Wall clock time and date at job start Wed Apr 1 2020 04:54:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46497 * 109.47021 * 119.99638 * 2 1 3 13 13 C 1.46497 * 120.00073 * 60.00310 * 12 2 1 14 14 S 1.65606 * 120.00188 * 240.00233 * 12 2 1 15 15 O 1.42096 * 106.40395 * 203.54186 * 14 12 2 16 16 O 1.42108 * 106.39975 * 336.45918 * 14 12 2 17 17 N 1.65593 * 107.21842 * 89.99816 * 14 12 2 18 18 C 1.46500 * 119.99925 * 65.00539 * 17 14 12 19 19 C 1.53002 * 109.47408 * 164.99913 * 18 17 14 20 20 C 1.52999 * 109.46988 * 179.97438 * 19 18 17 21 21 C 1.53002 * 109.46988 * 179.97438 * 20 19 18 22 22 C 1.52992 * 109.47448 * 180.02562 * 21 20 19 23 23 N 1.46902 * 109.47542 * 179.97438 * 22 21 20 24 24 C 1.48529 * 111.00161 * 52.60089 * 23 22 21 25 25 C 1.54931 * 103.22840 * 159.71949 * 24 23 22 26 26 C 1.54594 * 102.92285 * 322.59038 * 25 24 23 27 27 C 1.47896 * 111.00021 * 170.00100 * 23 22 21 28 28 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 29 29 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 30 30 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 31 31 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 32 32 H 1.09001 * 109.46905 * 89.99959 * 13 12 2 33 33 H 1.09005 * 109.47144 * 209.99900 * 13 12 2 34 34 H 1.08993 * 109.47302 * 330.00087 * 13 12 2 35 35 H 0.97005 * 120.00537 * 244.99777 * 17 14 12 36 36 H 1.09006 * 109.47312 * 284.99498 * 18 17 14 37 37 H 1.09004 * 109.47167 * 44.99686 * 18 17 14 38 38 H 1.08999 * 109.47181 * 299.99992 * 19 18 17 39 39 H 1.09004 * 109.47142 * 59.99757 * 19 18 17 40 40 H 1.08998 * 109.47436 * 299.99584 * 20 19 18 41 41 H 1.08998 * 109.47371 * 60.00375 * 20 19 18 42 42 H 1.08999 * 109.47181 * 300.00234 * 21 20 19 43 43 H 1.09004 * 109.47142 * 59.99999 * 21 20 19 44 44 H 1.08999 * 109.47058 * 300.00232 * 22 21 20 45 45 H 1.09004 * 109.47012 * 59.99843 * 22 21 20 46 46 H 1.08993 * 110.66808 * 278.16187 * 24 23 22 47 47 H 1.09003 * 110.66335 * 41.28942 * 24 23 22 48 48 H 1.09005 * 110.72529 * 204.22760 * 25 24 23 49 49 H 1.09004 * 110.71785 * 80.95013 * 25 24 23 50 50 H 1.08997 * 110.30523 * 263.03430 * 26 25 24 51 51 H 1.08998 * 110.30939 * 140.87217 * 26 25 24 52 52 H 1.08998 * 109.91899 * 333.50749 * 27 23 22 53 53 H 1.09005 * 109.91786 * 94.60982 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 3.6306 -0.5441 -4.4118 10 1 2.4882 -2.5655 -3.7120 11 1 1.3445 -0.9492 -5.1122 12 7 2.0183 -0.6905 1.1962 13 6 1.6644 -2.0931 1.4281 14 16 2.9703 0.1143 2.2863 15 8 3.7118 -0.8787 2.9816 16 8 3.5794 1.1831 1.5748 17 7 1.9606 0.8092 3.3997 18 6 1.1509 -0.0350 4.2817 19 6 0.6085 0.8078 5.4378 20 6 -0.2376 -0.0739 6.3585 21 6 -0.7795 0.7688 7.5149 22 6 -1.6251 -0.1128 8.4359 23 7 -2.1448 0.6961 9.5466 24 6 -2.8412 1.9073 9.0426 25 6 -3.7388 2.3222 10.2353 26 6 -4.2015 0.9633 10.8090 27 6 -3.1544 -0.0559 10.3228 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 0.7088 1.1611 -3.4845 32 1 2.4158 -2.7376 0.9718 33 1 1.6238 -2.2851 2.5003 34 1 0.6905 -2.3002 0.9847 35 1 1.9053 1.7753 3.4681 36 1 0.3187 -0.4565 3.7178 37 1 1.7669 -0.8422 4.6782 38 1 1.4406 1.2293 6.0017 39 1 -0.0075 1.6149 5.0412 40 1 -1.0697 -0.4950 5.7943 41 1 0.3780 -0.8812 6.7551 42 1 0.0529 1.1896 8.0790 43 1 -1.3950 1.5764 7.1187 44 1 -2.4574 -0.5340 7.8721 45 1 -1.0091 -0.9202 8.8321 46 1 -2.1240 2.6941 8.8088 47 1 -3.4482 1.6668 8.1698 48 1 -4.5923 2.9063 9.8908 49 1 -3.1635 2.8779 10.9759 50 1 -5.1878 0.7059 10.4231 51 1 -4.2179 0.9984 11.8983 52 1 -3.6304 -0.8029 9.6876 53 1 -2.6807 -0.5416 11.1760 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339036878.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:54:29 Heat of formation + Delta-G solvation = -114.389382 kcal Electronic energy + Delta-G solvation = -29007.253215 eV Core-core repulsion = 25038.890091 eV Total energy + Delta-G solvation = -3968.363124 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.203 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -39.94038 -38.34052 -37.92069 -37.55013 -36.86049 -35.36305 -34.51599 -32.72663 -30.90094 -30.00320 -29.33356 -27.27810 -26.98286 -25.74476 -23.31429 -22.64712 -22.26752 -21.62480 -21.15097 -20.17781 -18.75979 -18.55744 -18.09678 -17.28922 -17.08287 -16.80476 -16.69745 -16.54116 -15.92576 -15.51332 -15.15912 -14.92186 -14.81204 -14.56579 -14.30974 -14.02825 -13.78516 -13.69462 -13.48187 -13.37100 -13.19046 -13.14145 -13.03133 -12.95675 -12.81016 -12.76578 -12.59959 -12.58004 -12.27182 -12.23568 -12.14102 -12.04287 -11.98689 -11.85495 -11.79335 -11.55094 -11.44227 -11.31775 -11.13679 -10.51026 -10.40494 -9.65431 -9.36521 -8.11362 -6.24492 -0.28478 1.42084 1.44354 1.53163 2.08055 2.43723 2.67398 3.04619 3.16874 3.46417 3.70080 3.80296 3.94248 4.01207 4.03174 4.11926 4.14128 4.26966 4.36131 4.47482 4.51031 4.60040 4.64660 4.67260 4.71057 4.74533 4.84056 4.87593 4.93292 4.96942 4.97421 4.98877 5.02991 5.05692 5.07946 5.09327 5.16205 5.20443 5.21552 5.28470 5.33001 5.44803 5.50357 5.62471 5.72788 5.89229 5.97005 6.08156 6.12231 6.23193 6.31802 6.83112 7.44226 8.92654 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019099 B = 0.001870 C = 0.001794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.728249 B =14972.391139 C =15602.028258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.272 3.728 3 H 0.025 0.975 4 C -0.538 4.538 5 H 0.055 0.945 6 C 0.016 3.984 7 N -0.913 5.913 8 Si 0.955 3.045 9 H -0.283 1.283 10 H -0.267 1.267 11 H -0.279 1.279 12 N -0.997 5.997 13 C 0.103 3.897 14 S 2.797 3.203 15 O -1.010 7.010 16 O -1.020 7.020 17 N -1.120 6.120 18 C 0.111 3.889 19 C -0.118 4.118 20 C -0.113 4.113 21 C -0.112 4.112 22 C 0.047 3.953 23 N -0.535 5.535 24 C 0.031 3.969 25 C -0.125 4.125 26 C -0.130 4.130 27 C 0.030 3.970 28 H 0.036 0.964 29 H 0.065 0.935 30 H 0.043 0.957 31 H 0.264 0.736 32 H 0.039 0.961 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.421 0.579 36 H 0.072 0.928 37 H 0.075 0.925 38 H 0.072 0.928 39 H 0.074 0.926 40 H 0.070 0.930 41 H 0.071 0.929 42 H 0.066 0.934 43 H 0.064 0.936 44 H 0.035 0.965 45 H 0.075 0.925 46 H 0.081 0.919 47 H 0.044 0.956 48 H 0.081 0.919 49 H 0.072 0.928 50 H 0.072 0.928 51 H 0.078 0.922 52 H 0.044 0.956 53 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.720 -0.672 25.224 27.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.168 3.832 3 H 0.042 0.958 4 C -0.577 4.577 5 H 0.073 0.927 6 C -0.184 4.184 7 N -0.552 5.552 8 Si 0.781 3.219 9 H -0.209 1.209 10 H -0.192 1.192 11 H -0.204 1.204 12 N -0.839 5.839 13 C -0.043 4.043 14 S 2.806 3.194 15 O -0.994 6.994 16 O -1.004 7.004 17 N -0.883 5.883 18 C -0.014 4.014 19 C -0.157 4.157 20 C -0.152 4.152 21 C -0.149 4.149 22 C -0.081 4.081 23 N -0.259 5.259 24 C -0.097 4.097 25 C -0.163 4.163 26 C -0.169 4.169 27 C -0.098 4.098 28 H 0.055 0.945 29 H 0.084 0.916 30 H 0.062 0.938 31 H 0.073 0.927 32 H 0.058 0.942 33 H 0.099 0.901 34 H 0.097 0.903 35 H 0.256 0.744 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.091 0.909 39 H 0.093 0.907 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.084 0.916 43 H 0.083 0.917 44 H 0.054 0.946 45 H 0.094 0.906 46 H 0.100 0.900 47 H 0.062 0.938 48 H 0.099 0.901 49 H 0.091 0.909 50 H 0.091 0.909 51 H 0.097 0.903 52 H 0.063 0.937 53 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -10.376 -0.616 25.399 27.444 hybrid contribution -0.561 -0.133 -1.699 1.794 sum -10.937 -0.748 23.700 26.113 Atomic orbital electron populations 1.21898 0.96722 1.00239 1.00491 1.18399 0.92321 0.91318 0.81172 0.95751 1.21659 1.31528 1.12984 0.91543 0.92656 1.25642 0.95274 0.95782 1.01657 1.69974 1.37264 1.23699 1.24300 0.85604 0.77919 0.79159 0.79217 1.20930 1.19175 1.20391 1.57555 1.69998 1.21021 1.35288 1.21357 1.01671 0.80415 1.00842 1.01183 0.73616 0.72300 0.72322 1.93509 1.69908 1.61344 1.74605 1.93548 1.76004 1.57426 1.73421 1.55767 1.62316 1.18096 1.52103 1.21511 0.94666 0.93616 0.91650 1.21718 1.00160 0.98616 0.95169 1.21461 0.99570 0.98303 0.95830 1.21562 0.99582 0.98197 0.95601 1.22324 0.98216 0.96247 0.91283 1.64816 1.32710 1.06679 1.21706 1.23275 0.96322 0.93332 0.96751 1.22511 0.99273 0.97211 0.97308 1.22410 0.98252 0.94467 1.01727 1.22930 0.92400 0.96217 0.98206 0.94495 0.91600 0.93769 0.92667 0.94234 0.90128 0.90309 0.74378 0.91009 0.90711 0.90940 0.90709 0.91150 0.91066 0.91557 0.91749 0.94630 0.90610 0.90020 0.93808 0.90063 0.90929 0.90916 0.90345 0.93748 0.90394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.89 8.95 71.98 0.64 -5.25 16 2 C 0.27 13.31 2.62 44.24 0.12 13.42 16 3 H 0.02 1.36 6.91 -2.38 -0.02 1.35 16 4 C -0.54 -29.19 8.37 25.60 0.21 -28.97 16 5 H 0.06 3.00 7.65 -2.91 -0.02 2.98 16 6 C 0.02 0.89 5.30 84.66 0.45 1.33 16 7 N -0.91 -51.26 11.32 21.45 0.24 -51.01 16 8 Si 0.96 43.48 29.54 68.60 2.03 45.50 16 9 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 10 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 11 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 12 N -1.00 -40.32 3.12 -520.46 -1.62 -41.94 16 13 C 0.10 3.45 9.53 127.77 1.22 4.67 16 14 S 2.80 107.47 6.09 -56.49 -0.34 107.12 16 15 O -1.01 -40.86 16.68 -128.00 -2.14 -43.00 16 16 O -1.02 -48.36 16.70 -128.00 -2.14 -50.49 16 17 N -1.12 -30.62 6.05 -187.47 -1.14 -31.76 16 18 C 0.11 2.36 6.25 86.38 0.54 2.90 16 19 C -0.12 -1.87 5.36 30.59 0.16 -1.70 16 20 C -0.11 -1.49 5.21 30.59 0.16 -1.33 16 21 C -0.11 -1.47 4.87 30.59 0.15 -1.32 16 22 C 0.05 0.65 5.03 86.30 0.43 1.08 16 23 N -0.53 -7.88 5.40 -883.07 -4.76 -12.65 16 24 C 0.03 0.40 5.10 86.65 0.44 0.84 16 25 C -0.12 -1.31 7.06 31.80 0.22 -1.09 16 26 C -0.13 -1.29 6.93 31.47 0.22 -1.07 16 27 C 0.03 0.38 6.69 86.45 0.58 0.96 16 28 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.07 3.28 6.07 -2.39 -0.01 3.27 16 30 H 0.04 1.80 6.66 -2.39 -0.02 1.79 16 31 H 0.26 14.09 8.31 -92.71 -0.77 13.32 16 32 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.08 2.15 7.79 -2.38 -0.02 2.13 16 34 H 0.08 2.52 6.43 -2.39 -0.02 2.50 16 35 H 0.42 10.11 8.65 -96.74 -0.84 9.27 16 36 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 37 H 0.07 1.60 7.75 -2.38 -0.02 1.58 16 38 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 40 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 42 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 43 H 0.06 0.85 6.80 -2.38 -0.02 0.83 16 44 H 0.04 0.48 7.81 -2.39 -0.02 0.47 16 45 H 0.08 1.03 8.14 -2.38 -0.02 1.01 16 46 H 0.08 1.06 7.66 -2.39 -0.02 1.04 16 47 H 0.04 0.57 8.00 -2.39 -0.02 0.55 16 48 H 0.08 0.68 8.14 -2.38 -0.02 0.66 16 49 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 50 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 51 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 52 H 0.04 0.54 7.57 -2.39 -0.02 0.52 16 53 H 0.08 0.94 8.14 -2.38 -0.02 0.92 16 Total: -1.00 -69.05 421.55 -4.29 -73.34 By element: Atomic # 1 Polarization: 20.40 SS G_CDS: 0.03 Total: 20.43 kcal Atomic # 6 Polarization: -21.08 SS G_CDS: 5.55 Total: -15.53 kcal Atomic # 7 Polarization: -130.08 SS G_CDS: -7.28 Total: -137.36 kcal Atomic # 8 Polarization: -89.22 SS G_CDS: -4.27 Total: -93.49 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.50 kcal Atomic # 16 Polarization: 107.47 SS G_CDS: -0.34 Total: 107.12 kcal Total: -69.05 -4.29 -73.34 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339036878.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.046 kcal (2) G-P(sol) polarization free energy of solvation -69.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds