Wall clock time and date at job start Wed Apr 1 2020 04:56:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.47504 * 2 1 4 4 C 1.50704 * 109.46781 * 239.99675 * 2 1 3 5 5 H 1.08005 * 119.99993 * 240.00205 * 4 2 1 6 6 C 1.37873 * 119.99655 * 60.00407 * 4 2 1 7 7 N 1.31510 * 120.00399 * 359.97438 * 6 4 2 8 8 Si 1.86807 * 119.99827 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.46823 * 60.00073 * 8 6 4 10 10 H 1.48501 * 109.47050 * 179.97438 * 8 6 4 11 11 H 1.48495 * 109.47056 * 300.00126 * 8 6 4 12 12 N 1.46499 * 109.46923 * 120.00424 * 2 1 3 13 13 C 1.46502 * 120.00259 * 60.13787 * 12 2 1 14 14 S 1.65606 * 119.99669 * 240.14439 * 12 2 1 15 15 O 1.42103 * 106.40204 * 197.89959 * 14 12 2 16 16 O 1.42098 * 106.39787 * 330.81243 * 14 12 2 17 17 N 1.65589 * 107.22231 * 84.35519 * 14 12 2 18 18 C 1.46505 * 120.00166 * 66.68643 * 17 14 12 19 19 H 1.09000 * 109.47121 * 334.27319 * 18 17 14 20 20 C 1.53003 * 109.46722 * 94.26847 * 18 17 14 21 21 C 1.52994 * 109.47385 * 214.26752 * 18 17 14 22 22 N 1.46898 * 109.47297 * 177.63456 * 21 18 17 23 23 C 1.48009 * 111.00106 * 292.32292 * 22 21 18 24 24 C 1.50442 * 112.82938 * 191.34354 * 23 22 21 25 25 C 1.54304 * 108.49948 * 93.72658 * 24 23 22 26 26 C 1.45886 * 112.18629 * 281.46617 * 25 24 23 27 27 C 1.54307 * 112.18399 * 61.12046 * 26 25 24 28 28 C 1.48002 * 111.00357 * 163.60286 * 22 21 18 29 29 H 1.08999 * 109.47242 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47121 * 300.03095 * 1 2 3 31 31 H 1.09004 * 109.46750 * 60.02611 * 1 2 3 32 32 H 0.96996 * 120.00212 * 179.97438 * 7 6 4 33 33 H 1.09000 * 109.47184 * 90.00514 * 13 12 2 34 34 H 1.09008 * 109.46878 * 209.99744 * 13 12 2 35 35 H 1.08992 * 109.47421 * 330.00373 * 13 12 2 36 36 H 0.96999 * 119.99948 * 246.69167 * 17 14 12 37 37 H 1.08997 * 109.47414 * 60.00529 * 20 18 17 38 38 H 1.09001 * 109.46886 * 180.02562 * 20 18 17 39 39 H 1.08996 * 109.47224 * 300.00129 * 20 18 17 40 40 H 1.09002 * 109.47700 * 297.63793 * 21 18 17 41 41 H 1.09006 * 109.46909 * 57.63625 * 21 18 17 42 42 H 1.08999 * 108.81137 * 312.20889 * 23 22 21 43 43 H 1.09004 * 108.81009 * 70.47942 * 23 22 21 44 44 H 1.08997 * 109.63268 * 334.02730 * 24 23 22 45 45 H 1.09003 * 109.63439 * 213.43208 * 24 23 22 46 46 H 1.09002 * 108.94339 * 160.76685 * 25 24 23 47 47 H 1.08998 * 108.87198 * 42.11289 * 25 24 23 48 48 H 1.08995 * 108.93672 * 300.42247 * 26 25 24 49 49 H 1.09002 * 108.93483 * 181.81656 * 26 25 24 50 50 H 1.08998 * 109.63043 * 161.76391 * 27 26 25 51 51 H 1.08995 * 109.63110 * 41.16691 * 27 26 25 52 52 H 1.09001 * 108.81136 * 205.70145 * 28 22 21 53 53 H 1.08996 * 108.80778 * 324.08929 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5887 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3223 -1.1197 -4.0080 9 1 1.8278 -2.5199 -4.0081 10 1 1.8267 -0.4200 -5.2205 11 1 3.8073 -1.1192 -4.0078 12 7 2.0183 -0.6907 1.1961 13 6 1.6669 -2.0942 1.4264 14 16 2.9674 0.1151 2.2881 15 8 3.6101 -0.8802 3.0726 16 8 3.6767 1.1020 1.5517 17 7 1.9530 0.9331 3.3097 18 6 1.0765 0.1920 4.2201 19 1 0.8753 -0.7963 3.8066 20 6 1.7609 0.0458 5.5807 21 6 -0.2408 0.9513 4.3908 22 7 -1.1413 0.1806 5.2585 23 6 -1.5778 -1.0681 4.5944 24 6 -2.7032 -1.7530 5.3209 25 6 -4.0390 -1.2873 4.7047 26 6 -4.4322 0.0356 5.1773 27 6 -3.3985 1.1187 4.8041 28 6 -2.2442 1.0280 5.7646 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5143 0.8897 31 1 -0.3633 0.5135 -0.8903 32 1 0.7088 1.1612 -3.4843 33 1 2.4200 -2.7368 0.9705 34 1 1.6255 -2.2872 2.4984 35 1 0.6939 -2.3028 0.9817 36 1 1.9390 1.9030 3.3054 37 1 1.9621 1.0340 5.9943 38 1 1.1090 -0.5060 6.2579 39 1 2.6993 -0.4951 5.4591 40 1 -0.0440 1.9233 4.8432 41 1 -0.7079 1.0922 3.4160 42 1 -1.9054 -0.8318 3.5820 43 1 -0.7298 -1.7505 4.5368 44 1 -2.6740 -1.4850 6.3770 45 1 -2.6061 -2.8331 5.2114 46 1 -4.8182 -2.0029 4.9671 47 1 -3.9360 -1.2592 3.6199 48 1 -4.5385 0.0067 6.2617 49 1 -5.3940 0.2974 4.7361 50 1 -3.8584 2.1043 4.8764 51 1 -3.0431 0.9509 3.7874 52 1 -2.6026 0.6129 6.7066 53 1 -1.8608 2.0319 5.9467 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337829531.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:56:36 Heat of formation + Delta-G solvation = -102.239652 kcal Electronic energy + Delta-G solvation = -31587.846441 eV Core-core repulsion = 27620.010169 eV Total energy + Delta-G solvation = -3967.836273 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.203 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.41366 -38.38678 -37.97493 -37.60015 -36.87719 -34.80815 -34.53745 -32.99827 -30.96702 -30.79725 -28.32037 -27.30574 -27.00418 -25.92276 -25.47892 -22.64187 -22.33732 -21.36551 -20.46699 -20.20516 -18.89382 -18.57226 -18.12216 -17.58119 -17.08066 -16.85541 -16.37617 -15.98346 -15.62864 -15.26336 -15.18698 -14.87112 -14.69067 -14.61726 -14.32520 -13.91566 -13.89346 -13.73504 -13.67399 -13.41028 -13.26361 -13.18931 -13.13510 -13.09863 -12.98783 -12.80558 -12.61643 -12.52628 -12.31729 -12.22471 -12.16615 -12.08207 -12.03326 -11.90190 -11.60025 -11.40352 -11.29723 -11.18127 -11.05734 -10.54739 -10.49720 -9.68671 -9.09307 -8.12548 -6.25784 -0.31755 1.42086 1.44183 1.51003 2.00106 2.42715 2.62145 2.97376 3.15838 3.46790 3.68535 3.80942 3.88423 4.02606 4.10557 4.16775 4.23504 4.31355 4.36173 4.48414 4.53424 4.61980 4.65685 4.72342 4.78777 4.79964 4.82186 4.89958 4.96503 4.98690 5.01902 5.09135 5.10270 5.12690 5.15694 5.16066 5.26760 5.30768 5.35335 5.38106 5.44632 5.48560 5.52194 5.59845 5.69987 5.85366 6.03807 6.13381 6.23821 6.27381 6.29299 6.81065 7.43125 8.91352 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011625 B = 0.003730 C = 0.003146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2408.041742 B = 7504.286350 C = 8898.020214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.277 3.723 3 H 0.022 0.978 4 C -0.539 4.539 5 H 0.055 0.945 6 C 0.019 3.981 7 N -0.913 5.913 8 Si 0.953 3.047 9 H -0.266 1.266 10 H -0.281 1.281 11 H -0.280 1.280 12 N -0.997 5.997 13 C 0.103 3.897 14 S 2.795 3.205 15 O -1.004 7.004 16 O -1.020 7.020 17 N -1.115 6.115 18 C 0.154 3.846 19 H 0.075 0.925 20 C -0.153 4.153 21 C 0.060 3.940 22 N -0.541 5.541 23 C 0.055 3.945 24 C -0.114 4.114 25 C -0.122 4.122 26 C -0.114 4.114 27 C -0.150 4.150 28 C 0.062 3.938 29 H 0.041 0.959 30 H 0.031 0.969 31 H 0.066 0.934 32 H 0.264 0.736 33 H 0.042 0.958 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.420 0.580 37 H 0.065 0.935 38 H 0.088 0.912 39 H 0.044 0.956 40 H 0.092 0.908 41 H 0.030 0.970 42 H 0.023 0.977 43 H 0.069 0.931 44 H 0.080 0.920 45 H 0.077 0.923 46 H 0.069 0.931 47 H 0.045 0.955 48 H 0.072 0.928 49 H 0.058 0.942 50 H 0.074 0.926 51 H 0.045 0.955 52 H 0.085 0.915 53 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.516 -1.740 19.278 22.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.173 3.827 3 H 0.040 0.960 4 C -0.579 4.579 5 H 0.073 0.927 6 C -0.180 4.180 7 N -0.552 5.552 8 Si 0.779 3.221 9 H -0.191 1.191 10 H -0.206 1.206 11 H -0.206 1.206 12 N -0.839 5.839 13 C -0.042 4.042 14 S 2.804 3.196 15 O -0.987 6.987 16 O -1.004 7.004 17 N -0.877 5.877 18 C 0.047 3.953 19 H 0.093 0.907 20 C -0.212 4.212 21 C -0.070 4.070 22 N -0.266 5.266 23 C -0.072 4.072 24 C -0.151 4.151 25 C -0.160 4.160 26 C -0.151 4.151 27 C -0.189 4.189 28 C -0.065 4.065 29 H 0.060 0.940 30 H 0.050 0.950 31 H 0.084 0.916 32 H 0.074 0.926 33 H 0.060 0.940 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.255 0.745 37 H 0.084 0.916 38 H 0.107 0.893 39 H 0.063 0.937 40 H 0.110 0.890 41 H 0.048 0.952 42 H 0.041 0.959 43 H 0.087 0.913 44 H 0.098 0.902 45 H 0.096 0.904 46 H 0.088 0.912 47 H 0.064 0.936 48 H 0.091 0.909 49 H 0.077 0.923 50 H 0.093 0.907 51 H 0.064 0.936 52 H 0.103 0.897 53 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -10.391 -1.996 19.580 22.256 hybrid contribution -0.335 0.467 -2.181 2.255 sum -10.726 -1.529 17.399 20.497 Atomic orbital electron populations 1.21868 0.96816 1.00033 1.00237 1.18343 0.92134 0.91064 0.81201 0.96050 1.21622 1.31651 1.13059 0.91529 0.92652 1.25604 0.95185 0.95699 1.01560 1.69955 1.37246 1.23644 1.24386 0.85690 0.78458 0.79092 0.78879 1.19120 1.20639 1.20558 1.57590 1.70153 1.20852 1.35283 1.21356 1.01729 0.80482 1.00657 1.01283 0.73590 0.72514 0.72261 1.93520 1.73788 1.60790 1.70606 1.93551 1.72058 1.62228 1.72581 1.55883 1.59080 1.18976 1.53776 1.20783 0.89580 0.94485 0.90425 0.90697 1.22132 1.00318 1.02816 0.95926 1.22294 0.91644 0.97236 0.95805 1.61830 1.18994 1.06018 1.39776 1.21906 0.98414 0.91201 0.95692 1.21385 0.92960 1.00104 1.00694 1.20609 0.97817 0.97593 0.99931 1.20521 0.98293 0.94467 1.01819 1.21916 0.97607 0.99850 0.99493 1.21957 0.89543 0.96989 0.98022 0.93966 0.94951 0.91563 0.92643 0.93963 0.90444 0.90386 0.74460 0.91613 0.89318 0.93731 0.88980 0.95185 0.95862 0.91265 0.90163 0.90433 0.91225 0.93641 0.90941 0.92338 0.90726 0.93621 0.89682 0.90791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.75 8.95 71.98 0.64 -5.11 16 2 C 0.28 13.56 2.60 44.25 0.12 13.67 16 3 H 0.02 1.20 7.07 -2.39 -0.02 1.18 16 4 C -0.54 -29.31 8.37 25.60 0.21 -29.10 16 5 H 0.06 3.00 7.64 -2.91 -0.02 2.98 16 6 C 0.02 1.06 5.30 84.65 0.45 1.51 16 7 N -0.91 -51.15 11.32 21.45 0.24 -50.91 16 8 Si 0.95 43.41 29.54 68.60 2.03 45.44 16 9 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 10 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 11 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 12 N -1.00 -40.91 3.12 -520.43 -1.62 -42.53 16 13 C 0.10 3.57 9.44 127.77 1.21 4.78 16 14 S 2.79 109.71 6.01 -56.49 -0.34 109.37 16 15 O -1.00 -40.76 16.18 -128.00 -2.07 -42.83 16 16 O -1.02 -49.12 16.89 -128.00 -2.16 -51.28 16 17 N -1.11 -32.18 5.54 -169.38 -0.94 -33.11 16 18 C 0.15 3.72 2.76 44.99 0.12 3.84 16 19 H 0.08 1.90 5.46 -2.39 -0.01 1.88 16 20 C -0.15 -3.37 9.38 71.98 0.68 -2.70 16 21 C 0.06 1.23 4.56 86.30 0.39 1.62 16 22 N -0.54 -9.55 4.00 -900.25 -3.60 -13.16 16 23 C 0.05 1.02 4.51 85.26 0.38 1.40 16 24 C -0.11 -1.66 5.63 30.21 0.17 -1.49 16 25 C -0.12 -1.76 5.30 28.86 0.15 -1.61 16 26 C -0.11 -1.51 5.30 28.86 0.15 -1.36 16 27 C -0.15 -2.27 5.60 30.21 0.17 -2.10 16 28 C 0.06 0.90 5.16 85.26 0.44 1.34 16 29 H 0.04 1.75 6.67 -2.39 -0.02 1.73 16 30 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.07 3.31 6.07 -2.38 -0.01 3.30 16 32 H 0.26 14.12 8.31 -92.71 -0.77 13.35 16 33 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.08 2.21 6.62 -2.38 -0.02 2.20 16 35 H 0.08 2.57 6.43 -2.39 -0.02 2.55 16 36 H 0.42 10.59 8.83 -96.75 -0.85 9.74 16 37 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.09 1.72 7.67 -2.39 -0.02 1.71 16 39 H 0.04 1.16 7.56 -2.39 -0.02 1.14 16 40 H 0.09 1.62 7.63 -2.39 -0.02 1.60 16 41 H 0.03 0.71 7.83 -2.38 -0.02 0.70 16 42 H 0.02 0.51 6.35 -2.39 -0.02 0.49 16 43 H 0.07 1.33 6.97 -2.38 -0.02 1.31 16 44 H 0.08 1.09 7.08 -2.39 -0.02 1.07 16 45 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 46 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 47 H 0.04 0.80 7.51 -2.39 -0.02 0.78 16 48 H 0.07 0.81 7.52 -2.39 -0.02 0.79 16 49 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 50 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 51 H 0.04 0.90 6.88 -2.39 -0.02 0.89 16 52 H 0.08 1.08 6.59 -2.39 -0.02 1.06 16 53 H 0.07 0.99 7.54 -2.39 -0.02 0.97 16 Total: -1.00 -66.96 403.98 -3.14 -70.10 By element: Atomic # 1 Polarization: 24.18 SS G_CDS: 0.04 Total: 24.22 kcal Atomic # 6 Polarization: -20.59 SS G_CDS: 5.29 Total: -15.30 kcal Atomic # 7 Polarization: -133.79 SS G_CDS: -5.92 Total: -139.71 kcal Atomic # 8 Polarization: -89.88 SS G_CDS: -4.23 Total: -94.11 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Atomic # 16 Polarization: 109.71 SS G_CDS: -0.34 Total: 109.37 kcal Total: -66.96 -3.14 -70.10 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337829531.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.137 kcal (2) G-P(sol) polarization free energy of solvation -66.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds