Wall clock time and date at job start Wed Apr 1 2020 04:51:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.46976 * 2 1 4 4 N 1.46496 * 109.46974 * 120.00317 * 2 1 3 5 5 C 1.34786 * 119.99805 * 154.99991 * 4 2 1 6 6 O 1.21587 * 120.00025 * 0.02562 * 5 4 2 7 7 N 1.34770 * 119.99889 * 179.97438 * 5 4 2 8 8 C 1.46499 * 119.99963 * 180.02562 * 7 5 4 9 9 C 1.50707 * 109.47211 * 180.02562 * 8 7 5 10 10 C 1.38356 * 119.85634 * 89.99719 * 9 8 7 11 11 C 1.37956 * 120.14521 * 179.97438 * 10 9 8 12 12 C 1.39573 * 119.85232 * 0.02619 * 11 10 9 13 13 C 1.47850 * 120.14390 * 179.97438 * 12 11 10 14 14 O 1.21550 * 120.00261 * 221.41882 * 13 12 11 15 15 N 1.34774 * 119.99591 * 41.42781 * 13 12 11 16 16 C 1.46497 * 120.00288 * 355.46915 * 15 13 12 17 17 C 1.46501 * 119.99983 * 175.47234 * 15 13 12 18 18 H 1.09000 * 109.47070 * 359.97438 * 17 15 13 19 19 C 1.53000 * 109.47238 * 119.99547 * 17 15 13 20 20 C 1.50700 * 109.47427 * 239.99753 * 17 15 13 21 21 H 1.08005 * 119.99850 * 359.97438 * 20 17 15 22 22 C 1.37874 * 120.00297 * 179.97438 * 20 17 15 23 23 N 1.31521 * 119.99774 * 0.02562 * 22 20 17 24 24 Si 1.86796 * 119.99955 * 179.97438 * 22 20 17 25 25 H 1.48502 * 109.46936 * 60.00480 * 24 22 20 26 26 H 1.48505 * 109.47141 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.47381 * 300.00245 * 24 22 20 28 28 C 1.39574 * 119.71401 * 0.24929 * 12 11 10 29 29 C 1.37962 * 119.84836 * 359.47185 * 28 12 11 30 30 H 1.08998 * 109.47070 * 299.99720 * 1 2 3 31 31 H 1.08999 * 109.47232 * 59.99998 * 1 2 3 32 32 H 1.09000 * 109.47042 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47070 * 240.00279 * 2 1 3 34 34 H 1.08998 * 109.46993 * 60.00232 * 3 2 1 35 35 H 1.08999 * 109.47355 * 179.97438 * 3 2 1 36 36 H 1.09003 * 109.47621 * 300.00087 * 3 2 1 37 37 H 0.96995 * 120.00422 * 334.99985 * 4 2 1 38 38 H 0.97005 * 120.00221 * 0.02562 * 7 5 4 39 39 H 1.09000 * 109.47230 * 60.00052 * 8 7 5 40 40 H 1.09001 * 109.47217 * 299.99774 * 8 7 5 41 41 H 1.08003 * 119.92545 * 0.02562 * 10 9 8 42 42 H 1.07997 * 120.07398 * 179.97438 * 11 10 9 43 43 H 1.09003 * 109.47397 * 275.16978 * 16 15 13 44 44 H 1.09000 * 109.47155 * 35.17146 * 16 15 13 45 45 H 1.08998 * 109.47576 * 155.17677 * 16 15 13 46 46 H 1.08998 * 109.46970 * 180.02562 * 19 17 15 47 47 H 1.09004 * 109.46983 * 300.00064 * 19 17 15 48 48 H 1.09000 * 109.46893 * 60.00133 * 19 17 15 49 49 H 0.97002 * 119.99711 * 180.02562 * 23 22 20 50 50 H 1.08002 * 120.07854 * 179.72536 * 28 12 11 51 51 H 1.08005 * 119.92467 * 180.27383 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 3.2403 -1.2593 1.1943 6 8 3.9376 -1.1985 0.2001 7 7 3.6898 -1.8942 2.2948 8 6 5.0182 -2.5117 2.2930 9 6 5.2768 -3.1512 3.6330 10 6 4.9172 -4.4699 3.8477 11 6 5.1516 -5.0614 5.0718 12 6 5.7524 -4.3263 6.0949 13 6 6.0061 -4.9536 7.4095 14 8 5.7970 -4.3293 8.4313 15 7 6.4693 -6.2175 7.4748 16 6 6.6272 -7.0040 6.2490 17 6 6.8147 -6.8050 8.7716 18 1 6.6329 -6.0756 9.5609 19 6 5.9534 -8.0459 9.0151 20 6 8.2703 -7.1954 8.7746 21 1 8.8773 -7.0234 7.8980 22 6 8.8271 -7.7720 9.8964 23 7 8.0878 -7.9818 10.9637 24 14 10.6312 -8.2564 9.8998 25 1 11.4674 -7.0524 9.6626 26 1 10.9817 -8.8507 11.2148 27 1 10.8788 -9.2506 8.8249 28 6 6.1074 -2.9947 5.8736 29 6 5.8727 -2.4170 4.6429 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.6766 1.9562 0.8900 35 1 3.1299 1.4425 0.0005 36 1 1.6766 1.9564 -0.8900 37 1 1.4622 -0.7388 1.9894 38 1 3.1336 -1.9423 3.0881 39 1 5.7732 -1.7490 2.1023 40 1 5.0645 -3.2718 1.5131 41 1 4.4528 -5.0376 3.0550 42 1 4.8701 -6.0906 5.2383 43 1 5.6773 -7.4736 5.9935 44 1 6.9395 -6.3497 5.4351 45 1 7.3824 -7.7742 6.4062 46 1 6.2101 -8.4827 9.9801 47 1 4.9006 -7.7635 9.0130 48 1 6.1356 -8.7752 8.2257 49 1 8.4797 -8.3871 11.7531 50 1 6.5685 -2.4191 6.6626 51 1 6.1510 -1.3880 4.4689 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000349322461.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:54 Heat of formation + Delta-G solvation = -40.075467 kcal Electronic energy + Delta-G solvation = -29668.174844 eV Core-core repulsion = 25567.590261 eV Total energy + Delta-G solvation = -4100.584583 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.47256 -39.93359 -38.31881 -36.54665 -35.42852 -34.95596 -33.06772 -32.22464 -31.09300 -30.86665 -29.22727 -27.64526 -26.65216 -26.10122 -25.24583 -22.88929 -22.63403 -21.87738 -20.99184 -20.82989 -18.90744 -18.86161 -16.95867 -16.85520 -16.31526 -16.05551 -15.88373 -15.39518 -15.18458 -15.05696 -14.73497 -14.64441 -14.27619 -14.09591 -13.86453 -13.59791 -13.36497 -13.02757 -12.81421 -12.75614 -12.63104 -12.52724 -12.51144 -12.27466 -11.80340 -11.72772 -11.62094 -11.40477 -11.37341 -11.10208 -10.98312 -10.86534 -10.72658 -10.49219 -10.29960 -10.20367 -9.59723 -9.26714 -9.15400 -9.13595 -8.99025 -8.79377 -8.45848 -7.66574 -6.10681 -4.19152 0.87555 1.33353 2.44549 2.95448 3.22270 3.26193 3.31413 3.33464 3.71515 3.95113 4.07041 4.36500 4.41473 4.45654 4.63639 4.71272 4.82489 4.89319 4.97990 5.13715 5.17856 5.20770 5.25233 5.32701 5.35522 5.41027 5.50451 5.57287 5.66517 5.72047 5.79818 5.86202 5.89029 5.99910 6.15229 6.20597 6.22378 6.33131 6.40709 6.43540 6.62273 6.71841 6.78076 6.83822 7.01964 7.36019 7.47999 7.67314 7.71656 7.97078 8.14690 8.32958 8.44526 8.76871 8.95602 9.47363 10.94596 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.028120 B = 0.001709 C = 0.001688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.494615 B =16383.757428 C =16587.745249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.154 3.846 3 C -0.165 4.165 4 N -0.744 5.744 5 C 0.704 3.296 6 O -0.592 6.592 7 N -0.742 5.742 8 C 0.182 3.818 9 C -0.104 4.104 10 C -0.107 4.107 11 C -0.097 4.097 12 C -0.101 4.101 13 C 0.542 3.458 14 O -0.547 6.547 15 N -0.583 5.583 16 C 0.079 3.921 17 C 0.257 3.743 18 H 0.064 0.936 19 C -0.146 4.146 20 C -0.528 4.528 21 H 0.060 0.940 22 C 0.065 3.935 23 N -0.887 5.887 24 Si 0.900 3.100 25 H -0.277 1.277 26 H -0.286 1.286 27 H -0.276 1.276 28 C -0.073 4.073 29 C -0.106 4.106 30 H 0.060 0.940 31 H 0.073 0.927 32 H 0.061 0.939 33 H 0.088 0.912 34 H 0.055 0.945 35 H 0.061 0.939 36 H 0.064 0.936 37 H 0.395 0.605 38 H 0.398 0.602 39 H 0.075 0.925 40 H 0.075 0.925 41 H 0.127 0.873 42 H 0.137 0.863 43 H 0.044 0.956 44 H 0.059 0.941 45 H 0.083 0.917 46 H 0.094 0.906 47 H 0.011 0.989 48 H 0.030 0.970 49 H 0.264 0.736 50 H 0.132 0.868 51 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.713 12.241 -20.442 27.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.049 3.951 3 C -0.223 4.223 4 N -0.400 5.400 5 C 0.404 3.596 6 O -0.470 6.470 7 N -0.397 5.397 8 C 0.059 3.941 9 C -0.105 4.105 10 C -0.126 4.126 11 C -0.115 4.115 12 C -0.104 4.104 13 C 0.328 3.672 14 O -0.426 6.426 15 N -0.313 5.313 16 C -0.065 4.065 17 C 0.157 3.843 18 H 0.082 0.918 19 C -0.204 4.204 20 C -0.567 4.567 21 H 0.078 0.922 22 C -0.137 4.137 23 N -0.525 5.525 24 Si 0.727 3.273 25 H -0.202 1.202 26 H -0.211 1.211 27 H -0.202 1.202 28 C -0.092 4.092 29 C -0.125 4.125 30 H 0.079 0.921 31 H 0.092 0.908 32 H 0.081 0.919 33 H 0.106 0.894 34 H 0.074 0.926 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.229 0.771 38 H 0.232 0.768 39 H 0.093 0.907 40 H 0.094 0.906 41 H 0.145 0.855 42 H 0.154 0.846 43 H 0.063 0.937 44 H 0.077 0.923 45 H 0.101 0.899 46 H 0.112 0.888 47 H 0.030 0.970 48 H 0.049 0.951 49 H 0.074 0.926 50 H 0.150 0.850 51 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -13.132 12.498 -20.632 27.465 hybrid contribution 0.526 -0.445 0.819 1.070 sum -12.606 12.053 -19.814 26.396 Atomic orbital electron populations 1.22087 0.94166 1.02672 1.02943 1.20786 0.93544 0.92679 0.88060 1.22213 1.02311 0.95895 1.01910 1.45272 1.17220 1.60087 1.17411 1.15959 0.81785 0.78351 0.83528 1.90929 1.57212 1.65598 1.33285 1.45223 1.19406 1.59865 1.15216 1.20027 0.83355 0.96906 0.93834 1.19918 1.00754 0.94611 0.95198 1.20981 1.00004 0.94372 0.97216 1.21643 0.97374 1.00314 0.92175 1.20327 1.00373 0.94951 0.94798 1.18299 0.78537 0.82281 0.88060 1.90744 1.53083 1.62998 1.35769 1.48196 1.61323 1.11919 1.09832 1.21880 1.00950 0.96747 0.86913 1.18998 0.93956 0.92104 0.79203 0.91812 1.22083 0.95645 0.99071 1.03629 1.21273 0.94258 1.41107 1.00066 0.92229 1.24892 0.98200 0.95400 0.95233 1.69874 1.35788 1.43236 1.03576 0.86535 0.84720 0.78770 0.77240 1.20232 1.21139 1.20202 1.21235 0.97464 0.93482 0.96972 1.20996 0.99117 0.99811 0.92526 0.92064 0.90845 0.91946 0.89424 0.92602 0.91970 0.91708 0.77099 0.76790 0.90677 0.90647 0.85550 0.84556 0.93734 0.92269 0.89873 0.88752 0.96958 0.95106 0.92573 0.84977 0.85531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.64 9.38 37.16 0.35 -0.29 16 2 C 0.15 1.00 3.18 -67.94 -0.22 0.79 16 3 C -0.16 -1.05 9.48 37.15 0.35 -0.70 16 4 N -0.74 -5.17 5.08 -58.68 -0.30 -5.47 16 5 C 0.70 7.10 8.53 -86.92 -0.74 6.36 16 6 O -0.59 -8.38 16.01 5.29 0.08 -8.29 16 7 N -0.74 -6.14 5.55 -66.41 -0.37 -6.50 16 8 C 0.18 1.65 5.79 -5.19 -0.03 1.62 16 9 C -0.10 -1.02 5.25 -104.53 -0.55 -1.57 16 10 C -0.11 -1.09 9.68 -39.64 -0.38 -1.47 16 11 C -0.10 -1.22 7.62 -39.19 -0.30 -1.52 16 12 C -0.10 -1.60 5.16 -104.97 -0.54 -2.14 16 13 C 0.54 11.30 7.33 -12.33 -0.09 11.21 16 14 O -0.55 -13.56 16.28 5.32 0.09 -13.47 16 15 N -0.58 -12.31 2.75 -176.38 -0.49 -12.80 16 16 C 0.08 1.30 7.87 59.85 0.47 1.77 16 17 C 0.26 6.51 2.63 -69.08 -0.18 6.32 16 18 H 0.06 1.87 6.91 -51.93 -0.36 1.52 16 19 C -0.15 -3.44 8.97 37.16 0.33 -3.11 16 20 C -0.53 -14.09 7.96 -34.44 -0.27 -14.36 16 21 H 0.06 1.56 7.42 -52.48 -0.39 1.17 16 22 C 0.07 1.76 5.30 -17.82 -0.09 1.67 16 23 N -0.89 -24.80 11.32 55.43 0.63 -24.18 16 24 Si 0.90 20.82 29.54 -169.99 -5.02 15.80 16 25 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 26 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 27 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 28 C -0.07 -1.02 9.65 -39.18 -0.38 -1.39 16 29 C -0.11 -1.15 9.68 -39.64 -0.38 -1.53 16 30 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.09 0.74 7.58 -51.93 -0.39 0.34 16 34 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.40 1.76 8.62 -40.82 -0.35 1.41 16 38 H 0.40 2.58 8.48 -40.82 -0.35 2.23 16 39 H 0.07 0.72 8.08 -51.93 -0.42 0.30 16 40 H 0.08 0.71 8.08 -51.93 -0.42 0.29 16 41 H 0.13 1.02 8.06 -52.48 -0.42 0.59 16 42 H 0.14 1.61 5.52 -52.49 -0.29 1.32 16 43 H 0.04 0.62 6.86 -51.93 -0.36 0.27 16 44 H 0.06 0.85 5.99 -51.93 -0.31 0.54 16 45 H 0.08 1.46 7.10 -51.93 -0.37 1.09 16 46 H 0.09 2.45 6.07 -51.93 -0.32 2.13 16 47 H 0.01 0.26 8.14 -51.93 -0.42 -0.17 16 48 H 0.03 0.66 7.67 -51.93 -0.40 0.27 16 49 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 50 H 0.13 1.90 8.06 -52.49 -0.42 1.48 16 51 H 0.13 1.13 8.06 -52.48 -0.42 0.71 16 LS Contribution 415.16 15.07 6.26 6.26 Total: -1.00 -33.64 415.16 -9.86 -43.50 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -8.08 Total: 3.49 kcal Atomic # 6 Polarization: 4.32 SS G_CDS: -2.66 Total: 1.66 kcal Atomic # 7 Polarization: -48.42 SS G_CDS: -0.52 Total: -48.95 kcal Atomic # 8 Polarization: -21.93 SS G_CDS: 0.17 Total: -21.76 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -33.64 -9.86 -43.50 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349322461.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.423 kcal (2) G-P(sol) polarization free energy of solvation -33.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds