Wall clock time and date at job start Wed Apr 1 2020 04:53:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47373 * 2 1 4 4 C 1.53000 * 109.47184 * 120.00614 * 2 1 3 5 5 H 1.08997 * 109.46852 * 302.15337 * 4 2 1 6 6 N 1.46501 * 109.47366 * 182.15523 * 4 2 1 7 7 C 1.34777 * 120.00144 * 84.99382 * 6 4 2 8 8 O 1.21596 * 119.99779 * 0.02562 * 7 6 4 9 9 N 1.34771 * 120.00168 * 180.02562 * 7 6 4 10 10 C 1.46499 * 119.99929 * 180.02562 * 9 7 6 11 11 C 1.50707 * 109.47012 * 180.02562 * 10 9 7 12 12 C 1.38233 * 119.99785 * 269.72415 * 11 10 9 13 13 C 1.38235 * 120.00097 * 179.76803 * 12 11 10 14 14 C 1.38234 * 119.99657 * 0.50474 * 13 12 11 15 15 C 1.38241 * 120.00346 * 359.74963 * 14 13 12 16 16 C 1.38231 * 119.99518 * 0.02562 * 15 14 13 17 17 C 1.50701 * 109.47445 * 62.15428 * 4 2 1 18 18 O 1.21280 * 120.00020 * 91.89872 * 17 4 2 19 19 N 1.34779 * 119.99935 * 271.90758 * 17 4 2 20 20 C 1.46495 * 120.00078 * 175.09825 * 19 17 4 21 21 H 1.09006 * 109.47173 * 34.99878 * 20 19 17 22 22 C 1.53005 * 109.47179 * 274.99953 * 20 19 17 23 23 C 1.50701 * 109.47102 * 154.99603 * 20 19 17 24 24 H 1.07992 * 120.00106 * 0.02562 * 23 20 19 25 25 C 1.37874 * 119.99631 * 179.97438 * 23 20 19 26 26 N 1.31509 * 120.00473 * 0.02562 * 25 23 20 27 27 Si 1.86806 * 119.99624 * 180.02562 * 25 23 20 28 28 H 1.48499 * 109.47075 * 60.00371 * 27 25 23 29 29 H 1.48505 * 109.46895 * 180.02562 * 27 25 23 30 30 H 1.48494 * 109.47014 * 300.00068 * 27 25 23 31 31 H 1.09000 * 109.47070 * 293.82264 * 1 2 3 32 32 H 1.09000 * 109.47266 * 53.81784 * 1 2 3 33 33 H 1.08996 * 109.47518 * 173.82563 * 1 2 3 34 34 H 1.09002 * 109.46871 * 239.99908 * 2 1 3 35 35 H 1.09007 * 109.47181 * 180.02562 * 3 2 1 36 36 H 1.08993 * 109.47676 * 300.00110 * 3 2 1 37 37 H 1.09001 * 109.46993 * 60.00621 * 3 2 1 38 38 H 0.96995 * 119.99770 * 265.00305 * 6 4 2 39 39 H 0.97001 * 119.99939 * 0.02562 * 9 7 6 40 40 H 1.09004 * 109.47239 * 299.99872 * 10 9 7 41 41 H 1.08994 * 109.47760 * 59.99963 * 10 9 7 42 42 H 1.08000 * 120.00339 * 359.97438 * 12 11 10 43 43 H 1.07998 * 120.00193 * 180.23567 * 13 12 11 44 44 H 1.08000 * 120.00031 * 179.72572 * 14 13 12 45 45 H 1.07999 * 119.99896 * 179.97438 * 15 14 13 46 46 H 1.08003 * 119.99783 * 179.97438 * 16 15 14 47 47 H 0.97000 * 119.99998 * 355.09429 * 19 17 4 48 48 H 1.08997 * 109.46794 * 299.99867 * 22 20 19 49 49 H 1.08997 * 109.47041 * 180.02562 * 22 20 19 50 50 H 1.09004 * 109.46908 * 59.99616 * 22 20 19 51 51 H 0.97002 * 120.00199 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 1 1.6455 -0.2304 2.1387 6 7 3.5041 -0.6766 1.2755 7 6 4.1363 0.3949 1.7937 8 8 3.4915 1.3243 2.2398 9 7 5.4832 0.4364 1.8174 10 6 6.1704 1.6009 2.3812 11 6 7.6609 1.3988 2.2872 12 6 8.3427 0.7908 3.3246 13 6 9.7091 0.6011 3.2363 14 6 10.3952 1.0289 2.1151 15 6 9.7142 1.6417 1.0798 16 6 8.3471 1.8272 1.1662 17 6 1.5818 -2.1568 1.2227 18 8 2.2885 -3.0100 0.7292 19 7 0.3865 -2.4924 1.7472 20 6 -0.1067 -3.8666 1.6263 21 1 0.7320 -4.5602 1.6871 22 6 -0.8139 -4.0381 0.2804 23 6 -1.0768 -4.1522 2.7437 24 1 -1.3036 -3.3866 3.4707 25 6 -1.6755 -5.3907 2.8369 26 7 -1.3997 -6.3228 1.9512 27 14 -2.8785 -5.7445 4.2215 28 1 -4.0208 -4.7992 4.1384 29 1 -3.3783 -7.1376 4.0990 30 1 -2.1924 -5.5784 5.5279 31 1 -0.3633 0.4151 0.9401 32 1 -0.3634 0.6067 -0.8295 33 1 -0.3634 -1.0216 -0.1105 34 1 1.8933 -0.5139 -0.8900 35 1 3.1301 1.4424 -0.0005 36 1 1.6768 1.9563 -0.8899 37 1 1.6768 1.9562 0.8901 38 1 4.0184 -1.4181 0.9198 39 1 5.9976 -0.3048 1.4612 40 1 5.8892 2.4941 1.8232 41 1 5.8849 1.7206 3.4263 42 1 7.8074 0.4610 4.2027 43 1 10.2413 0.1227 4.0451 44 1 11.4635 0.8847 2.0480 45 1 10.2503 1.9762 0.2041 46 1 7.8150 2.3063 0.3576 47 1 -0.1473 -1.8241 2.2048 48 1 -1.6525 -3.3445 0.2197 49 1 -1.1812 -5.0604 0.1907 50 1 -0.1122 -3.8314 -0.5277 51 1 -1.8206 -7.1943 2.0171 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356414491.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:11 Heat of formation + Delta-G solvation = -53.608788 kcal Electronic energy + Delta-G solvation = -30475.976734 eV Core-core repulsion = 26374.805302 eV Total energy + Delta-G solvation = -4101.171432 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.54993 -39.65639 -38.82167 -36.11372 -34.91392 -34.79068 -33.30878 -32.34701 -31.40660 -31.27472 -29.28502 -27.20686 -26.87953 -25.51351 -25.25374 -22.94868 -21.77036 -21.54583 -21.01319 -19.97207 -19.60702 -18.75395 -17.46489 -16.81722 -16.44751 -16.02992 -15.75023 -15.40584 -15.29972 -15.21432 -14.83902 -14.40375 -14.31526 -14.09130 -13.79839 -13.44451 -13.27823 -13.13060 -12.88022 -12.70783 -12.50704 -12.46470 -12.13290 -11.93592 -11.81666 -11.44508 -11.40493 -11.33717 -11.13113 -10.98841 -10.86491 -10.73210 -10.68150 -10.36388 -10.24941 -10.14754 -9.33242 -9.29652 -9.21484 -9.13626 -9.08368 -8.71764 -8.56850 -7.96591 -6.14122 -4.23405 0.85606 1.02527 2.63193 3.17358 3.25293 3.30472 3.30678 3.32024 3.45407 3.99934 4.31626 4.32734 4.38378 4.49400 4.63814 4.75940 4.99483 5.03169 5.07035 5.11379 5.18155 5.24145 5.36335 5.39421 5.51609 5.55862 5.63589 5.67838 5.81060 5.86675 6.04965 6.05696 6.10191 6.13563 6.21173 6.22761 6.32457 6.42342 6.53317 6.59303 6.60222 6.78210 6.89723 6.92679 7.10389 7.38526 7.51158 7.66417 7.87522 8.02670 8.11750 8.56780 8.63809 8.73601 9.01518 9.43862 10.91718 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014700 B = 0.002122 C = 0.001978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.357962 B =13192.265522 C =14154.304409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.097 4.097 3 C -0.131 4.131 4 C 0.150 3.850 5 H 0.103 0.897 6 N -0.726 5.726 7 C 0.708 3.292 8 O -0.588 6.588 9 N -0.745 5.745 10 C 0.182 3.818 11 C -0.108 4.108 12 C -0.099 4.099 13 C -0.123 4.123 14 C -0.114 4.114 15 C -0.124 4.124 16 C -0.100 4.100 17 C 0.502 3.498 18 O -0.554 6.554 19 N -0.699 5.699 20 C 0.264 3.736 21 H 0.050 0.950 22 C -0.147 4.147 23 C -0.534 4.534 24 H 0.061 0.939 25 C 0.066 3.934 26 N -0.884 5.884 27 Si 0.902 3.098 28 H -0.276 1.276 29 H -0.286 1.286 30 H -0.276 1.276 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.068 0.932 34 H 0.073 0.927 35 H 0.050 0.950 36 H 0.045 0.955 37 H 0.066 0.934 38 H 0.405 0.595 39 H 0.397 0.603 40 H 0.074 0.926 41 H 0.074 0.926 42 H 0.125 0.875 43 H 0.124 0.876 44 H 0.122 0.878 45 H 0.123 0.877 46 H 0.124 0.876 47 H 0.391 0.609 48 H 0.028 0.972 49 H 0.091 0.909 50 H 0.013 0.987 51 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.370 16.709 -2.096 24.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.117 4.117 3 C -0.189 4.189 4 C 0.040 3.960 5 H 0.121 0.879 6 N -0.381 5.381 7 C 0.408 3.592 8 O -0.466 6.466 9 N -0.401 5.401 10 C 0.059 3.941 11 C -0.108 4.108 12 C -0.117 4.117 13 C -0.141 4.141 14 C -0.132 4.132 15 C -0.142 4.142 16 C -0.118 4.118 17 C 0.286 3.714 18 O -0.433 6.433 19 N -0.347 5.347 20 C 0.163 3.837 21 H 0.067 0.933 22 C -0.205 4.205 23 C -0.572 4.572 24 H 0.079 0.921 25 C -0.137 4.137 26 N -0.521 5.521 27 Si 0.729 3.271 28 H -0.201 1.201 29 H -0.212 1.212 30 H -0.202 1.202 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.087 0.913 34 H 0.092 0.908 35 H 0.069 0.931 36 H 0.064 0.936 37 H 0.085 0.915 38 H 0.241 0.759 39 H 0.231 0.769 40 H 0.092 0.908 41 H 0.093 0.907 42 H 0.143 0.857 43 H 0.142 0.858 44 H 0.140 0.860 45 H 0.141 0.859 46 H 0.142 0.858 47 H 0.224 0.776 48 H 0.047 0.953 49 H 0.109 0.891 50 H 0.032 0.968 51 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 18.174 16.725 -2.075 24.786 hybrid contribution -0.352 -0.696 0.589 0.977 sum 17.822 16.029 -1.486 24.016 Atomic orbital electron populations 1.21936 0.94009 1.03112 1.02171 1.21390 0.96498 0.96810 0.96988 1.21824 1.00848 0.94747 1.01461 1.20845 0.79930 0.94591 1.00596 0.87929 1.44832 1.06469 1.21032 1.65816 1.15771 0.81585 0.82975 0.78847 1.90926 1.65124 1.37216 1.53368 1.45125 1.04752 1.22755 1.67507 1.19981 0.86237 0.88234 0.99689 1.19935 0.95150 1.00549 0.95185 1.21167 0.94455 0.97655 0.98470 1.21196 0.94414 1.00152 0.98309 1.21236 1.00037 0.98036 0.93905 1.21183 0.94424 0.99569 0.98980 1.21137 0.94398 0.99030 0.97251 1.20325 0.82650 0.89262 0.79172 1.90639 1.54763 1.51021 1.46927 1.46554 1.18407 1.14851 1.54880 1.18778 0.94376 0.76740 0.93855 0.93257 1.22090 0.98191 1.03785 0.96451 1.21168 1.25958 0.98821 1.11301 0.92064 1.24880 0.96648 0.95855 0.96294 1.69886 1.43015 1.04497 1.34704 0.86501 0.81059 0.77383 0.82119 1.20112 1.21155 1.20184 0.92209 0.92270 0.91326 0.90834 0.93067 0.93636 0.91531 0.75914 0.76877 0.90776 0.90740 0.85693 0.85850 0.86020 0.85898 0.85778 0.77606 0.95302 0.89077 0.96758 0.92514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 8.58 37.16 0.32 -1.73 16 2 C -0.10 -1.34 2.67 -90.62 -0.24 -1.58 16 3 C -0.13 -1.72 7.69 37.16 0.29 -1.43 16 4 C 0.15 2.31 2.23 -69.08 -0.15 2.16 16 5 H 0.10 1.61 7.58 -51.93 -0.39 1.21 16 6 N -0.73 -10.21 4.92 -59.81 -0.29 -10.51 16 7 C 0.71 9.68 6.84 -86.92 -0.59 9.09 16 8 O -0.59 -9.58 13.47 5.28 0.07 -9.51 16 9 N -0.75 -7.75 5.55 -66.41 -0.37 -8.11 16 10 C 0.18 1.69 5.80 -5.19 -0.03 1.66 16 11 C -0.11 -0.87 5.25 -104.62 -0.55 -1.42 16 12 C -0.10 -0.77 9.70 -39.58 -0.38 -1.15 16 13 C -0.12 -0.86 10.05 -39.58 -0.40 -1.26 16 14 C -0.11 -0.75 10.05 -39.58 -0.40 -1.15 16 15 C -0.12 -0.83 10.05 -39.58 -0.40 -1.23 16 16 C -0.10 -0.74 9.70 -39.58 -0.38 -1.12 16 17 C 0.50 9.64 6.27 -10.98 -0.07 9.57 16 18 O -0.55 -12.41 15.70 5.56 0.09 -12.32 16 19 N -0.70 -14.12 4.06 -54.93 -0.22 -14.34 16 20 C 0.26 6.54 2.60 -69.08 -0.18 6.36 16 21 H 0.05 1.42 7.51 -51.93 -0.39 1.03 16 22 C -0.15 -3.53 9.26 37.16 0.34 -3.18 16 23 C -0.53 -13.94 8.73 -34.44 -0.30 -14.25 16 24 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 25 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 26 N -0.88 -24.57 11.32 55.43 0.63 -23.94 16 27 Si 0.90 20.54 29.54 -169.99 -5.02 15.52 16 28 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 29 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 30 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.07 1.04 6.91 -51.93 -0.36 0.68 16 34 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.05 0.70 5.84 -51.93 -0.30 0.40 16 36 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.94 7.38 -51.93 -0.38 0.56 16 38 H 0.40 5.54 7.83 -40.82 -0.32 5.22 16 39 H 0.40 3.53 8.48 -40.82 -0.35 3.18 16 40 H 0.07 0.70 8.08 -51.93 -0.42 0.28 16 41 H 0.07 0.73 8.08 -51.93 -0.42 0.31 16 42 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 43 H 0.12 0.65 8.06 -52.49 -0.42 0.23 16 44 H 0.12 0.57 8.06 -52.49 -0.42 0.15 16 45 H 0.12 0.60 8.06 -52.49 -0.42 0.18 16 46 H 0.12 0.79 8.06 -52.48 -0.42 0.37 16 47 H 0.39 7.00 8.45 -40.82 -0.34 6.66 16 48 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 49 H 0.09 2.40 6.07 -51.93 -0.32 2.09 16 50 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 51 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 414.04 15.07 6.24 6.24 Total: -1.00 -31.13 414.04 -10.29 -41.42 By element: Atomic # 1 Polarization: 22.73 SS G_CDS: -8.19 Total: 14.54 kcal Atomic # 6 Polarization: 4.24 SS G_CDS: -3.23 Total: 1.01 kcal Atomic # 7 Polarization: -56.65 SS G_CDS: -0.26 Total: -56.90 kcal Atomic # 8 Polarization: -21.99 SS G_CDS: 0.16 Total: -21.83 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -31.13 -10.29 -41.42 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356414491.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.186 kcal (2) G-P(sol) polarization free energy of solvation -31.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds