Wall clock time and date at job start Wed Apr 1 2020 04:51:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47455 * 2 1 4 4 N 1.46505 * 109.46745 * 120.00086 * 2 1 3 5 5 C 1.34772 * 120.00150 * 155.00494 * 4 2 1 6 6 O 1.21588 * 119.99801 * 359.97438 * 5 4 2 7 7 N 1.34775 * 120.00278 * 180.02562 * 5 4 2 8 8 C 1.46497 * 120.00182 * 179.97438 * 7 5 4 9 9 C 1.50699 * 109.47293 * 179.97438 * 8 7 5 10 10 C 1.38355 * 119.85690 * 89.99845 * 9 8 7 11 11 C 1.37960 * 120.15044 * 180.02562 * 10 9 8 12 12 C 1.39580 * 119.84792 * 0.27628 * 11 10 9 13 13 C 1.47846 * 120.14332 * 179.72342 * 12 11 10 14 14 O 1.21545 * 120.00043 * 141.03988 * 13 12 11 15 15 N 1.34783 * 119.99638 * 321.04424 * 13 12 11 16 16 C 1.46494 * 120.00098 * 4.88507 * 15 13 12 17 17 C 1.46497 * 119.99498 * 184.89051 * 15 13 12 18 18 H 1.08996 * 109.47399 * 359.97438 * 17 15 13 19 19 C 1.52995 * 109.47182 * 239.99514 * 17 15 13 20 20 C 1.50698 * 109.46928 * 119.99754 * 17 15 13 21 21 H 1.08002 * 120.00580 * 34.07391 * 20 17 15 22 22 C 1.37887 * 120.00114 * 214.06553 * 20 17 15 23 23 N 1.31514 * 120.00206 * 183.26857 * 22 20 17 24 24 Si 1.86804 * 119.99604 * 3.27762 * 22 20 17 25 25 H 1.48493 * 109.47309 * 92.92360 * 24 22 20 26 26 H 1.48500 * 109.46740 * 212.92269 * 24 22 20 27 27 H 1.48498 * 109.46980 * 332.91831 * 24 22 20 28 28 C 1.39579 * 119.71020 * 359.46832 * 12 11 10 29 29 C 1.37950 * 119.85372 * 0.51074 * 28 12 11 30 30 H 1.09003 * 109.47538 * 300.00681 * 1 2 3 31 31 H 1.09006 * 109.46842 * 60.00125 * 1 2 3 32 32 H 1.09000 * 109.47560 * 179.97438 * 1 2 3 33 33 H 1.08995 * 109.47170 * 239.99353 * 2 1 3 34 34 H 1.09009 * 109.47221 * 59.99602 * 3 2 1 35 35 H 1.09000 * 109.47351 * 179.97438 * 3 2 1 36 36 H 1.08997 * 109.47195 * 299.99877 * 3 2 1 37 37 H 0.96998 * 120.00129 * 334.99542 * 4 2 1 38 38 H 0.96998 * 120.00001 * 359.97438 * 7 5 4 39 39 H 1.09003 * 109.47014 * 59.99560 * 8 7 5 40 40 H 1.09002 * 109.47035 * 299.99549 * 8 7 5 41 41 H 1.08001 * 119.92674 * 0.04845 * 10 9 8 42 42 H 1.07993 * 120.07384 * 180.02562 * 11 10 9 43 43 H 1.09007 * 109.47229 * 85.04062 * 16 15 13 44 44 H 1.09006 * 109.47006 * 205.03552 * 16 15 13 45 45 H 1.08993 * 109.47562 * 325.04035 * 16 15 13 46 46 H 1.09006 * 109.47366 * 54.85945 * 19 17 15 47 47 H 1.09004 * 109.47611 * 174.85746 * 19 17 15 48 48 H 1.09002 * 109.47539 * 294.86538 * 19 17 15 49 49 H 0.96995 * 119.99790 * 180.02562 * 23 22 20 50 50 H 1.07996 * 120.06803 * 180.22344 * 28 12 11 51 51 H 1.08000 * 119.93094 * 179.74178 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0182 -0.6907 1.1962 5 6 3.2402 -1.2592 1.1946 6 8 3.9372 -1.1992 0.2001 7 7 3.6892 -1.8950 2.2948 8 6 5.0172 -2.5134 2.2928 9 6 5.2757 -3.1526 3.6328 10 6 4.9154 -4.4710 3.8481 11 6 5.1488 -5.0620 5.0726 12 6 5.7446 -4.3251 6.0974 13 6 5.9922 -4.9502 7.4142 14 8 7.0158 -4.7034 8.0212 15 7 5.0827 -5.7937 7.9413 16 6 3.9006 -6.1749 7.1646 17 6 5.2763 -6.3292 9.2910 18 1 6.2037 -5.9366 9.7081 19 6 5.3522 -7.8560 9.2280 20 6 4.1189 -5.9195 10.1648 21 1 3.1281 -5.8337 9.7436 22 6 4.3247 -5.6542 11.5022 23 7 3.3051 -5.3594 12.2787 24 14 6.0521 -5.7135 12.2110 25 1 6.6515 -4.3556 12.1683 26 1 5.9938 -6.1848 13.6180 27 1 6.8839 -6.6472 11.4102 28 6 6.1106 -2.9972 5.8719 29 6 5.8720 -2.4183 4.6426 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8901 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.6767 1.9564 0.8900 35 1 3.1300 1.4424 0.0005 36 1 1.6768 1.9563 -0.8900 37 1 1.4621 -0.7387 1.9895 38 1 3.1330 -1.9431 3.0881 39 1 5.7727 -1.7511 2.1024 40 1 5.0630 -3.2732 1.5126 41 1 4.4507 -5.0388 3.0556 42 1 4.8674 -6.0913 5.2392 43 1 4.1478 -7.0147 6.5151 44 1 3.0979 -6.4644 7.8430 45 1 3.5763 -5.3296 6.5578 46 1 6.1307 -8.1524 8.5248 47 1 5.5871 -8.2494 10.2170 48 1 4.3930 -8.2541 8.8969 49 1 3.4500 -5.1725 13.2193 50 1 6.5753 -2.4227 6.6596 51 1 6.1509 -1.3897 4.4681 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000349322460.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:51 Heat of formation + Delta-G solvation = -37.225880 kcal Electronic energy + Delta-G solvation = -29898.266177 eV Core-core repulsion = 25797.805162 eV Total energy + Delta-G solvation = -4100.461015 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.47783 -39.99243 -38.39938 -36.53323 -35.55858 -34.95953 -32.97572 -32.22450 -31.26317 -30.92639 -29.88113 -27.61871 -26.72549 -26.23509 -25.29569 -22.92035 -22.64262 -21.86317 -20.96929 -20.79191 -18.89598 -18.82868 -17.41995 -16.88358 -16.48331 -16.13140 -15.86467 -15.57786 -15.24968 -15.01463 -14.73444 -14.53171 -14.26503 -14.24042 -13.76084 -13.60192 -13.38250 -13.01291 -12.80769 -12.76368 -12.67903 -12.61289 -12.50922 -12.41641 -12.28047 -11.85478 -11.77696 -11.60552 -11.37179 -11.35157 -11.13580 -10.91550 -10.76974 -10.51385 -10.47876 -9.80385 -9.58172 -9.37869 -9.21982 -9.13635 -9.00461 -8.82885 -8.66689 -7.77008 -6.22477 -4.25202 0.84372 1.31587 2.45534 2.96918 3.16696 3.26186 3.34969 3.41407 3.63574 3.90066 4.06121 4.33266 4.41135 4.46809 4.65987 4.69230 4.85099 4.86424 4.90513 5.13943 5.16397 5.20284 5.27519 5.29941 5.38141 5.40535 5.52658 5.54986 5.66029 5.69071 5.75148 5.82560 5.88341 5.95539 6.14046 6.17789 6.23194 6.23814 6.29289 6.34537 6.39176 6.41064 6.54004 6.64079 6.79971 6.87531 7.02681 7.39781 7.56140 7.73406 8.04374 8.34467 8.41542 8.76730 8.81794 9.39595 10.89202 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017029 B = 0.001971 C = 0.001898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.820809 B =14205.196330 C =14751.272516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.154 3.846 3 C -0.165 4.165 4 N -0.744 5.744 5 C 0.704 3.296 6 O -0.593 6.593 7 N -0.742 5.742 8 C 0.182 3.818 9 C -0.102 4.102 10 C -0.108 4.108 11 C -0.098 4.098 12 C -0.103 4.103 13 C 0.543 3.457 14 O -0.550 6.550 15 N -0.579 5.579 16 C 0.077 3.923 17 C 0.221 3.779 18 H 0.067 0.933 19 C -0.146 4.146 20 C -0.526 4.526 21 H 0.079 0.921 22 C 0.079 3.921 23 N -0.890 5.890 24 Si 0.873 3.127 25 H -0.273 1.273 26 H -0.286 1.286 27 H -0.260 1.260 28 C -0.071 4.071 29 C -0.106 4.106 30 H 0.061 0.939 31 H 0.073 0.927 32 H 0.062 0.938 33 H 0.087 0.913 34 H 0.055 0.945 35 H 0.061 0.939 36 H 0.064 0.936 37 H 0.396 0.604 38 H 0.399 0.601 39 H 0.075 0.925 40 H 0.075 0.925 41 H 0.127 0.873 42 H 0.139 0.861 43 H 0.046 0.954 44 H 0.083 0.917 45 H 0.063 0.937 46 H 0.027 0.973 47 H 0.055 0.945 48 H 0.050 0.950 49 H 0.267 0.733 50 H 0.133 0.867 51 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.712 7.552 -23.172 24.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.049 3.951 3 C -0.223 4.223 4 N -0.400 5.400 5 C 0.404 3.596 6 O -0.471 6.471 7 N -0.397 5.397 8 C 0.059 3.941 9 C -0.103 4.103 10 C -0.126 4.126 11 C -0.116 4.116 12 C -0.106 4.106 13 C 0.330 3.670 14 O -0.430 6.430 15 N -0.309 5.309 16 C -0.066 4.066 17 C 0.120 3.880 18 H 0.085 0.915 19 C -0.205 4.205 20 C -0.564 4.564 21 H 0.097 0.903 22 C -0.125 4.125 23 N -0.527 5.527 24 Si 0.700 3.300 25 H -0.199 1.199 26 H -0.212 1.212 27 H -0.184 1.184 28 C -0.089 4.089 29 C -0.125 4.125 30 H 0.080 0.920 31 H 0.091 0.909 32 H 0.081 0.919 33 H 0.106 0.894 34 H 0.074 0.926 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.230 0.770 38 H 0.233 0.767 39 H 0.093 0.907 40 H 0.093 0.907 41 H 0.145 0.855 42 H 0.156 0.844 43 H 0.064 0.936 44 H 0.102 0.898 45 H 0.081 0.919 46 H 0.046 0.954 47 H 0.074 0.926 48 H 0.069 0.931 49 H 0.077 0.923 50 H 0.151 0.849 51 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -3.602 7.749 -23.569 25.070 hybrid contribution 0.158 -0.028 1.355 1.365 sum -3.444 7.721 -22.214 23.768 Atomic orbital electron populations 1.22090 0.94138 1.02700 1.02966 1.20787 0.93570 0.92662 0.88032 1.22216 1.02280 0.95913 1.01933 1.45274 1.17195 1.60044 1.17438 1.15951 0.81790 0.78337 0.83507 1.90925 1.57257 1.65668 1.33274 1.45218 1.19412 1.59805 1.15297 1.20025 0.83438 0.96876 0.93775 1.19936 1.00585 0.94610 0.95173 1.20985 1.00133 0.94463 0.97049 1.21722 0.96724 1.00768 0.92417 1.20264 1.00147 0.95283 0.94913 1.18348 0.83928 0.79778 0.84910 1.90729 1.26969 1.62973 1.62337 1.48257 1.20900 1.44282 1.17445 1.21960 0.89579 0.98899 0.96203 1.19412 0.99232 0.90490 0.78833 0.91543 1.22220 0.99608 0.98340 1.00353 1.21107 0.94713 1.47336 0.93269 0.90330 1.24956 0.96938 0.93667 0.96894 1.69883 1.30459 1.46273 1.06097 0.86899 0.85222 0.79630 0.78263 1.19859 1.21175 1.18431 1.21241 0.96763 0.93795 0.97149 1.21000 0.99128 0.99838 0.92501 0.92022 0.90856 0.91923 0.89447 0.92570 0.91994 0.91715 0.77036 0.76716 0.90703 0.90665 0.85503 0.84356 0.93599 0.89831 0.91875 0.95434 0.92557 0.93121 0.92342 0.84936 0.85487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.69 9.38 37.16 0.35 -0.34 16 2 C 0.15 1.04 3.18 -67.93 -0.22 0.83 16 3 C -0.16 -1.10 9.48 37.16 0.35 -0.74 16 4 N -0.74 -5.36 5.08 -58.68 -0.30 -5.66 16 5 C 0.70 7.21 8.53 -86.92 -0.74 6.47 16 6 O -0.59 -8.44 16.01 5.29 0.08 -8.35 16 7 N -0.74 -6.22 5.55 -66.42 -0.37 -6.59 16 8 C 0.18 1.65 5.79 -5.20 -0.03 1.62 16 9 C -0.10 -1.00 5.25 -104.53 -0.55 -1.55 16 10 C -0.11 -1.07 9.68 -39.64 -0.38 -1.46 16 11 C -0.10 -1.20 7.57 -39.18 -0.30 -1.50 16 12 C -0.10 -1.60 5.25 -104.97 -0.55 -2.15 16 13 C 0.54 11.07 7.36 -12.33 -0.09 10.97 16 14 O -0.55 -13.29 16.24 5.33 0.09 -13.20 16 15 N -0.58 -11.77 2.75 -176.39 -0.49 -12.26 16 16 C 0.08 1.21 7.98 59.84 0.48 1.69 16 17 C 0.22 5.21 2.20 -69.09 -0.15 5.06 16 18 H 0.07 1.74 4.01 -51.93 -0.21 1.53 16 19 C -0.15 -3.02 9.08 37.15 0.34 -2.68 16 20 C -0.53 -14.08 8.70 -34.44 -0.30 -14.38 16 21 H 0.08 2.22 6.90 -52.49 -0.36 1.85 16 22 C 0.08 2.23 5.47 -17.82 -0.10 2.13 16 23 N -0.89 -26.23 13.96 55.43 0.77 -25.46 16 24 Si 0.87 21.73 26.99 -169.99 -4.59 17.14 16 25 H -0.27 -6.94 7.11 56.52 0.40 -6.54 16 26 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 27 H -0.26 -6.27 6.47 56.52 0.37 -5.91 16 28 C -0.07 -0.99 9.63 -39.19 -0.38 -1.36 16 29 C -0.11 -1.15 9.68 -39.64 -0.38 -1.53 16 30 H 0.06 0.23 8.14 -51.93 -0.42 -0.20 16 31 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 33 H 0.09 0.75 7.58 -51.93 -0.39 0.36 16 34 H 0.06 0.34 8.14 -51.92 -0.42 -0.09 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.40 1.91 8.62 -40.82 -0.35 1.56 16 38 H 0.40 2.65 8.48 -40.82 -0.35 2.31 16 39 H 0.07 0.71 8.08 -51.93 -0.42 0.29 16 40 H 0.08 0.70 8.08 -51.93 -0.42 0.28 16 41 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 42 H 0.14 1.55 5.26 -52.49 -0.28 1.27 16 43 H 0.05 0.59 6.86 -51.93 -0.36 0.23 16 44 H 0.08 1.42 6.63 -51.93 -0.34 1.08 16 45 H 0.06 0.87 5.84 -51.93 -0.30 0.57 16 46 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.06 1.17 7.88 -51.93 -0.41 0.76 16 48 H 0.05 0.96 7.84 -51.93 -0.41 0.55 16 49 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 50 H 0.13 1.92 8.05 -52.49 -0.42 1.50 16 51 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 LS Contribution 413.02 15.07 6.22 6.22 Total: -1.00 -34.82 413.02 -9.22 -44.04 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: -8.00 Total: 3.05 kcal Atomic # 6 Polarization: 3.71 SS G_CDS: -2.65 Total: 1.06 kcal Atomic # 7 Polarization: -49.58 SS G_CDS: -0.38 Total: -49.96 kcal Atomic # 8 Polarization: -21.73 SS G_CDS: 0.17 Total: -21.55 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.59 Total: 17.14 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -34.82 -9.22 -44.04 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349322460.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.813 kcal (2) G-P(sol) polarization free energy of solvation -34.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds