Wall clock time and date at job start Wed Apr 1 2020 04:54:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46821 * 2 1 4 4 C 1.50696 * 109.47144 * 119.99764 * 2 1 3 5 5 H 1.08002 * 119.99821 * 114.49102 * 4 2 1 6 6 C 1.37869 * 120.00229 * 294.49202 * 4 2 1 7 7 N 1.31515 * 120.00095 * 164.52587 * 6 4 2 8 8 Si 1.86802 * 120.00055 * 344.79770 * 6 4 2 9 9 H 1.48500 * 109.47226 * 269.72753 * 8 6 4 10 10 H 1.48504 * 109.46735 * 29.72658 * 8 6 4 11 11 H 1.48497 * 109.47182 * 149.72492 * 8 6 4 12 12 N 1.46503 * 109.46839 * 240.00018 * 2 1 3 13 13 C 1.46508 * 119.99926 * 299.99455 * 12 2 1 14 14 S 1.65596 * 120.00083 * 120.00020 * 12 2 1 15 15 O 1.42092 * 106.40337 * 203.53885 * 14 12 2 16 16 O 1.42104 * 106.40050 * 336.45374 * 14 12 2 17 17 N 1.65599 * 107.21899 * 89.99694 * 14 12 2 18 18 C 1.46496 * 120.00406 * 65.00128 * 17 14 12 19 19 C 1.52991 * 109.47449 * 164.99931 * 18 17 14 20 20 C 1.53000 * 109.47203 * 179.97438 * 19 18 17 21 21 C 1.53004 * 109.47197 * 179.97438 * 20 19 18 22 22 C 1.53000 * 109.47197 * 180.02562 * 21 20 19 23 23 N 1.46893 * 109.47225 * 180.02562 * 22 21 20 24 24 C 1.48529 * 110.99810 * 52.60707 * 23 22 21 25 25 C 1.54939 * 103.22619 * 159.71973 * 24 23 22 26 26 C 1.54590 * 102.92417 * 322.58307 * 25 24 23 27 27 C 1.47906 * 110.99968 * 170.00073 * 23 22 21 28 28 H 1.08996 * 109.47394 * 53.77285 * 1 2 3 29 29 H 1.09007 * 109.46851 * 173.77444 * 1 2 3 30 30 H 1.08998 * 109.47107 * 293.76516 * 1 2 3 31 31 H 0.96993 * 120.00377 * 355.18434 * 7 6 4 32 32 H 1.08998 * 109.46944 * 90.00357 * 13 12 2 33 33 H 1.08996 * 109.46907 * 209.99921 * 13 12 2 34 34 H 1.08998 * 109.46952 * 330.00279 * 13 12 2 35 35 H 0.97003 * 119.99684 * 245.00392 * 17 14 12 36 36 H 1.08997 * 109.46718 * 285.00270 * 18 17 14 37 37 H 1.09004 * 109.46661 * 44.99333 * 18 17 14 38 38 H 1.09004 * 109.47071 * 299.99898 * 19 18 17 39 39 H 1.08999 * 109.47346 * 60.00344 * 19 18 17 40 40 H 1.08993 * 109.47424 * 300.00376 * 20 19 18 41 41 H 1.09005 * 109.46890 * 60.00292 * 20 19 18 42 42 H 1.09004 * 109.47287 * 300.00147 * 21 20 19 43 43 H 1.09005 * 109.46748 * 60.00467 * 21 20 19 44 44 H 1.08993 * 109.47424 * 300.00638 * 22 21 20 45 45 H 1.09010 * 109.46985 * 60.00089 * 22 21 20 46 46 H 1.09000 * 110.67195 * 278.15266 * 24 23 22 47 47 H 1.08996 * 110.66791 * 41.28539 * 24 23 22 48 48 H 1.09005 * 110.72527 * 204.22657 * 25 24 23 49 49 H 1.09003 * 110.72281 * 80.94882 * 25 24 23 50 50 H 1.09001 * 110.31076 * 263.04408 * 26 25 24 51 51 H 1.09004 * 110.31045 * 140.86959 * 26 25 24 52 52 H 1.09002 * 109.91686 * 333.51089 * 27 23 22 53 53 H 1.09000 * 109.91432 * 94.61060 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.5779 -1.6374 1.1339 6 6 1.7955 -0.1768 2.4795 7 7 1.9532 -0.9202 3.5528 8 14 1.2432 1.5998 2.6468 9 1 2.4336 2.4781 2.7770 10 1 0.4676 1.9925 1.4428 11 1 0.3894 1.7412 3.8535 12 7 2.0183 -0.6906 -1.1962 13 6 1.6644 -2.0933 -1.4280 14 16 2.9703 0.1141 -2.2863 15 8 2.8226 -0.5646 -3.5259 16 8 2.6902 1.4972 -2.1194 17 7 4.5437 -0.1043 -1.8181 18 6 5.1358 -1.4440 -1.8416 19 6 6.6577 -1.3311 -1.7336 20 6 7.2759 -2.7304 -1.7575 21 6 8.7980 -2.6173 -1.6502 22 6 9.4163 -4.0166 -1.6747 23 7 10.8776 -3.9082 -1.5711 24 6 11.2682 -3.0820 -0.4002 25 6 12.7368 -3.5037 -0.1429 26 6 12.7191 -5.0197 -0.4447 27 6 11.4933 -5.2349 -1.3517 28 1 -0.3634 0.6073 -0.8290 29 1 -0.3633 -1.0217 -0.1115 30 1 -0.3633 0.4141 0.9405 31 1 2.1679 -1.8619 3.4633 32 1 0.7376 -2.1445 -1.9993 33 1 2.4628 -2.5819 -1.9864 34 1 1.5296 -2.5969 -0.4707 35 1 5.0732 0.6550 -1.5283 36 1 4.7540 -2.0246 -1.0018 37 1 4.8735 -1.9408 -2.7758 38 1 7.0394 -0.7504 -2.5735 39 1 6.9198 -0.8344 -0.7995 40 1 6.8942 -3.3107 -0.9176 41 1 7.0139 -3.2275 -2.6915 42 1 9.1795 -2.0372 -2.4905 43 1 9.0604 -2.1201 -0.7163 44 1 9.0349 -4.5972 -0.8348 45 1 9.1538 -4.5135 -2.6088 46 1 11.2094 -2.0206 -0.6414 47 1 10.6439 -3.3168 0.4618 48 1 13.0146 -3.3202 0.8950 49 1 13.4122 -2.9830 -0.8218 50 1 12.6106 -5.5881 0.4790 51 1 13.6309 -5.3125 -0.9652 52 1 10.7808 -5.8986 -0.8618 53 1 11.8037 -5.6624 -2.3052 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339036866.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:54:27 Heat of formation + Delta-G solvation = -114.823190 kcal Electronic energy + Delta-G solvation = -29299.124359 eV Core-core repulsion = 25330.742423 eV Total energy + Delta-G solvation = -3968.381936 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.203 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -39.97451 -38.42752 -38.08566 -37.61306 -36.94626 -35.40621 -34.59954 -32.76943 -31.62183 -30.03963 -29.37748 -27.26657 -26.61227 -25.80178 -23.36501 -22.57672 -22.29601 -21.65795 -21.19366 -20.27422 -19.51149 -18.74254 -18.41595 -17.38969 -17.12518 -16.81614 -16.63288 -16.43762 -15.70850 -15.56621 -15.39290 -15.00752 -14.93725 -14.64354 -14.36290 -14.07154 -13.95228 -13.80374 -13.57590 -13.57032 -13.45456 -13.28122 -13.24082 -13.07460 -13.01382 -12.82066 -12.64188 -12.48202 -12.30070 -12.25810 -12.07670 -12.00308 -11.91726 -11.84784 -11.61361 -11.47987 -11.42568 -11.36730 -11.11468 -10.55413 -10.40860 -9.83167 -9.41074 -8.64751 -6.31736 -0.33563 1.52229 1.52627 1.71220 1.94654 2.49524 2.57409 3.00491 3.09628 3.37427 3.66124 3.77029 3.88767 3.93712 3.95736 4.04225 4.10369 4.20892 4.32747 4.41568 4.45009 4.48389 4.55663 4.61169 4.63004 4.64751 4.71134 4.74398 4.81392 4.84171 4.89710 4.90966 4.93009 4.94649 4.97009 5.03290 5.05613 5.08012 5.17936 5.22319 5.29627 5.30338 5.38849 5.43827 5.52943 5.72787 5.93023 5.98094 6.07480 6.11074 6.13837 6.67740 7.42384 8.69803 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012250 B = 0.002300 C = 0.002078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2285.164320 B =12172.647207 C =13472.045094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.243 3.757 3 H 0.043 0.957 4 C -0.592 4.592 5 H 0.042 0.958 6 C -0.008 4.008 7 N -0.936 5.936 8 Si 1.058 2.942 9 H -0.276 1.276 10 H -0.242 1.242 11 H -0.284 1.284 12 N -0.993 5.993 13 C 0.101 3.899 14 S 2.799 3.201 15 O -1.004 7.004 16 O -1.012 7.012 17 N -1.120 6.120 18 C 0.116 3.884 19 C -0.117 4.117 20 C -0.113 4.113 21 C -0.110 4.110 22 C 0.047 3.953 23 N -0.532 5.532 24 C 0.029 3.971 25 C -0.124 4.124 26 C -0.130 4.130 27 C 0.030 3.970 28 H 0.045 0.955 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.257 0.743 32 H 0.058 0.942 33 H 0.073 0.927 34 H 0.066 0.934 35 H 0.421 0.579 36 H 0.056 0.944 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.067 0.933 40 H 0.061 0.939 41 H 0.075 0.925 42 H 0.071 0.929 43 H 0.060 0.940 44 H 0.031 0.969 45 H 0.079 0.921 46 H 0.082 0.918 47 H 0.039 0.961 48 H 0.080 0.920 49 H 0.075 0.925 50 H 0.071 0.929 51 H 0.080 0.920 52 H 0.042 0.958 53 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.282 -6.563 -10.269 21.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.137 3.863 3 H 0.060 0.940 4 C -0.631 4.631 5 H 0.061 0.939 6 C -0.208 4.208 7 N -0.572 5.572 8 Si 0.880 3.120 9 H -0.202 1.202 10 H -0.165 1.165 11 H -0.210 1.210 12 N -0.834 5.834 13 C -0.044 4.044 14 S 2.807 3.193 15 O -0.987 6.987 16 O -0.996 6.996 17 N -0.883 5.883 18 C -0.010 4.010 19 C -0.156 4.156 20 C -0.152 4.152 21 C -0.148 4.148 22 C -0.081 4.081 23 N -0.256 5.256 24 C -0.098 4.098 25 C -0.162 4.162 26 C -0.168 4.168 27 C -0.098 4.098 28 H 0.064 0.936 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.077 0.923 33 H 0.092 0.908 34 H 0.085 0.915 35 H 0.256 0.744 36 H 0.074 0.926 37 H 0.097 0.903 38 H 0.098 0.902 39 H 0.086 0.914 40 H 0.079 0.921 41 H 0.093 0.907 42 H 0.090 0.910 43 H 0.079 0.921 44 H 0.049 0.951 45 H 0.097 0.903 46 H 0.100 0.900 47 H 0.058 0.942 48 H 0.098 0.902 49 H 0.093 0.907 50 H 0.089 0.911 51 H 0.099 0.901 52 H 0.060 0.940 53 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 16.669 -4.863 -10.511 20.297 hybrid contribution 0.272 -1.806 0.582 1.916 sum 16.941 -6.668 -9.929 20.737 Atomic orbital electron populations 1.22368 0.97172 1.01316 1.00414 1.18850 0.92349 0.92374 0.82700 0.93959 1.22315 1.38710 1.10109 0.91938 0.93938 1.26708 0.94260 1.07813 0.92032 1.70927 1.46679 1.07810 1.31784 0.83967 0.78069 0.72520 0.77426 1.20192 1.16545 1.21029 1.57466 1.65517 1.22323 1.38093 1.21369 1.00759 0.80576 1.01739 1.01178 0.73017 0.72065 0.72994 1.93532 1.86506 1.76326 1.42339 1.93537 1.84612 1.34246 1.87250 1.55712 1.30977 1.16466 1.85109 1.21399 0.95762 0.82134 1.01731 1.21704 0.92090 0.98573 1.03239 1.21458 0.94825 0.96076 1.02832 1.21554 0.94369 0.96385 1.02525 1.22321 0.87060 0.97511 1.01179 1.64828 1.09278 1.11618 1.39880 1.23284 0.96158 0.98861 0.91519 1.22507 0.95796 0.95744 1.02154 1.22413 0.98216 0.96656 0.99543 1.22943 0.96202 0.90521 1.00108 0.93561 0.92456 0.92743 0.93435 0.92297 0.90813 0.91506 0.74418 0.92556 0.90259 0.90191 0.91386 0.92069 0.90653 0.91029 0.92111 0.95071 0.90293 0.89963 0.94222 0.90156 0.90662 0.91051 0.90080 0.93969 0.90113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.32 8.57 71.98 0.62 -5.70 16 2 C 0.24 10.88 2.17 44.24 0.10 10.98 16 3 H 0.04 1.98 5.54 -2.39 -0.01 1.97 16 4 C -0.59 -30.37 8.37 25.60 0.21 -30.16 16 5 H 0.04 2.33 7.38 -2.91 -0.02 2.31 16 6 C -0.01 -0.44 5.33 84.65 0.45 0.01 16 7 N -0.94 -55.17 13.70 21.44 0.29 -54.88 16 8 Si 1.06 48.00 26.17 68.60 1.80 49.79 16 9 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 10 H -0.24 -9.93 5.53 99.48 0.55 -9.38 16 11 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 12 N -0.99 -38.33 3.12 -520.43 -1.62 -39.95 16 13 C 0.10 3.37 9.16 127.77 1.17 4.54 16 14 S 2.80 101.37 6.09 -56.49 -0.34 101.02 16 15 O -1.00 -37.83 16.68 -128.00 -2.14 -39.97 16 16 O -1.01 -42.38 16.70 -128.00 -2.14 -44.51 16 17 N -1.12 -32.85 6.05 -187.51 -1.14 -33.98 16 18 C 0.12 2.90 6.25 86.38 0.54 3.44 16 19 C -0.12 -2.31 5.36 30.59 0.16 -2.15 16 20 C -0.11 -1.94 5.21 30.60 0.16 -1.78 16 21 C -0.11 -1.80 4.87 30.60 0.15 -1.65 16 22 C 0.05 0.78 5.03 86.30 0.43 1.22 16 23 N -0.53 -9.03 5.40 -883.02 -4.76 -13.79 16 24 C 0.03 0.46 5.10 86.65 0.44 0.90 16 25 C -0.12 -1.55 7.06 31.80 0.22 -1.33 16 26 C -0.13 -1.54 6.93 31.47 0.22 -1.32 16 27 C 0.03 0.43 6.70 86.45 0.58 1.01 16 28 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 29 H 0.06 2.23 7.47 -2.38 -0.02 2.21 16 30 H 0.05 2.27 5.06 -2.39 -0.01 2.26 16 31 H 0.26 15.20 8.73 -92.71 -0.81 14.39 16 32 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.07 2.09 7.79 -2.39 -0.02 2.07 16 34 H 0.07 2.40 6.92 -2.39 -0.02 2.38 16 35 H 0.42 10.96 8.65 -96.74 -0.84 10.12 16 36 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.08 1.88 7.75 -2.38 -0.02 1.87 16 38 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 39 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 42 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 43 H 0.06 1.04 6.79 -2.38 -0.02 1.02 16 44 H 0.03 0.54 7.81 -2.39 -0.02 0.52 16 45 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 46 H 0.08 1.28 7.66 -2.39 -0.02 1.26 16 47 H 0.04 0.66 8.00 -2.39 -0.02 0.64 16 48 H 0.08 0.85 8.14 -2.38 -0.02 0.83 16 49 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 50 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 51 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 52 H 0.04 0.61 7.57 -2.39 -0.02 0.60 16 53 H 0.08 1.09 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -66.10 416.88 -4.76 -70.86 By element: Atomic # 1 Polarization: 27.57 SS G_CDS: -0.16 Total: 27.40 kcal Atomic # 6 Polarization: -27.45 SS G_CDS: 5.46 Total: -21.99 kcal Atomic # 7 Polarization: -135.38 SS G_CDS: -7.23 Total: -142.61 kcal Atomic # 8 Polarization: -80.21 SS G_CDS: -4.27 Total: -84.48 kcal Atomic # 14 Polarization: 48.00 SS G_CDS: 1.80 Total: 49.79 kcal Atomic # 16 Polarization: 101.37 SS G_CDS: -0.34 Total: 101.02 kcal Total: -66.10 -4.76 -70.86 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339036866.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.962 kcal (2) G-P(sol) polarization free energy of solvation -66.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds