Wall clock time and date at job start Wed Apr 1 2020 04:53:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47373 * 2 1 4 4 C 1.53000 * 109.47184 * 120.00614 * 2 1 3 5 5 H 1.08997 * 109.46852 * 302.15337 * 4 2 1 6 6 N 1.46501 * 109.47366 * 182.15523 * 4 2 1 7 7 C 1.34777 * 120.00144 * 84.99382 * 6 4 2 8 8 O 1.21596 * 119.99779 * 0.02562 * 7 6 4 9 9 N 1.34771 * 120.00168 * 180.02562 * 7 6 4 10 10 C 1.46499 * 119.99929 * 180.02562 * 9 7 6 11 11 C 1.50707 * 109.47012 * 180.02562 * 10 9 7 12 12 C 1.38233 * 119.99785 * 269.72415 * 11 10 9 13 13 C 1.38235 * 120.00097 * 179.76803 * 12 11 10 14 14 C 1.38234 * 119.99657 * 0.50474 * 13 12 11 15 15 C 1.38241 * 120.00346 * 359.74963 * 14 13 12 16 16 C 1.38231 * 119.99518 * 0.02562 * 15 14 13 17 17 C 1.50701 * 109.47445 * 62.15428 * 4 2 1 18 18 O 1.21280 * 120.00020 * 91.89872 * 17 4 2 19 19 N 1.34779 * 119.99935 * 271.90758 * 17 4 2 20 20 C 1.46495 * 120.00078 * 175.09825 * 19 17 4 21 21 H 1.09006 * 109.47173 * 34.99878 * 20 19 17 22 22 C 1.53005 * 109.47179 * 274.99953 * 20 19 17 23 23 C 1.50701 * 109.47102 * 154.99603 * 20 19 17 24 24 H 1.07992 * 120.00106 * 0.02562 * 23 20 19 25 25 C 1.37874 * 119.99631 * 179.97438 * 23 20 19 26 26 N 1.31509 * 120.00473 * 0.02562 * 25 23 20 27 27 Si 1.86806 * 119.99624 * 180.02562 * 25 23 20 28 28 H 1.48499 * 109.47075 * 60.00371 * 27 25 23 29 29 H 1.48505 * 109.46895 * 180.02562 * 27 25 23 30 30 H 1.48494 * 109.47014 * 300.00068 * 27 25 23 31 31 H 1.09000 * 109.47070 * 293.82264 * 1 2 3 32 32 H 1.09000 * 109.47266 * 53.81784 * 1 2 3 33 33 H 1.08996 * 109.47518 * 173.82563 * 1 2 3 34 34 H 1.09002 * 109.46871 * 239.99908 * 2 1 3 35 35 H 1.09007 * 109.47181 * 180.02562 * 3 2 1 36 36 H 1.08993 * 109.47676 * 300.00110 * 3 2 1 37 37 H 1.09001 * 109.46993 * 60.00621 * 3 2 1 38 38 H 0.96995 * 119.99770 * 265.00305 * 6 4 2 39 39 H 0.97001 * 119.99939 * 0.02562 * 9 7 6 40 40 H 1.09004 * 109.47239 * 299.99872 * 10 9 7 41 41 H 1.08994 * 109.47760 * 59.99963 * 10 9 7 42 42 H 1.08000 * 120.00339 * 359.97438 * 12 11 10 43 43 H 1.07998 * 120.00193 * 180.23567 * 13 12 11 44 44 H 1.08000 * 120.00031 * 179.72572 * 14 13 12 45 45 H 1.07999 * 119.99896 * 179.97438 * 15 14 13 46 46 H 1.08003 * 119.99783 * 179.97438 * 16 15 14 47 47 H 0.97000 * 119.99998 * 355.09429 * 19 17 4 48 48 H 1.08997 * 109.46794 * 299.99867 * 22 20 19 49 49 H 1.08997 * 109.47041 * 180.02562 * 22 20 19 50 50 H 1.09004 * 109.46908 * 59.99616 * 22 20 19 51 51 H 0.97002 * 120.00199 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 1 1.6455 -0.2304 2.1387 6 7 3.5041 -0.6766 1.2755 7 6 4.1363 0.3949 1.7937 8 8 3.4915 1.3243 2.2398 9 7 5.4832 0.4364 1.8174 10 6 6.1704 1.6009 2.3812 11 6 7.6609 1.3988 2.2872 12 6 8.3427 0.7908 3.3246 13 6 9.7091 0.6011 3.2363 14 6 10.3952 1.0289 2.1151 15 6 9.7142 1.6417 1.0798 16 6 8.3471 1.8272 1.1662 17 6 1.5818 -2.1568 1.2227 18 8 2.2885 -3.0100 0.7292 19 7 0.3865 -2.4924 1.7472 20 6 -0.1067 -3.8666 1.6263 21 1 0.7320 -4.5602 1.6871 22 6 -0.8139 -4.0381 0.2804 23 6 -1.0768 -4.1522 2.7437 24 1 -1.3036 -3.3866 3.4707 25 6 -1.6755 -5.3907 2.8369 26 7 -1.3997 -6.3228 1.9512 27 14 -2.8785 -5.7445 4.2215 28 1 -4.0208 -4.7992 4.1384 29 1 -3.3783 -7.1376 4.0990 30 1 -2.1924 -5.5784 5.5279 31 1 -0.3633 0.4151 0.9401 32 1 -0.3634 0.6067 -0.8295 33 1 -0.3634 -1.0216 -0.1105 34 1 1.8933 -0.5139 -0.8900 35 1 3.1301 1.4424 -0.0005 36 1 1.6768 1.9563 -0.8899 37 1 1.6768 1.9562 0.8901 38 1 4.0184 -1.4181 0.9198 39 1 5.9976 -0.3048 1.4612 40 1 5.8892 2.4941 1.8232 41 1 5.8849 1.7206 3.4263 42 1 7.8074 0.4610 4.2027 43 1 10.2413 0.1227 4.0451 44 1 11.4635 0.8847 2.0480 45 1 10.2503 1.9762 0.2041 46 1 7.8150 2.3063 0.3576 47 1 -0.1473 -1.8241 2.2048 48 1 -1.6525 -3.3445 0.2197 49 1 -1.1812 -5.0604 0.1907 50 1 -0.1122 -3.8314 -0.5277 51 1 -1.8206 -7.1943 2.0171 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356414491.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:10 Heat of formation + Delta-G solvation = -73.491572 kcal Electronic energy + Delta-G solvation = -30476.838916 eV Core-core repulsion = 26374.805302 eV Total energy + Delta-G solvation = -4102.033614 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.75463 -40.58817 -39.93429 -37.36571 -36.68781 -35.77841 -34.57169 -34.11804 -32.14429 -31.79743 -31.10190 -28.42157 -27.90134 -27.31035 -26.43359 -23.47772 -23.34274 -22.33643 -22.03397 -21.43861 -21.09384 -19.97302 -18.77328 -17.92474 -17.57333 -17.22284 -17.08616 -16.93444 -16.21519 -16.11489 -16.01438 -15.79025 -15.66060 -15.09350 -14.92489 -14.53319 -14.40750 -14.27991 -13.85100 -13.80421 -13.70522 -13.52512 -13.44841 -13.41007 -13.02337 -12.93726 -12.91432 -12.73894 -12.45155 -12.26221 -12.16242 -11.99847 -11.95961 -11.91591 -11.82153 -11.29770 -11.10390 -10.81817 -10.58865 -10.27686 -9.85938 -9.80904 -9.78527 -9.76438 -8.17072 -6.33992 0.28000 0.49128 1.44936 1.46996 1.49969 1.55133 1.77604 2.12722 2.35826 2.58442 2.87459 3.13312 3.33781 3.67522 3.75710 3.82953 3.94523 3.95828 4.15074 4.28816 4.29882 4.34803 4.40086 4.59634 4.68017 4.69319 4.77518 4.78906 4.84087 4.93124 4.99798 5.00162 5.06483 5.10810 5.15264 5.15680 5.28988 5.38688 5.41113 5.46113 5.52057 5.54559 5.58948 5.61870 5.65331 5.69106 5.87566 5.94314 6.08318 6.10795 6.72412 6.86864 7.00239 7.29899 7.45720 7.54003 8.88605 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014700 B = 0.002122 C = 0.001978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.357962 B =13192.265522 C =14154.304409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.091 4.091 3 C -0.119 4.119 4 C 0.163 3.837 5 H 0.105 0.895 6 N -0.726 5.726 7 C 0.708 3.292 8 O -0.613 6.613 9 N -0.732 5.732 10 C 0.186 3.814 11 C -0.115 4.115 12 C -0.111 4.111 13 C -0.131 4.131 14 C -0.117 4.117 15 C -0.129 4.129 16 C -0.107 4.107 17 C 0.504 3.496 18 O -0.588 6.588 19 N -0.695 5.695 20 C 0.272 3.728 21 H 0.001 0.999 22 C -0.132 4.132 23 C -0.547 4.547 24 H 0.071 0.929 25 C 0.016 3.984 26 N -0.915 5.915 27 Si 0.969 3.031 28 H -0.264 1.264 29 H -0.286 1.286 30 H -0.273 1.273 31 H 0.069 0.931 32 H 0.077 0.923 33 H 0.046 0.954 34 H 0.067 0.933 35 H 0.042 0.958 36 H 0.063 0.937 37 H 0.057 0.943 38 H 0.407 0.593 39 H 0.406 0.594 40 H 0.073 0.927 41 H 0.067 0.933 42 H 0.126 0.874 43 H 0.139 0.861 44 H 0.142 0.858 45 H 0.142 0.858 46 H 0.132 0.868 47 H 0.404 0.596 48 H 0.042 0.958 49 H 0.066 0.934 50 H 0.014 0.986 51 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.793 18.317 -1.782 26.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.111 4.111 3 C -0.177 4.177 4 C 0.053 3.947 5 H 0.123 0.877 6 N -0.382 5.382 7 C 0.409 3.591 8 O -0.494 6.494 9 N -0.388 5.388 10 C 0.063 3.937 11 C -0.116 4.116 12 C -0.129 4.129 13 C -0.148 4.148 14 C -0.135 4.135 15 C -0.147 4.147 16 C -0.125 4.125 17 C 0.290 3.710 18 O -0.469 6.469 19 N -0.343 5.343 20 C 0.169 3.831 21 H 0.019 0.981 22 C -0.190 4.190 23 C -0.586 4.586 24 H 0.089 0.911 25 C -0.184 4.184 26 N -0.553 5.553 27 Si 0.794 3.206 28 H -0.189 1.189 29 H -0.212 1.212 30 H -0.198 1.198 31 H 0.088 0.912 32 H 0.096 0.904 33 H 0.066 0.934 34 H 0.085 0.915 35 H 0.062 0.938 36 H 0.082 0.918 37 H 0.076 0.924 38 H 0.243 0.757 39 H 0.241 0.759 40 H 0.091 0.909 41 H 0.085 0.915 42 H 0.144 0.856 43 H 0.156 0.844 44 H 0.160 0.840 45 H 0.160 0.840 46 H 0.150 0.850 47 H 0.240 0.760 48 H 0.061 0.939 49 H 0.085 0.915 50 H 0.033 0.967 51 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 18.628 18.368 -1.757 26.220 hybrid contribution -0.365 -1.191 0.471 1.331 sum 18.263 17.178 -1.286 25.105 Atomic orbital electron populations 1.21918 0.93279 1.02193 1.03577 1.21368 0.97054 0.97110 0.95600 1.21697 1.00243 0.93824 1.01910 1.20695 0.80863 0.91487 1.01660 0.87708 1.44790 1.05923 1.21406 1.66104 1.15831 0.82391 0.82384 0.78536 1.90908 1.65932 1.38009 1.54506 1.45082 1.03664 1.23364 1.66656 1.19984 0.87076 0.87592 0.99052 1.19829 0.94247 1.01623 0.95894 1.21293 0.95087 0.97979 0.98572 1.21446 0.94203 1.00128 0.99066 1.21555 1.01179 0.97285 0.93527 1.21465 0.94252 0.99222 0.99730 1.21296 0.94965 0.99059 0.97221 1.20931 0.81710 0.90609 0.77774 1.90622 1.55589 1.52535 1.48171 1.46289 1.19139 1.13483 1.55413 1.18371 0.92534 0.78097 0.94131 0.98083 1.21887 0.98446 1.02550 0.96165 1.21497 1.25990 0.99294 1.11776 0.91074 1.25748 0.98368 0.95705 0.98587 1.70031 1.44055 1.04847 1.36387 0.85439 0.78975 0.77212 0.78960 1.18881 1.21177 1.19832 0.91218 0.90381 0.93450 0.91498 0.93844 0.91776 0.92363 0.75693 0.75873 0.90885 0.91471 0.85570 0.84358 0.84002 0.84037 0.85039 0.76045 0.93890 0.91531 0.96664 0.92549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.78 8.58 71.98 0.62 -3.16 16 2 C -0.09 -2.42 2.67 -10.80 -0.03 -2.45 16 3 C -0.12 -2.92 7.69 71.98 0.55 -2.36 16 4 C 0.16 4.94 2.23 44.25 0.10 5.03 16 5 H 0.11 3.19 7.58 -2.39 -0.02 3.17 16 6 N -0.73 -20.18 4.92 -461.40 -2.27 -22.45 16 7 C 0.71 18.96 6.84 179.06 1.22 20.18 16 8 O -0.61 -19.55 13.47 -4.02 -0.05 -19.61 16 9 N -0.73 -14.77 5.55 -482.29 -2.68 -17.45 16 10 C 0.19 3.36 5.80 85.64 0.50 3.85 16 11 C -0.12 -1.77 5.25 -19.86 -0.10 -1.87 16 12 C -0.11 -1.63 9.70 22.27 0.22 -1.42 16 13 C -0.13 -1.64 10.05 22.27 0.22 -1.42 16 14 C -0.12 -1.33 10.05 22.27 0.22 -1.10 16 15 C -0.13 -1.50 10.05 22.27 0.22 -1.28 16 16 C -0.11 -1.45 9.70 22.27 0.22 -1.23 16 17 C 0.50 19.50 6.27 87.66 0.55 20.05 16 18 O -0.59 -26.96 15.70 -3.03 -0.05 -27.01 16 19 N -0.69 -28.20 4.06 -446.09 -1.81 -30.01 16 20 C 0.27 13.77 2.60 44.25 0.12 13.88 16 21 H 0.00 0.08 7.51 -2.38 -0.02 0.06 16 22 C -0.13 -6.45 9.26 71.98 0.67 -5.78 16 23 C -0.55 -28.63 8.73 25.60 0.22 -28.41 16 24 H 0.07 3.50 7.74 -2.91 -0.02 3.47 16 25 C 0.02 0.86 5.30 84.65 0.45 1.31 16 26 N -0.92 -51.79 11.32 21.45 0.24 -51.54 16 27 Si 0.97 41.82 29.54 68.60 2.03 43.85 16 28 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 29 H -0.29 -12.27 7.11 99.48 0.71 -11.56 16 30 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 31 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.05 1.39 6.91 -2.39 -0.02 1.37 16 34 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.04 1.13 5.84 -2.38 -0.01 1.11 16 36 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.06 1.54 7.38 -2.39 -0.02 1.52 16 38 H 0.41 11.10 7.83 -92.71 -0.73 10.38 16 39 H 0.41 6.92 8.48 -92.71 -0.79 6.13 16 40 H 0.07 1.34 8.08 -2.38 -0.02 1.32 16 41 H 0.07 1.32 8.08 -2.39 -0.02 1.30 16 42 H 0.13 1.74 8.06 -2.91 -0.02 1.72 16 43 H 0.14 1.24 8.06 -2.91 -0.02 1.22 16 44 H 0.14 0.97 8.06 -2.91 -0.02 0.95 16 45 H 0.14 1.06 8.06 -2.91 -0.02 1.03 16 46 H 0.13 1.51 8.06 -2.91 -0.02 1.49 16 47 H 0.40 14.24 8.45 -92.71 -0.78 13.46 16 48 H 0.04 1.92 8.14 -2.39 -0.02 1.91 16 49 H 0.07 3.60 6.07 -2.39 -0.01 3.59 16 50 H 0.01 0.69 8.14 -2.38 -0.02 0.67 16 51 H 0.27 14.28 8.31 -92.71 -0.77 13.51 16 Total: -1.00 -67.26 414.04 0.04 -67.23 By element: Atomic # 1 Polarization: 44.51 SS G_CDS: -1.34 Total: 43.17 kcal Atomic # 6 Polarization: 7.86 SS G_CDS: 5.97 Total: 13.83 kcal Atomic # 7 Polarization: -114.94 SS G_CDS: -6.51 Total: -121.46 kcal Atomic # 8 Polarization: -46.51 SS G_CDS: -0.10 Total: -46.62 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 2.03 Total: 43.85 kcal Total: -67.26 0.04 -67.23 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356414491.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.265 kcal (2) G-P(sol) polarization free energy of solvation -67.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds