Wall clock time and date at job start Wed Apr 1 2020 04:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47016 * 2 1 4 4 C 1.53002 * 109.47301 * 120.00418 * 2 1 3 5 5 H 1.08995 * 109.46764 * 184.99883 * 4 2 1 6 6 N 1.46499 * 109.46648 * 304.99807 * 4 2 1 7 7 C 1.34775 * 120.00021 * 274.99628 * 6 4 2 8 8 O 1.21589 * 120.00075 * 0.02562 * 7 6 4 9 9 N 1.34776 * 120.00210 * 180.02562 * 7 6 4 10 10 C 1.46501 * 120.00261 * 180.02562 * 9 7 6 11 11 C 1.50698 * 109.47054 * 180.02562 * 10 9 7 12 12 C 1.38239 * 119.99675 * 269.72753 * 11 10 9 13 13 C 1.38241 * 119.99882 * 179.77045 * 12 11 10 14 14 C 1.38232 * 119.99924 * 0.49874 * 13 12 11 15 15 C 1.38233 * 120.00114 * 359.75476 * 14 13 12 16 16 C 1.38230 * 120.00534 * 90.00022 * 11 10 9 17 17 C 1.50699 * 109.47295 * 64.99922 * 4 2 1 18 18 O 1.21279 * 119.99997 * 240.00166 * 17 4 2 19 19 N 1.34777 * 120.00179 * 59.99816 * 17 4 2 20 20 C 1.46497 * 120.00376 * 179.97438 * 19 17 4 21 21 H 1.09002 * 109.46725 * 35.00314 * 20 19 17 22 22 C 1.52997 * 109.47188 * 275.00479 * 20 19 17 23 23 C 1.50697 * 109.47081 * 155.00043 * 20 19 17 24 24 H 1.07999 * 120.00055 * 0.02562 * 23 20 19 25 25 C 1.37878 * 119.99687 * 180.02562 * 23 20 19 26 26 N 1.31511 * 120.00458 * 359.97438 * 25 23 20 27 27 Si 1.86805 * 119.99926 * 180.02562 * 25 23 20 28 28 H 1.48500 * 109.47262 * 0.02562 * 27 25 23 29 29 H 1.48505 * 109.46882 * 119.99668 * 27 25 23 30 30 H 1.48501 * 109.47152 * 239.99726 * 27 25 23 31 31 H 1.08995 * 109.46971 * 299.99719 * 1 2 3 32 32 H 1.08999 * 109.47475 * 59.99644 * 1 2 3 33 33 H 1.09001 * 109.47217 * 180.02562 * 1 2 3 34 34 H 1.09001 * 109.46659 * 240.00608 * 2 1 3 35 35 H 1.08999 * 109.47516 * 299.99967 * 3 2 1 36 36 H 1.08995 * 109.47021 * 60.00312 * 3 2 1 37 37 H 1.09004 * 109.47156 * 180.02562 * 3 2 1 38 38 H 0.97000 * 119.99832 * 95.00370 * 6 4 2 39 39 H 0.97000 * 119.99644 * 0.02562 * 9 7 6 40 40 H 1.08998 * 109.47103 * 300.00343 * 10 9 7 41 41 H 1.08998 * 109.46977 * 60.00465 * 10 9 7 42 42 H 1.07997 * 120.00178 * 359.97438 * 12 11 10 43 43 H 1.07998 * 119.99841 * 180.22896 * 13 12 11 44 44 H 1.07999 * 120.00116 * 179.72246 * 14 13 12 45 45 H 1.07996 * 120.00177 * 179.97438 * 15 14 13 46 46 H 1.08003 * 119.99802 * 0.02562 * 16 11 10 47 47 H 0.97006 * 119.99702 * 0.02562 * 19 17 4 48 48 H 1.09002 * 109.47153 * 299.99573 * 22 20 19 49 49 H 1.09001 * 109.46832 * 179.97438 * 22 20 19 50 50 H 1.09004 * 109.47261 * 59.99745 * 22 20 19 51 51 H 0.96999 * 120.00480 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 3.1263 -0.6444 1.2950 6 7 1.4559 -0.1037 2.4423 7 6 2.0349 0.9826 2.9909 8 8 3.0419 1.4504 2.4953 9 7 1.4979 1.5506 4.0888 10 6 2.1270 2.7318 4.6848 11 6 1.3369 3.1663 5.8923 12 6 0.3068 4.0775 5.7530 13 6 -0.4210 4.4725 6.8599 14 6 -0.1120 3.9641 8.1077 15 6 0.9215 3.0569 8.2478 16 6 1.6459 2.6579 7.1401 17 6 1.6414 -2.1734 1.1888 18 8 0.9386 -2.6459 2.0569 19 7 2.0658 -2.9470 0.1700 20 6 1.6788 -4.3587 0.1116 21 1 0.6680 -4.4747 0.5026 22 6 2.6498 -5.1890 0.9533 23 6 1.7216 -4.8325 -1.3183 24 1 2.0089 -4.1504 -2.1049 25 6 1.3941 -6.1368 -1.6224 26 7 1.0448 -6.9676 -0.6647 27 14 1.4479 -6.7244 -3.3949 28 1 1.8701 -5.6052 -4.2748 29 1 2.4181 -7.8421 -3.5166 30 1 0.0990 -7.1932 -3.8021 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3634 -1.0277 0.0005 34 1 1.8932 -0.5138 -0.8901 35 1 1.6767 1.9564 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 3.1300 1.4425 -0.0005 38 1 0.6524 -0.4768 2.8375 39 1 0.6948 1.1771 4.4844 40 1 3.1457 2.4879 4.9861 41 1 2.1479 3.5400 3.9538 42 1 0.0685 4.4784 4.7789 43 1 -1.2282 5.1817 6.7505 44 1 -0.6777 4.2761 8.9731 45 1 1.1631 2.6600 9.2227 46 1 2.4539 1.9496 7.2497 47 1 2.6283 -2.5691 -0.5242 48 1 3.6606 -5.0729 0.5623 49 1 2.3615 -6.2393 0.9102 50 1 2.6188 -4.8462 1.9876 51 1 0.8140 -7.8851 -0.8787 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356414492.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:14 Heat of formation + Delta-G solvation = -52.834122 kcal Electronic energy + Delta-G solvation = -30529.429304 eV Core-core repulsion = 26428.291464 eV Total energy + Delta-G solvation = -4101.137839 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.56898 -39.66074 -38.79173 -36.19535 -34.90161 -34.78671 -33.10769 -32.32203 -31.34068 -31.27517 -29.29964 -27.18828 -26.95933 -25.66853 -25.25310 -22.95030 -21.77843 -21.48908 -21.17459 -20.03173 -19.19612 -18.74190 -17.52056 -16.91122 -16.21951 -16.15142 -15.62181 -15.56666 -15.31352 -15.20486 -14.67534 -14.49607 -14.18030 -13.95731 -13.80616 -13.77064 -13.23326 -13.17076 -12.93287 -12.86313 -12.67336 -12.44577 -12.07294 -11.85703 -11.69590 -11.43454 -11.40876 -11.21315 -11.12499 -10.98571 -10.83947 -10.76497 -10.66703 -10.32633 -10.26395 -10.17134 -9.31475 -9.27736 -9.21445 -9.12168 -9.06508 -8.71251 -8.58019 -7.97844 -6.14836 -4.24023 0.85637 1.02367 2.67469 3.19239 3.22552 3.29941 3.31574 3.33967 3.44746 4.00803 4.31788 4.33285 4.37264 4.49281 4.63669 4.75790 4.95254 5.02757 5.09448 5.11273 5.17302 5.19598 5.36297 5.39691 5.46627 5.62486 5.67696 5.68967 5.81046 5.87116 6.04479 6.05759 6.12388 6.13418 6.19347 6.22715 6.32140 6.41938 6.56470 6.58208 6.60594 6.79655 6.91422 6.94876 7.11803 7.39136 7.51510 7.66311 7.87517 8.04432 8.11692 8.56990 8.65482 8.73674 9.02260 9.43414 10.91119 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.020091 B = 0.002025 C = 0.001935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.349330 B =13824.753988 C =14465.811640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.102 4.102 3 C -0.133 4.133 4 C 0.148 3.852 5 H 0.108 0.892 6 N -0.720 5.720 7 C 0.708 3.292 8 O -0.589 6.589 9 N -0.745 5.745 10 C 0.183 3.817 11 C -0.107 4.107 12 C -0.100 4.100 13 C -0.123 4.123 14 C -0.114 4.114 15 C -0.123 4.123 16 C -0.099 4.099 17 C 0.502 3.498 18 O -0.554 6.554 19 N -0.701 5.701 20 C 0.265 3.735 21 H 0.049 0.951 22 C -0.148 4.148 23 C -0.532 4.532 24 H 0.063 0.937 25 C 0.066 3.934 26 N -0.883 5.883 27 Si 0.902 3.098 28 H -0.272 1.272 29 H -0.283 1.283 30 H -0.283 1.283 31 H 0.052 0.948 32 H 0.054 0.946 33 H 0.060 0.940 34 H 0.084 0.916 35 H 0.044 0.956 36 H 0.057 0.943 37 H 0.060 0.940 38 H 0.405 0.595 39 H 0.397 0.603 40 H 0.074 0.926 41 H 0.074 0.926 42 H 0.124 0.876 43 H 0.123 0.877 44 H 0.122 0.878 45 H 0.123 0.877 46 H 0.125 0.875 47 H 0.390 0.610 48 H 0.027 0.973 49 H 0.090 0.910 50 H 0.014 0.986 51 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.252 22.080 12.569 25.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.123 4.123 3 C -0.191 4.191 4 C 0.039 3.961 5 H 0.126 0.874 6 N -0.376 5.376 7 C 0.408 3.592 8 O -0.468 6.468 9 N -0.401 5.401 10 C 0.059 3.941 11 C -0.108 4.108 12 C -0.118 4.118 13 C -0.142 4.142 14 C -0.132 4.132 15 C -0.141 4.141 16 C -0.118 4.118 17 C 0.285 3.715 18 O -0.433 6.433 19 N -0.349 5.349 20 C 0.164 3.836 21 H 0.067 0.933 22 C -0.206 4.206 23 C -0.571 4.571 24 H 0.081 0.919 25 C -0.137 4.137 26 N -0.521 5.521 27 Si 0.729 3.271 28 H -0.197 1.197 29 H -0.209 1.209 30 H -0.209 1.209 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.102 0.898 35 H 0.064 0.936 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.241 0.759 39 H 0.231 0.769 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.142 0.858 43 H 0.141 0.859 44 H 0.140 0.860 45 H 0.141 0.859 46 H 0.143 0.857 47 H 0.223 0.777 48 H 0.046 0.954 49 H 0.109 0.891 50 H 0.033 0.967 51 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.864 21.927 12.730 25.369 hybrid contribution -0.481 -0.624 -0.801 1.123 sum -1.344 21.303 11.929 24.453 Atomic orbital electron populations 1.21789 0.94665 1.02364 1.01405 1.21516 0.96828 0.97317 0.96591 1.21828 1.01475 0.94739 1.01021 1.20792 0.99833 0.90430 0.85070 0.87424 1.44741 1.31954 1.30208 1.30670 1.15774 0.83065 0.80342 0.80026 1.90924 1.26105 1.65437 1.64290 1.45117 1.32254 1.32469 1.30306 1.19973 0.95389 0.87221 0.91536 1.19934 0.97653 0.98513 0.94690 1.21141 0.94781 0.96874 0.99022 1.21183 0.99899 1.00325 0.92743 1.21232 0.97381 0.97064 0.97544 1.21194 0.96109 0.97963 0.98807 1.21164 0.99542 0.98990 0.92056 1.20321 0.81021 0.87302 0.82832 1.90639 1.38849 1.74875 1.38932 1.46488 1.50901 1.13263 1.24211 1.18770 0.95338 0.73655 0.95855 0.93313 1.22086 0.98348 1.04161 0.96042 1.21242 1.47622 0.96391 0.91826 0.91928 1.24890 0.94683 0.96455 0.97717 1.69908 1.44902 1.05578 1.31690 0.86392 0.77730 0.78762 0.84204 1.19686 1.20891 1.20907 0.92867 0.92650 0.92125 0.89799 0.93648 0.92375 0.92105 0.75894 0.76894 0.90790 0.90795 0.85780 0.85903 0.86025 0.85863 0.85711 0.77676 0.95386 0.89098 0.96688 0.92624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 8.79 37.16 0.33 -1.62 16 2 C -0.10 -1.38 2.69 -90.62 -0.24 -1.63 16 3 C -0.13 -1.72 7.79 37.16 0.29 -1.43 16 4 C 0.15 2.25 2.36 -69.08 -0.16 2.09 16 5 H 0.11 1.68 7.58 -51.93 -0.39 1.29 16 6 N -0.72 -9.96 3.93 -59.81 -0.24 -10.20 16 7 C 0.71 9.58 7.13 -86.92 -0.62 8.96 16 8 O -0.59 -9.53 13.48 5.29 0.07 -9.46 16 9 N -0.75 -7.69 5.55 -66.42 -0.37 -8.05 16 10 C 0.18 1.68 5.80 -5.19 -0.03 1.65 16 11 C -0.11 -0.86 5.25 -104.63 -0.55 -1.41 16 12 C -0.10 -0.73 9.70 -39.58 -0.38 -1.12 16 13 C -0.12 -0.83 10.05 -39.58 -0.40 -1.23 16 14 C -0.11 -0.75 10.05 -39.59 -0.40 -1.15 16 15 C -0.12 -0.85 10.05 -39.58 -0.40 -1.25 16 16 C -0.10 -0.76 9.70 -39.58 -0.38 -1.14 16 17 C 0.50 9.53 6.17 -10.99 -0.07 9.46 16 18 O -0.55 -12.29 15.50 5.56 0.09 -12.20 16 19 N -0.70 -14.08 4.93 -54.94 -0.27 -14.35 16 20 C 0.27 6.58 2.56 -69.09 -0.18 6.40 16 21 H 0.05 1.39 7.58 -51.93 -0.39 1.00 16 22 C -0.15 -3.64 9.26 37.16 0.34 -3.29 16 23 C -0.53 -13.80 8.73 -34.44 -0.30 -14.10 16 24 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 25 C 0.07 1.74 5.30 -17.82 -0.09 1.65 16 26 N -0.88 -24.55 11.32 55.43 0.63 -23.92 16 27 Si 0.90 20.42 29.54 -169.99 -5.02 15.40 16 28 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 29 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 30 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 31 H 0.05 0.67 7.47 -51.93 -0.39 0.28 16 32 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.95 7.38 -51.93 -0.38 0.57 16 34 H 0.08 1.11 7.43 -51.93 -0.39 0.72 16 35 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.80 5.64 -51.93 -0.29 0.51 16 37 H 0.06 0.83 7.85 -51.93 -0.41 0.42 16 38 H 0.40 5.49 7.80 -40.82 -0.32 5.17 16 39 H 0.40 3.51 8.48 -40.82 -0.35 3.16 16 40 H 0.07 0.73 8.08 -51.93 -0.42 0.31 16 41 H 0.07 0.70 8.08 -51.93 -0.42 0.28 16 42 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 43 H 0.12 0.60 8.06 -52.49 -0.42 0.18 16 44 H 0.12 0.56 8.06 -52.49 -0.42 0.14 16 45 H 0.12 0.64 8.06 -52.49 -0.42 0.22 16 46 H 0.12 0.87 8.06 -52.48 -0.42 0.45 16 47 H 0.39 6.88 7.90 -40.82 -0.32 6.56 16 48 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 49 H 0.09 2.43 6.07 -51.93 -0.32 2.12 16 50 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 51 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 413.21 15.07 6.23 6.23 Total: -1.00 -31.11 413.21 -10.26 -41.37 By element: Atomic # 1 Polarization: 22.46 SS G_CDS: -8.13 Total: 14.33 kcal Atomic # 6 Polarization: 4.11 SS G_CDS: -3.25 Total: 0.86 kcal Atomic # 7 Polarization: -56.28 SS G_CDS: -0.25 Total: -56.52 kcal Atomic # 8 Polarization: -21.82 SS G_CDS: 0.16 Total: -21.66 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -31.11 -10.26 -41.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356414492.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.461 kcal (2) G-P(sol) polarization free energy of solvation -31.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds