13 50 50 H 1.09000 * 109.47166 * 179.97438 * 20 18 16 51 51 H 1.09003 * 109.47130 * 59.99789 * 20 18 16 52 52 H 1.08999 * 109.46929 * 300.00196 * 20 18 16 53 53 H 0.96992 * 120.00209 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 3.5075 -0.7795 1.2163 6 6 3.9776 -1.7205 0.1752 7 6 5.4481 -2.0207 0.2809 8 6 5.6270 -3.3008 1.1240 9 6 5.4955 -3.0416 2.5535 10 6 4.1016 -2.4901 2.9199 11 6 4.0589 -1.0282 2.5670 12 7 2.0183 -0.6906 -1.1961 13 16 2.4121 0.1771 -2.5505 14 8 1.3246 1.0593 -2.7921 15 8 2.8777 -0.7635 -3.5084 16 7 3.7097 1.1300 -2.1620 17 6 3.4954 2.4766 -1.6266 18 6 5.0719 0.6262 -2.3538 19 1 5.0317 -0.3854 -2.7578 20 6 5.8192 1.5358 -3.3311 21 6 5.7927 0.6108 -1.0305 22 1 5.2869 0.9435 -0.1361 23 6 7.0983 0.1731 -0.9617 24 7 7.7145 -0.2316 -2.0508 25 14 7.9922 0.1547 0.6786 26 1 7.0850 0.6558 1.7422 27 1 8.4114 -1.2335 0.9983 28 1 9.1907 1.0277 0.5989 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.7178 -0.1795 2.1386 33 1 1.6367 -1.7336 1.2745 34 1 3.4209 -2.6531 0.2671 35 1 3.7766 -1.2889 -0.8054 36 1 5.9578 -1.1884 0.7662 37 1 5.8624 -2.1773 -0.7150 38 1 6.6153 -3.7172 0.9295 39 1 4.8720 -4.0280 0.8253 40 1 6.2526 -2.3169 2.8529 41 1 5.6627 -3.9708 3.0984 42 1 3.9281 -2.6139 3.9889 43 1 3.3365 -3.0252 2.3574 44 1 5.0708 -0.6258 2.6131 45 1 3.4411 -0.5092 3.2998 46 1 2.1110 -1.6562 -1.1948 47 1 3.4485 3.1912 -2.4484 48 1 2.5586 2.5014 -1.0698 49 1 4.3194 2.7393 -0.9633 50 1 6.8329 1.1612 -3.4734 51 1 5.8594 2.5475 -2.9275 52 1 5.2978 1.5469 -4.2882 53 1 8.6329 -0.5399 -2.0024 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337829528.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:56:30 Heat of formation + Delta-G solvation = -78.414794 kcal Electronic energy + Delta-G solvation = -33771.384161 eV Core-core repulsion = 29804.581012 eV Total energy + Delta-G solvation = -3966.803149 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.203 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.45426 -38.34331 -37.79153 -37.57525 -36.82119 -34.55241 -34.35761 -32.80375 -31.22094 -30.79095 -28.29318 -27.07839 -26.85745 -25.68641 -25.09210 -22.58250 -22.26115 -21.25344 -20.67960 -20.15359 -18.64673 -18.36664 -18.02881 -17.40962 -16.98448 -16.70889 -16.48691 -15.98678 -15.42909 -15.15743 -15.00473 -14.73519 -14.55967 -14.47220 -14.10585 -13.89633 -13.75926 -13.67900 -13.50615 -13.36876 -13.22113 -13.15999 -13.03956 -12.95686 -12.83057 -12.70091 -12.65754 -12.46988 -12.19757 -12.11437 -12.03248 -11.96311 -11.81131 -11.78378 -11.53230 -11.34954 -11.24211 -11.01692 -10.94202 -10.29043 -10.02767 -9.50627 -8.75917 -7.92115 -5.95418 -0.18741 1.41776 1.49248 1.54926 2.11373 2.53979 2.72087 3.09075 3.39928 3.53101 3.80056 3.87984 4.01778 4.10865 4.20427 4.29054 4.31495 4.44991 4.53351 4.57303 4.65199 4.70229 4.75354 4.82323 4.85078 4.89795 4.93319 4.96704 5.01068 5.03069 5.07145 5.09718 5.15507 5.24826 5.28249 5.29390 5.37585 5.39681 5.42636 5.45621 5.48519 5.62101 5.75237 5.78523 5.87186 5.99498 6.17530 6.28953 6.47322 6.49322 6.52230 7.14501 7.68885 9.13755 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009761 B = 0.007493 C = 0.005020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2867.747443 B = 3735.707772 C = 5576.560349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.153 3.847 3 H 0.084 0.916 4 C 0.061 3.939 5 N -0.546 5.546 6 C 0.079 3.921 7 C -0.110 4.110 8 C -0.125 4.125 9 C -0.115 4.115 10 C -0.136 4.136 11 C 0.060 3.940 12 N -1.112 6.112 13 S 2.794 3.206 14 O -1.009 7.009 15 O -1.025 7.025 16 N -0.989 5.989 17 C 0.106 3.894 18 C 0.279 3.721 19 H 0.021 0.979 20 C -0.140 4.140 21 C -0.476 4.476 22 H 0.082 0.918 23 C 0.035 3.965 24 N -0.922 5.922 25 Si 0.921 3.079 26 H -0.256 1.256 27 H -0.289 1.289 28 H -0.308 1.308 29 H 0.089 0.911 30 H 0.050 0.950 31 H 0.067 0.933 32 H 0.106 0.894 33 H 0.046 0.954 34 H 0.027 0.973 35 H 0.072 0.928 36 H 0.067 0.933 37 H 0.043 0.957 38 H 0.041 0.959 39 H 0.064 0.936 40 H 0.042 0.958 41 H 0.069 0.931 42 H 0.085 0.915 43 H 0.065 0.935 44 H 0.045 0.955 45 H 0.087 0.913 46 H 0.416 0.584 47 H 0.044 0.956 48 H 0.072 0.928 49 H 0.078 0.922 50 H 0.069 0.931 51 H 0.042 0.958 52 H 0.011 0.989 53 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.560 -2.131 11.828 16.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.046 3.954 3 H 0.102 0.898 4 C -0.069 4.069 5 N -0.270 5.270 6 C -0.049 4.049 7 C -0.148 4.148 8 C -0.163 4.163 9 C -0.152 4.152 10 C -0.175 4.175 11 C -0.067 4.067 12 N -0.875 5.875 13 S 2.803 3.197 14 O -0.992 6.992 15 O -1.009 7.009 16 N -0.831 5.831 17 C -0.040 4.040 18 C 0.175 3.825 19 H 0.039 0.961 20 C -0.200 4.200 21 C -0.516 4.516 22 H 0.100 0.900 23 C -0.163 4.163 24 N -0.563 5.563 25 Si 0.750 3.250 26 H -0.180 1.180 27 H -0.215 1.215 28 H -0.236 1.236 29 H 0.108 0.892 30 H 0.069 0.931 31 H 0.086 0.914 32 H 0.124 0.876 33 H 0.065 0.935 34 H 0.045 0.955 35 H 0.090 0.910 36 H 0.086 0.914 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.083 0.917 40 H 0.061 0.939 41 H 0.087 0.913 42 H 0.103 0.897 43 H 0.084 0.916 44 H 0.064 0.936 45 H 0.105 0.895 46 H 0.253 0.747 47 H 0.063 0.937 48 H 0.090 0.910 49 H 0.096 0.904 50 H 0.087 0.913 51 H 0.061 0.939 52 H 0.030 0.970 53 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -11.721 -1.596 10.799 16.017 hybrid contribution 1.392 -1.310 0.712 2.040 sum -10.329 -2.906 11.511 15.736 Atomic orbital electron populations 1.22254 0.93806 1.03126 1.03177 1.21006 0.94178 0.96358 0.83820 0.89824 1.22432 0.87025 0.99815 0.97582 1.61568 1.07906 1.52329 1.05233 1.21924 0.94110 0.92687 0.96154 1.21442 0.97349 0.96862 0.99146 1.20702 1.00930 0.98121 0.96535 1.20534 0.97821 1.01095 0.95795 1.21850 0.96368 0.97174 1.02088 1.21912 1.00316 0.95184 0.89334 1.56126 1.81673 1.19381 1.30314 1.01255 0.72589 0.72591 0.73264 1.93518 1.53877 1.66728 1.85111 1.93534 1.82272 1.64291 1.60844 1.57472 1.20146 1.25587 1.79902 1.21348 1.02000 0.82155 0.98501 1.18350 0.76796 0.92120 0.95249 0.96080 1.21973 1.02106 0.99574 0.96378 1.21502 0.96059 1.40210 0.93841 0.90024 1.25254 0.98072 0.95899 0.97046 1.70002 1.12225 1.45884 1.28237 0.86211 0.78417 0.76732 0.83608 1.17957 1.21541 1.23642 0.89197 0.93050 0.91438 0.87622 0.93543 0.95536 0.90977 0.91415 0.93851 0.94043 0.91738 0.93943 0.91259 0.89663 0.91598 0.93640 0.89500 0.74737 0.93710 0.90984 0.90364 0.91251 0.93931 0.97007 0.93663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.12 9.52 71.98 0.69 -2.43 16 2 C 0.15 3.56 3.08 44.99 0.14 3.69 16 3 H 0.08 2.07 6.11 -2.38 -0.01 2.05 16 4 C 0.06 1.22 4.75 86.30 0.41 1.63 16 5 N -0.55 -14.66 4.64 -900.24 -4.18 -18.84 16 6 C 0.08 2.50 2.99 85.27 0.26 2.75 16 7 C -0.11 -4.09 3.24 30.22 0.10 -3.99 16 8 C -0.13 -3.82 5.30 28.86 0.15 -3.67 16 9 C -0.11 -2.94 5.30 28.86 0.15 -2.78 16 10 C -0.14 -2.85 5.60 30.21 0.17 -2.68 16 11 C 0.06 1.44 5.16 85.26 0.44 1.88 16 12 N -1.11 -32.35 3.21 -169.38 -0.54 -32.90 16 13 S 2.79 105.84 5.54 -56.49 -0.31 105.53 16 14 O -1.01 -39.49 16.47 -128.00 -2.11 -41.60 16 15 O -1.03 -47.00 16.70 -128.00 -2.14 -49.14 16 16 N -0.99 -38.66 3.12 -520.45 -1.62 -40.28 16 17 C 0.11 3.48 9.07 127.77 1.16 4.64 16 18 C 0.28 12.98 2.14 44.25 0.09 13.08 16 19 H 0.02 1.15 6.91 -2.39 -0.02 1.13 16 20 C -0.14 -6.64 8.97 71.98 0.65 -5.99 16 21 C -0.48 -22.15 5.11 25.60 0.13 -22.02 16 22 H 0.08 3.71 7.33 -2.91 -0.02 3.69 16 23 C 0.04 1.75 3.95 84.65 0.33 2.09 16 24 N -0.92 -49.81 11.32 21.45 0.24 -49.57 16 25 Si 0.92 41.20 26.25 68.60 1.80 43.00 16 26 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 27 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 28 H -0.31 -14.38 7.11 99.48 0.71 -13.67 16 29 H 0.09 1.24 8.14 -2.38 -0.02 1.22 16 30 H 0.05 1.20 7.64 -2.39 -0.02 1.18 16 31 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.11 1.61 7.55 -2.38 -0.02 1.59 16 33 H 0.05 0.84 7.86 -2.39 -0.02 0.82 16 34 H 0.03 0.75 6.19 -2.39 -0.01 0.74 16 35 H 0.07 2.59 3.88 -2.39 -0.01 2.58 16 36 H 0.07 2.71 2.49 -2.39 -0.01 2.71 16 37 H 0.04 1.93 7.54 -2.39 -0.02 1.91 16 38 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.06 1.77 7.51 -2.39 -0.02 1.75 16 40 H 0.04 1.21 7.52 -2.39 -0.02 1.20 16 41 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 42 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 43 H 0.07 1.36 6.98 -2.39 -0.02 1.34 16 44 H 0.05 1.37 6.59 -2.39 -0.02 1.35 16 45 H 0.09 1.64 7.49 -2.39 -0.02 1.62 16 46 H 0.42 11.33 7.07 -96.74 -0.68 10.65 16 47 H 0.04 1.42 8.14 -2.38 -0.02 1.40 16 48 H 0.07 2.01 6.17 -2.39 -0.01 1.99 16 49 H 0.08 2.63 7.02 -2.39 -0.02 2.61 16 50 H 0.07 3.62 6.07 -2.39 -0.01 3.61 16 51 H 0.04 1.86 7.67 -2.39 -0.02 1.84 16 52 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 53 H 0.25 13.48 8.31 -92.71 -0.77 12.71 16 Total: -1.00 -62.40 381.63 -3.77 -66.17 By element: Atomic # 1 Polarization: 31.21 SS G_CDS: 0.22 Total: 31.43 kcal Atomic # 6 Polarization: -18.67 SS G_CDS: 4.87 Total: -13.80 kcal Atomic # 7 Polarization: -135.49 SS G_CDS: -6.10 Total: -141.59 kcal Atomic # 8 Polarization: -86.49 SS G_CDS: -4.25 Total: -90.74 kcal Atomic # 14 Polarization: 41.20 SS G_CDS: 1.80 Total: 43.00 kcal Atomic # 16 Polarization: 105.84 SS G_CDS: -0.31 Total: 105.53 kcal Total: -62.40 -3.77 -66.17 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337829528.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.244 kcal (2) G-P(sol) polarization free energy of solvation -62.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds