Wall clock time and date at job start Wed Apr 1 2020 04:51:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47455 * 2 1 4 4 N 1.46505 * 109.46745 * 120.00086 * 2 1 3 5 5 C 1.34772 * 120.00150 * 155.00494 * 4 2 1 6 6 O 1.21588 * 119.99801 * 359.97438 * 5 4 2 7 7 N 1.34775 * 120.00278 * 180.02562 * 5 4 2 8 8 C 1.46497 * 120.00182 * 179.97438 * 7 5 4 9 9 C 1.50699 * 109.47293 * 179.97438 * 8 7 5 10 10 C 1.38355 * 119.85690 * 89.99845 * 9 8 7 11 11 C 1.37960 * 120.15044 * 180.02562 * 10 9 8 12 12 C 1.39580 * 119.84792 * 0.27628 * 11 10 9 13 13 C 1.47846 * 120.14332 * 179.72342 * 12 11 10 14 14 O 1.21545 * 120.00043 * 141.03988 * 13 12 11 15 15 N 1.34783 * 119.99638 * 321.04424 * 13 12 11 16 16 C 1.46494 * 120.00098 * 4.88507 * 15 13 12 17 17 C 1.46497 * 119.99498 * 184.89051 * 15 13 12 18 18 H 1.08996 * 109.47399 * 359.97438 * 17 15 13 19 19 C 1.52995 * 109.47182 * 239.99514 * 17 15 13 20 20 C 1.50698 * 109.46928 * 119.99754 * 17 15 13 21 21 H 1.08002 * 120.00580 * 34.07391 * 20 17 15 22 22 C 1.37887 * 120.00114 * 214.06553 * 20 17 15 23 23 N 1.31514 * 120.00206 * 183.26857 * 22 20 17 24 24 Si 1.86804 * 119.99604 * 3.27762 * 22 20 17 25 25 H 1.48493 * 109.47309 * 92.92360 * 24 22 20 26 26 H 1.48500 * 109.46740 * 212.92269 * 24 22 20 27 27 H 1.48498 * 109.46980 * 332.91831 * 24 22 20 28 28 C 1.39579 * 119.71020 * 359.46832 * 12 11 10 29 29 C 1.37950 * 119.85372 * 0.51074 * 28 12 11 30 30 H 1.09003 * 109.47538 * 300.00681 * 1 2 3 31 31 H 1.09006 * 109.46842 * 60.00125 * 1 2 3 32 32 H 1.09000 * 109.47560 * 179.97438 * 1 2 3 33 33 H 1.08995 * 109.47170 * 239.99353 * 2 1 3 34 34 H 1.09009 * 109.47221 * 59.99602 * 3 2 1 35 35 H 1.09000 * 109.47351 * 179.97438 * 3 2 1 36 36 H 1.08997 * 109.47195 * 299.99877 * 3 2 1 37 37 H 0.96998 * 120.00129 * 334.99542 * 4 2 1 38 38 H 0.96998 * 120.00001 * 359.97438 * 7 5 4 39 39 H 1.09003 * 109.47014 * 59.99560 * 8 7 5 40 40 H 1.09002 * 109.47035 * 299.99549 * 8 7 5 41 41 H 1.08001 * 119.92674 * 0.04845 * 10 9 8 42 42 H 1.07993 * 120.07384 * 180.02562 * 11 10 9 43 43 H 1.09007 * 109.47229 * 85.04062 * 16 15 13 44 44 H 1.09006 * 109.47006 * 205.03552 * 16 15 13 45 45 H 1.08993 * 109.47562 * 325.04035 * 16 15 13 46 46 H 1.09006 * 109.47366 * 54.85945 * 19 17 15 47 47 H 1.09004 * 109.47611 * 174.85746 * 19 17 15 48 48 H 1.09002 * 109.47539 * 294.86538 * 19 17 15 49 49 H 0.96995 * 119.99790 * 180.02562 * 23 22 20 50 50 H 1.07996 * 120.06803 * 180.22344 * 28 12 11 51 51 H 1.08000 * 119.93094 * 179.74178 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0182 -0.6907 1.1962 5 6 3.2402 -1.2592 1.1946 6 8 3.9372 -1.1992 0.2001 7 7 3.6892 -1.8950 2.2948 8 6 5.0172 -2.5134 2.2928 9 6 5.2757 -3.1526 3.6328 10 6 4.9154 -4.4710 3.8481 11 6 5.1488 -5.0620 5.0726 12 6 5.7446 -4.3251 6.0974 13 6 5.9922 -4.9502 7.4142 14 8 7.0158 -4.7034 8.0212 15 7 5.0827 -5.7937 7.9413 16 6 3.9006 -6.1749 7.1646 17 6 5.2763 -6.3292 9.2910 18 1 6.2037 -5.9366 9.7081 19 6 5.3522 -7.8560 9.2280 20 6 4.1189 -5.9195 10.1648 21 1 3.1281 -5.8337 9.7436 22 6 4.3247 -5.6542 11.5022 23 7 3.3051 -5.3594 12.2787 24 14 6.0521 -5.7135 12.2110 25 1 6.6515 -4.3556 12.1683 26 1 5.9938 -6.1848 13.6180 27 1 6.8839 -6.6472 11.4102 28 6 6.1106 -2.9972 5.8719 29 6 5.8720 -2.4183 4.6426 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8901 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.6767 1.9564 0.8900 35 1 3.1300 1.4424 0.0005 36 1 1.6768 1.9563 -0.8900 37 1 1.4621 -0.7387 1.9895 38 1 3.1330 -1.9431 3.0881 39 1 5.7727 -1.7511 2.1024 40 1 5.0630 -3.2732 1.5126 41 1 4.4507 -5.0388 3.0556 42 1 4.8674 -6.0913 5.2392 43 1 4.1478 -7.0147 6.5151 44 1 3.0979 -6.4644 7.8430 45 1 3.5763 -5.3296 6.5578 46 1 6.1307 -8.1524 8.5248 47 1 5.5871 -8.2494 10.2170 48 1 4.3930 -8.2541 8.8969 49 1 3.4500 -5.1725 13.2193 50 1 6.5753 -2.4227 6.6596 51 1 6.1509 -1.3897 4.4681 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000349322460.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:50 Heat of formation + Delta-G solvation = -61.477655 kcal Electronic energy + Delta-G solvation = -29899.317813 eV Core-core repulsion = 25797.805162 eV Total energy + Delta-G solvation = -4101.512651 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.49306 -41.02919 -39.60024 -37.27203 -37.15710 -35.85570 -34.78893 -33.31609 -32.43319 -31.85303 -31.13430 -28.05557 -27.95139 -27.39480 -27.20076 -24.10133 -23.58817 -22.64962 -22.08253 -21.62170 -20.39326 -19.58060 -19.26289 -18.08676 -17.66650 -17.47485 -16.84331 -16.66683 -16.24517 -16.11049 -15.81012 -15.61800 -15.34304 -15.22636 -14.90142 -14.65743 -14.52683 -14.31479 -14.18393 -13.97964 -13.91337 -13.65680 -13.47445 -13.16598 -13.09893 -13.08700 -13.02521 -12.95204 -12.66777 -12.47081 -12.33093 -12.25941 -11.95212 -11.86398 -11.77859 -11.36448 -11.28883 -10.84114 -10.78915 -10.35419 -9.95590 -9.86064 -9.75935 -9.39296 -8.39000 -6.42841 -0.16938 0.39775 1.24951 1.31721 1.40795 1.64158 1.90608 2.19420 2.23936 2.26445 2.79354 3.02315 3.41813 3.51227 3.71286 3.82651 3.98783 3.99677 4.20258 4.31046 4.34465 4.37727 4.41406 4.46316 4.58586 4.66027 4.68634 4.72975 4.76882 4.78350 4.80397 4.87151 4.97215 4.97323 5.06101 5.06508 5.12036 5.24817 5.29560 5.31489 5.36125 5.43237 5.46111 5.51075 5.51502 5.65577 5.76241 5.88338 6.04138 6.13504 6.62485 6.67345 7.11970 7.18443 7.29330 7.62031 8.76014 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017029 B = 0.001971 C = 0.001898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.820809 B =14205.196330 C =14751.272516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.151 3.849 3 C -0.160 4.160 4 N -0.732 5.732 5 C 0.700 3.300 6 O -0.636 6.636 7 N -0.732 5.732 8 C 0.187 3.813 9 C -0.083 4.083 10 C -0.094 4.094 11 C -0.092 4.092 12 C -0.129 4.129 13 C 0.536 3.464 14 O -0.602 6.602 15 N -0.587 5.587 16 C 0.075 3.925 17 C 0.219 3.781 18 H 0.039 0.961 19 C -0.139 4.139 20 C -0.518 4.518 21 H 0.057 0.943 22 C 0.029 3.971 23 N -0.932 5.932 24 Si 0.922 3.078 25 H -0.286 1.286 26 H -0.274 1.274 27 H -0.250 1.250 28 C -0.087 4.087 29 C -0.098 4.098 30 H 0.072 0.928 31 H 0.083 0.917 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.033 0.967 36 H 0.078 0.922 37 H 0.410 0.590 38 H 0.410 0.590 39 H 0.072 0.928 40 H 0.080 0.920 41 H 0.160 0.840 42 H 0.153 0.847 43 H 0.084 0.916 44 H 0.066 0.934 45 H 0.084 0.916 46 H 0.046 0.954 47 H 0.049 0.951 48 H 0.065 0.935 49 H 0.268 0.732 50 H 0.114 0.886 51 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.711 7.174 -25.823 27.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.046 3.954 3 C -0.219 4.219 4 N -0.388 5.388 5 C 0.400 3.600 6 O -0.518 6.518 7 N -0.388 5.388 8 C 0.063 3.937 9 C -0.083 4.083 10 C -0.112 4.112 11 C -0.110 4.110 12 C -0.132 4.132 13 C 0.325 3.675 14 O -0.486 6.486 15 N -0.316 5.316 16 C -0.067 4.067 17 C 0.117 3.883 18 H 0.057 0.943 19 C -0.197 4.197 20 C -0.557 4.557 21 H 0.075 0.925 22 C -0.170 4.170 23 N -0.571 5.571 24 Si 0.747 3.253 25 H -0.212 1.212 26 H -0.199 1.199 27 H -0.174 1.174 28 C -0.106 4.106 29 C -0.116 4.116 30 H 0.091 0.909 31 H 0.102 0.898 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.053 0.947 36 H 0.096 0.904 37 H 0.246 0.754 38 H 0.246 0.754 39 H 0.090 0.910 40 H 0.098 0.902 41 H 0.178 0.822 42 H 0.170 0.830 43 H 0.102 0.898 44 H 0.085 0.915 45 H 0.102 0.898 46 H 0.065 0.935 47 H 0.068 0.932 48 H 0.084 0.916 49 H 0.078 0.922 50 H 0.132 0.868 51 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -4.658 7.353 -26.216 27.623 hybrid contribution 0.405 0.164 2.011 2.058 sum -4.254 7.517 -24.205 25.700 Atomic orbital electron populations 1.22030 0.91834 1.03114 1.04049 1.20862 0.95257 0.92238 0.87031 1.22173 1.00429 0.96186 1.03097 1.45217 1.16350 1.59087 1.18174 1.16132 0.82238 0.78429 0.83209 1.90901 1.58621 1.67297 1.34945 1.45053 1.19248 1.59243 1.15248 1.19955 0.83705 0.96931 0.93095 1.20024 0.98910 0.94524 0.94881 1.21284 0.98777 0.94408 0.96715 1.21815 0.95899 1.01107 0.92178 1.19972 1.03602 0.96177 0.93445 1.19100 0.83024 0.78975 0.86366 1.90682 1.29077 1.64472 1.64320 1.48200 1.22396 1.44404 1.16601 1.22213 0.87385 1.01111 0.96010 1.19210 0.96402 0.92482 0.80237 0.94254 1.22078 1.01203 0.95713 1.00729 1.21334 0.94889 1.45898 0.93531 0.92494 1.25600 0.99706 0.94107 0.97623 1.69976 1.32097 1.48535 1.06519 0.86118 0.81783 0.79045 0.78311 1.21226 1.19916 1.17401 1.21202 0.97695 0.93515 0.98149 1.21129 0.98430 1.00749 0.91304 0.90913 0.89800 0.91826 0.91584 0.91643 0.94725 0.90351 0.75417 0.75434 0.91013 0.90202 0.82235 0.82998 0.89832 0.91487 0.89774 0.93465 0.93154 0.91555 0.92225 0.86768 0.83572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.38 71.98 0.68 -0.25 16 2 C 0.15 1.81 3.18 44.99 0.14 1.96 16 3 C -0.16 -1.93 9.48 71.98 0.68 -1.25 16 4 N -0.73 -9.10 5.08 -457.83 -2.33 -11.42 16 5 C 0.70 13.07 8.53 179.06 1.53 14.59 16 6 O -0.64 -17.54 16.01 -3.99 -0.06 -17.61 16 7 N -0.73 -10.21 5.55 -482.30 -2.68 -12.88 16 8 C 0.19 2.80 5.79 85.63 0.50 3.30 16 9 C -0.08 -1.33 5.25 -19.81 -0.10 -1.43 16 10 C -0.09 -1.47 9.68 22.23 0.22 -1.25 16 11 C -0.09 -1.96 7.57 22.53 0.17 -1.79 16 12 C -0.13 -3.89 5.25 -20.09 -0.11 -4.00 16 13 C 0.54 21.99 7.36 86.79 0.64 22.62 16 14 O -0.60 -30.10 16.24 -3.86 -0.06 -30.17 16 15 N -0.59 -23.62 2.75 -830.25 -2.29 -25.90 16 16 C 0.07 2.19 7.98 127.77 1.02 3.21 16 17 C 0.22 10.36 2.20 44.24 0.10 10.46 16 18 H 0.04 2.09 4.01 -2.39 -0.01 2.08 16 19 C -0.14 -5.53 9.08 71.98 0.65 -4.87 16 20 C -0.52 -28.25 8.70 25.60 0.22 -28.02 16 21 H 0.06 3.29 6.90 -2.91 -0.02 3.27 16 22 C 0.03 1.68 5.47 84.66 0.46 2.15 16 23 N -0.93 -56.27 13.96 21.45 0.30 -55.97 16 24 Si 0.92 45.81 26.99 68.60 1.85 47.66 16 25 H -0.29 -14.67 7.11 99.48 0.71 -13.96 16 26 H -0.27 -12.92 7.11 99.48 0.71 -12.22 16 27 H -0.25 -11.90 6.47 99.48 0.64 -11.26 16 28 C -0.09 -2.38 9.63 22.53 0.22 -2.16 16 29 C -0.10 -1.91 9.68 22.23 0.22 -1.69 16 30 H 0.07 0.31 8.14 -2.39 -0.02 0.29 16 31 H 0.08 0.36 8.14 -2.38 -0.02 0.34 16 32 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 33 H 0.07 1.10 7.58 -2.39 -0.02 1.08 16 34 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 35 H 0.03 0.61 8.14 -2.39 -0.02 0.59 16 36 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.41 2.83 8.62 -92.71 -0.80 2.04 16 38 H 0.41 4.05 8.48 -92.71 -0.79 3.27 16 39 H 0.07 1.18 8.08 -2.39 -0.02 1.17 16 40 H 0.08 1.20 8.08 -2.39 -0.02 1.19 16 41 H 0.16 1.57 8.06 -2.91 -0.02 1.55 16 42 H 0.15 2.78 5.26 -2.91 -0.02 2.77 16 43 H 0.08 1.83 6.86 -2.38 -0.02 1.82 16 44 H 0.07 2.20 6.63 -2.38 -0.02 2.19 16 45 H 0.08 2.11 5.84 -2.39 -0.01 2.10 16 46 H 0.05 1.68 8.14 -2.38 -0.02 1.66 16 47 H 0.05 2.04 7.88 -2.39 -0.02 2.02 16 48 H 0.07 2.40 7.84 -2.39 -0.02 2.38 16 49 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 50 H 0.11 3.48 8.05 -2.91 -0.02 3.46 16 51 H 0.15 2.28 8.06 -2.91 -0.02 2.25 16 Total: -1.00 -79.76 413.02 1.27 -78.49 By element: Atomic # 1 Polarization: 16.95 SS G_CDS: -0.69 Total: 16.26 kcal Atomic # 6 Polarization: 4.32 SS G_CDS: 7.23 Total: 11.55 kcal Atomic # 7 Polarization: -99.19 SS G_CDS: -6.99 Total: -106.18 kcal Atomic # 8 Polarization: -47.64 SS G_CDS: -0.13 Total: -47.77 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 1.85 Total: 47.66 kcal Total: -79.76 1.27 -78.49 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349322460.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.010 kcal (2) G-P(sol) polarization free energy of solvation -79.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds