Wall clock time and date at job start Wed Apr 1 2020 04:51:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.46976 * 2 1 4 4 N 1.46496 * 109.46974 * 120.00317 * 2 1 3 5 5 C 1.34786 * 119.99805 * 154.99991 * 4 2 1 6 6 O 1.21587 * 120.00025 * 0.02562 * 5 4 2 7 7 N 1.34770 * 119.99889 * 179.97438 * 5 4 2 8 8 C 1.46499 * 119.99963 * 180.02562 * 7 5 4 9 9 C 1.50707 * 109.47211 * 180.02562 * 8 7 5 10 10 C 1.38356 * 119.85634 * 89.99719 * 9 8 7 11 11 C 1.37956 * 120.14521 * 179.97438 * 10 9 8 12 12 C 1.39573 * 119.85232 * 0.02619 * 11 10 9 13 13 C 1.47850 * 120.14390 * 179.97438 * 12 11 10 14 14 O 1.21550 * 120.00261 * 221.41882 * 13 12 11 15 15 N 1.34774 * 119.99591 * 41.42781 * 13 12 11 16 16 C 1.46497 * 120.00288 * 355.46915 * 15 13 12 17 17 C 1.46501 * 119.99983 * 175.47234 * 15 13 12 18 18 H 1.09000 * 109.47070 * 359.97438 * 17 15 13 19 19 C 1.53000 * 109.47238 * 119.99547 * 17 15 13 20 20 C 1.50700 * 109.47427 * 239.99753 * 17 15 13 21 21 H 1.08005 * 119.99850 * 359.97438 * 20 17 15 22 22 C 1.37874 * 120.00297 * 179.97438 * 20 17 15 23 23 N 1.31521 * 119.99774 * 0.02562 * 22 20 17 24 24 Si 1.86796 * 119.99955 * 179.97438 * 22 20 17 25 25 H 1.48502 * 109.46936 * 60.00480 * 24 22 20 26 26 H 1.48505 * 109.47141 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.47381 * 300.00245 * 24 22 20 28 28 C 1.39574 * 119.71401 * 0.24929 * 12 11 10 29 29 C 1.37962 * 119.84836 * 359.47185 * 28 12 11 30 30 H 1.08998 * 109.47070 * 299.99720 * 1 2 3 31 31 H 1.08999 * 109.47232 * 59.99998 * 1 2 3 32 32 H 1.09000 * 109.47042 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47070 * 240.00279 * 2 1 3 34 34 H 1.08998 * 109.46993 * 60.00232 * 3 2 1 35 35 H 1.08999 * 109.47355 * 179.97438 * 3 2 1 36 36 H 1.09003 * 109.47621 * 300.00087 * 3 2 1 37 37 H 0.96995 * 120.00422 * 334.99985 * 4 2 1 38 38 H 0.97005 * 120.00221 * 0.02562 * 7 5 4 39 39 H 1.09000 * 109.47230 * 60.00052 * 8 7 5 40 40 H 1.09001 * 109.47217 * 299.99774 * 8 7 5 41 41 H 1.08003 * 119.92545 * 0.02562 * 10 9 8 42 42 H 1.07997 * 120.07398 * 179.97438 * 11 10 9 43 43 H 1.09003 * 109.47397 * 275.16978 * 16 15 13 44 44 H 1.09000 * 109.47155 * 35.17146 * 16 15 13 45 45 H 1.08998 * 109.47576 * 155.17677 * 16 15 13 46 46 H 1.08998 * 109.46970 * 180.02562 * 19 17 15 47 47 H 1.09004 * 109.46983 * 300.00064 * 19 17 15 48 48 H 1.09000 * 109.46893 * 60.00133 * 19 17 15 49 49 H 0.97002 * 119.99711 * 180.02562 * 23 22 20 50 50 H 1.08002 * 120.07854 * 179.72536 * 28 12 11 51 51 H 1.08005 * 119.92467 * 180.27383 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 3.2403 -1.2593 1.1943 6 8 3.9376 -1.1985 0.2001 7 7 3.6898 -1.8942 2.2948 8 6 5.0182 -2.5117 2.2930 9 6 5.2768 -3.1512 3.6330 10 6 4.9172 -4.4699 3.8477 11 6 5.1516 -5.0614 5.0718 12 6 5.7524 -4.3263 6.0949 13 6 6.0061 -4.9536 7.4095 14 8 5.7970 -4.3293 8.4313 15 7 6.4693 -6.2175 7.4748 16 6 6.6272 -7.0040 6.2490 17 6 6.8147 -6.8050 8.7716 18 1 6.6329 -6.0756 9.5609 19 6 5.9534 -8.0459 9.0151 20 6 8.2703 -7.1954 8.7746 21 1 8.8773 -7.0234 7.8980 22 6 8.8271 -7.7720 9.8964 23 7 8.0878 -7.9818 10.9637 24 14 10.6312 -8.2564 9.8998 25 1 11.4674 -7.0524 9.6626 26 1 10.9817 -8.8507 11.2148 27 1 10.8788 -9.2506 8.8249 28 6 6.1074 -2.9947 5.8736 29 6 5.8727 -2.4170 4.6429 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.6766 1.9562 0.8900 35 1 3.1299 1.4425 0.0005 36 1 1.6766 1.9564 -0.8900 37 1 1.4622 -0.7388 1.9894 38 1 3.1336 -1.9423 3.0881 39 1 5.7732 -1.7490 2.1023 40 1 5.0645 -3.2718 1.5131 41 1 4.4528 -5.0376 3.0550 42 1 4.8701 -6.0906 5.2383 43 1 5.6773 -7.4736 5.9935 44 1 6.9395 -6.3497 5.4351 45 1 7.3824 -7.7742 6.4062 46 1 6.2101 -8.4827 9.9801 47 1 4.9006 -7.7635 9.0130 48 1 6.1356 -8.7752 8.2257 49 1 8.4797 -8.3871 11.7531 50 1 6.5685 -2.4191 6.6626 51 1 6.1510 -1.3880 4.4689 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000349322461.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:53 Heat of formation + Delta-G solvation = -62.627676 kcal Electronic energy + Delta-G solvation = -29669.152781 eV Core-core repulsion = 25567.590261 eV Total energy + Delta-G solvation = -4101.562520 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.45604 -41.01550 -39.57115 -37.23741 -37.14880 -35.85398 -34.86507 -33.16406 -32.17296 -31.76893 -30.81956 -28.05637 -27.89269 -27.36904 -27.20932 -24.12656 -23.59539 -22.68745 -22.14877 -21.62675 -20.44044 -19.57525 -18.60376 -18.07286 -17.63924 -17.39906 -16.81594 -16.65617 -16.31018 -16.17564 -15.78759 -15.53094 -15.38266 -15.19702 -14.91076 -14.54487 -14.52959 -14.23411 -13.98360 -13.91549 -13.65652 -13.50804 -13.44422 -13.09837 -13.02226 -12.99517 -12.83946 -12.77845 -12.70931 -12.48227 -12.26184 -12.21331 -12.13394 -11.94745 -11.86331 -11.36929 -11.23484 -10.79124 -10.52359 -10.35545 -9.95376 -9.85414 -9.75985 -9.37813 -8.16243 -6.33112 -0.15402 0.39860 1.41195 1.43501 1.50886 1.65923 1.92348 2.19335 2.27291 2.45808 2.79580 3.11789 3.42094 3.51771 3.72534 3.83201 3.98750 3.99832 4.20129 4.31985 4.37063 4.37641 4.42670 4.60544 4.66718 4.72311 4.73263 4.77833 4.79681 4.84451 4.90225 4.97174 4.99557 5.03818 5.06174 5.07930 5.24569 5.29294 5.36095 5.39727 5.45761 5.46224 5.51219 5.58883 5.64556 5.65429 5.88262 6.01143 6.03998 6.13696 6.73517 6.74547 7.11886 7.24546 7.41762 7.61975 8.88090 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.028120 B = 0.001709 C = 0.001688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.494615 B =16383.757428 C =16587.745249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.151 3.849 3 C -0.160 4.160 4 N -0.732 5.732 5 C 0.700 3.300 6 O -0.636 6.636 7 N -0.732 5.732 8 C 0.187 3.813 9 C -0.083 4.083 10 C -0.092 4.092 11 C -0.092 4.092 12 C -0.126 4.126 13 C 0.533 3.467 14 O -0.603 6.603 15 N -0.590 5.590 16 C 0.077 3.923 17 C 0.260 3.740 18 H 0.008 0.992 19 C -0.131 4.131 20 C -0.541 4.541 21 H 0.061 0.939 22 C 0.016 3.984 23 N -0.916 5.916 24 Si 0.966 3.034 25 H -0.278 1.278 26 H -0.283 1.283 27 H -0.262 1.262 28 C -0.086 4.086 29 C -0.096 4.096 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.062 0.938 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.033 0.967 36 H 0.077 0.923 37 H 0.410 0.590 38 H 0.409 0.591 39 H 0.073 0.927 40 H 0.080 0.920 41 H 0.159 0.841 42 H 0.147 0.853 43 H 0.076 0.924 44 H 0.083 0.917 45 H 0.071 0.929 46 H 0.068 0.932 47 H 0.020 0.980 48 H 0.049 0.951 49 H 0.265 0.735 50 H 0.115 0.885 51 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.633 12.162 -23.444 30.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.046 3.954 3 C -0.219 4.219 4 N -0.388 5.388 5 C 0.400 3.600 6 O -0.517 6.517 7 N -0.388 5.388 8 C 0.063 3.937 9 C -0.084 4.084 10 C -0.110 4.110 11 C -0.110 4.110 12 C -0.129 4.129 13 C 0.323 3.677 14 O -0.487 6.487 15 N -0.319 5.319 16 C -0.065 4.065 17 C 0.158 3.842 18 H 0.026 0.974 19 C -0.189 4.189 20 C -0.579 4.579 21 H 0.079 0.921 22 C -0.184 4.184 23 N -0.555 5.555 24 Si 0.791 3.209 25 H -0.204 1.204 26 H -0.208 1.208 27 H -0.186 1.186 28 C -0.105 4.105 29 C -0.114 4.114 30 H 0.092 0.908 31 H 0.102 0.898 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.052 0.948 36 H 0.096 0.904 37 H 0.246 0.754 38 H 0.245 0.755 39 H 0.091 0.909 40 H 0.098 0.902 41 H 0.177 0.823 42 H 0.164 0.836 43 H 0.094 0.906 44 H 0.102 0.898 45 H 0.090 0.910 46 H 0.087 0.913 47 H 0.039 0.961 48 H 0.068 0.932 49 H 0.074 0.926 50 H 0.133 0.867 51 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -14.092 12.404 -23.648 30.194 hybrid contribution 0.746 -0.325 1.679 1.866 sum -13.346 12.079 -21.969 28.402 Atomic orbital electron populations 1.22027 0.91798 1.03100 1.04069 1.20863 0.95281 0.92250 0.87024 1.22170 1.00423 0.96164 1.03110 1.45209 1.16342 1.59093 1.18173 1.16139 0.82258 0.78437 0.83202 1.90904 1.58604 1.67250 1.34969 1.45052 1.19218 1.59312 1.15204 1.19954 0.83700 0.96974 0.93062 1.20012 0.98951 0.94444 0.94969 1.21263 0.98642 0.94395 0.96742 1.21699 0.96702 1.00587 0.92001 1.19970 1.03948 0.95902 0.93102 1.19137 0.77234 0.81784 0.89563 1.90694 1.55469 1.64163 1.38343 1.48174 1.61162 1.12687 1.09857 1.22126 1.02411 0.96488 0.85473 1.18603 0.94067 0.91275 0.80221 0.97358 1.21862 0.95720 0.98542 1.02811 1.21524 0.95056 1.41061 1.00280 0.92099 1.25736 1.02465 0.95365 0.94818 1.70019 1.37558 1.43796 1.04094 0.85498 0.79330 0.78486 0.77633 1.20383 1.20847 1.18607 1.21195 0.98384 0.92931 0.98030 1.21136 0.98289 1.00767 0.91212 0.90841 0.89819 0.91853 0.91650 0.91581 0.94755 0.90369 0.75409 0.75471 0.90907 0.90217 0.82303 0.83581 0.90593 0.89850 0.91016 0.91314 0.96094 0.93206 0.92566 0.86708 0.83410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 9.38 71.98 0.68 -0.15 16 2 C 0.15 1.73 3.18 44.99 0.14 1.87 16 3 C -0.16 -1.84 9.48 71.98 0.68 -1.16 16 4 N -0.73 -8.69 5.08 -457.82 -2.33 -11.02 16 5 C 0.70 12.83 8.53 179.05 1.53 14.35 16 6 O -0.64 -17.40 16.01 -3.99 -0.06 -17.47 16 7 N -0.73 -10.02 5.55 -482.29 -2.68 -12.70 16 8 C 0.19 2.79 5.79 85.64 0.50 3.28 16 9 C -0.08 -1.34 5.25 -19.81 -0.10 -1.45 16 10 C -0.09 -1.49 9.68 22.23 0.22 -1.28 16 11 C -0.09 -2.06 7.62 22.53 0.17 -1.89 16 12 C -0.13 -3.94 5.16 -20.09 -0.10 -4.04 16 13 C 0.53 23.08 7.33 86.79 0.64 23.72 16 14 O -0.60 -32.03 16.28 -3.87 -0.06 -32.09 16 15 N -0.59 -25.40 2.75 -830.22 -2.29 -27.68 16 16 C 0.08 2.42 7.87 127.77 1.01 3.42 16 17 C 0.26 13.70 2.63 44.25 0.12 13.81 16 18 H 0.01 0.53 6.91 -2.39 -0.02 0.52 16 19 C -0.13 -6.31 8.97 71.98 0.65 -5.66 16 20 C -0.54 -29.49 7.96 25.60 0.20 -29.29 16 21 H 0.06 3.22 7.42 -2.91 -0.02 3.20 16 22 C 0.02 0.88 5.30 84.65 0.45 1.33 16 23 N -0.92 -52.81 11.32 21.45 0.24 -52.56 16 24 Si 0.97 42.99 29.54 68.60 2.03 45.02 16 25 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 26 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 27 H -0.26 -10.95 7.11 99.48 0.71 -10.25 16 28 C -0.09 -2.39 9.65 22.53 0.22 -2.18 16 29 C -0.10 -1.86 9.68 22.23 0.22 -1.65 16 30 H 0.07 0.25 8.14 -2.39 -0.02 0.23 16 31 H 0.08 0.31 8.14 -2.39 -0.02 0.29 16 32 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 33 H 0.07 1.06 7.58 -2.39 -0.02 1.05 16 34 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 35 H 0.03 0.59 8.14 -2.39 -0.02 0.57 16 36 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 37 H 0.41 2.52 8.62 -92.71 -0.80 1.72 16 38 H 0.41 3.91 8.48 -92.70 -0.79 3.12 16 39 H 0.07 1.19 8.08 -2.39 -0.02 1.17 16 40 H 0.08 1.21 8.08 -2.39 -0.02 1.19 16 41 H 0.16 1.66 8.06 -2.91 -0.02 1.64 16 42 H 0.15 2.97 5.52 -2.91 -0.02 2.95 16 43 H 0.08 1.91 6.86 -2.39 -0.02 1.89 16 44 H 0.08 2.21 5.99 -2.39 -0.01 2.20 16 45 H 0.07 2.43 7.10 -2.39 -0.02 2.41 16 46 H 0.07 3.68 6.07 -2.39 -0.01 3.67 16 47 H 0.02 0.92 8.14 -2.38 -0.02 0.90 16 48 H 0.05 2.15 7.67 -2.39 -0.02 2.13 16 49 H 0.27 14.50 8.31 -92.71 -0.77 13.73 16 50 H 0.11 3.50 8.06 -2.91 -0.02 3.48 16 51 H 0.15 2.25 8.06 -2.91 -0.02 2.22 16 Total: -1.00 -78.57 415.16 1.41 -77.16 By element: Atomic # 1 Polarization: 18.91 SS G_CDS: -0.63 Total: 18.27 kcal Atomic # 6 Polarization: 5.87 SS G_CDS: 7.19 Total: 13.06 kcal Atomic # 7 Polarization: -96.91 SS G_CDS: -7.05 Total: -103.96 kcal Atomic # 8 Polarization: -49.43 SS G_CDS: -0.13 Total: -49.56 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Total: -78.57 1.41 -77.16 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349322461.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.532 kcal (2) G-P(sol) polarization free energy of solvation -78.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds