Wall clock time and date at job start Wed Apr 1 2020 04:53:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47016 * 2 1 4 4 C 1.53002 * 109.47301 * 120.00418 * 2 1 3 5 5 H 1.08995 * 109.46764 * 184.99883 * 4 2 1 6 6 N 1.46499 * 109.46648 * 304.99807 * 4 2 1 7 7 C 1.34775 * 120.00021 * 274.99628 * 6 4 2 8 8 O 1.21589 * 120.00075 * 0.02562 * 7 6 4 9 9 N 1.34776 * 120.00210 * 180.02562 * 7 6 4 10 10 C 1.46501 * 120.00261 * 180.02562 * 9 7 6 11 11 C 1.50698 * 109.47054 * 180.02562 * 10 9 7 12 12 C 1.38239 * 119.99675 * 269.72753 * 11 10 9 13 13 C 1.38241 * 119.99882 * 179.77045 * 12 11 10 14 14 C 1.38232 * 119.99924 * 0.49874 * 13 12 11 15 15 C 1.38233 * 120.00114 * 359.75476 * 14 13 12 16 16 C 1.38230 * 120.00534 * 90.00022 * 11 10 9 17 17 C 1.50699 * 109.47295 * 64.99922 * 4 2 1 18 18 O 1.21279 * 119.99997 * 240.00166 * 17 4 2 19 19 N 1.34777 * 120.00179 * 59.99816 * 17 4 2 20 20 C 1.46497 * 120.00376 * 179.97438 * 19 17 4 21 21 H 1.09002 * 109.46725 * 35.00314 * 20 19 17 22 22 C 1.52997 * 109.47188 * 275.00479 * 20 19 17 23 23 C 1.50697 * 109.47081 * 155.00043 * 20 19 17 24 24 H 1.07999 * 120.00055 * 0.02562 * 23 20 19 25 25 C 1.37878 * 119.99687 * 180.02562 * 23 20 19 26 26 N 1.31511 * 120.00458 * 359.97438 * 25 23 20 27 27 Si 1.86805 * 119.99926 * 180.02562 * 25 23 20 28 28 H 1.48500 * 109.47262 * 0.02562 * 27 25 23 29 29 H 1.48505 * 109.46882 * 119.99668 * 27 25 23 30 30 H 1.48501 * 109.47152 * 239.99726 * 27 25 23 31 31 H 1.08995 * 109.46971 * 299.99719 * 1 2 3 32 32 H 1.08999 * 109.47475 * 59.99644 * 1 2 3 33 33 H 1.09001 * 109.47217 * 180.02562 * 1 2 3 34 34 H 1.09001 * 109.46659 * 240.00608 * 2 1 3 35 35 H 1.08999 * 109.47516 * 299.99967 * 3 2 1 36 36 H 1.08995 * 109.47021 * 60.00312 * 3 2 1 37 37 H 1.09004 * 109.47156 * 180.02562 * 3 2 1 38 38 H 0.97000 * 119.99832 * 95.00370 * 6 4 2 39 39 H 0.97000 * 119.99644 * 0.02562 * 9 7 6 40 40 H 1.08998 * 109.47103 * 300.00343 * 10 9 7 41 41 H 1.08998 * 109.46977 * 60.00465 * 10 9 7 42 42 H 1.07997 * 120.00178 * 359.97438 * 12 11 10 43 43 H 1.07998 * 119.99841 * 180.22896 * 13 12 11 44 44 H 1.07999 * 120.00116 * 179.72246 * 14 13 12 45 45 H 1.07996 * 120.00177 * 179.97438 * 15 14 13 46 46 H 1.08003 * 119.99802 * 0.02562 * 16 11 10 47 47 H 0.97006 * 119.99702 * 0.02562 * 19 17 4 48 48 H 1.09002 * 109.47153 * 299.99573 * 22 20 19 49 49 H 1.09001 * 109.46832 * 179.97438 * 22 20 19 50 50 H 1.09004 * 109.47261 * 59.99745 * 22 20 19 51 51 H 0.96999 * 120.00480 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 3.1263 -0.6444 1.2950 6 7 1.4559 -0.1037 2.4423 7 6 2.0349 0.9826 2.9909 8 8 3.0419 1.4504 2.4953 9 7 1.4979 1.5506 4.0888 10 6 2.1270 2.7318 4.6848 11 6 1.3369 3.1663 5.8923 12 6 0.3068 4.0775 5.7530 13 6 -0.4210 4.4725 6.8599 14 6 -0.1120 3.9641 8.1077 15 6 0.9215 3.0569 8.2478 16 6 1.6459 2.6579 7.1401 17 6 1.6414 -2.1734 1.1888 18 8 0.9386 -2.6459 2.0569 19 7 2.0658 -2.9470 0.1700 20 6 1.6788 -4.3587 0.1116 21 1 0.6680 -4.4747 0.5026 22 6 2.6498 -5.1890 0.9533 23 6 1.7216 -4.8325 -1.3183 24 1 2.0089 -4.1504 -2.1049 25 6 1.3941 -6.1368 -1.6224 26 7 1.0448 -6.9676 -0.6647 27 14 1.4479 -6.7244 -3.3949 28 1 1.8701 -5.6052 -4.2748 29 1 2.4181 -7.8421 -3.5166 30 1 0.0990 -7.1932 -3.8021 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3634 -1.0277 0.0005 34 1 1.8932 -0.5138 -0.8901 35 1 1.6767 1.9564 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 3.1300 1.4425 -0.0005 38 1 0.6524 -0.4768 2.8375 39 1 0.6948 1.1771 4.4844 40 1 3.1457 2.4879 4.9861 41 1 2.1479 3.5400 3.9538 42 1 0.0685 4.4784 4.7789 43 1 -1.2282 5.1817 6.7505 44 1 -0.6777 4.2761 8.9731 45 1 1.1631 2.6600 9.2227 46 1 2.4539 1.9496 7.2497 47 1 2.6283 -2.5691 -0.5242 48 1 3.6606 -5.0729 0.5623 49 1 2.3615 -6.2393 0.9102 50 1 2.6188 -4.8462 1.9876 51 1 0.8140 -7.8851 -0.8787 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356414492.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:13 Heat of formation + Delta-G solvation = -72.526803 kcal Electronic energy + Delta-G solvation = -30530.283243 eV Core-core repulsion = 26428.291464 eV Total energy + Delta-G solvation = -4101.991778 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.76384 -40.55999 -39.91823 -37.43822 -36.66676 -35.77624 -34.47166 -33.94837 -32.08526 -31.79284 -31.11745 -28.38665 -28.03312 -27.32760 -26.55620 -23.47428 -23.25599 -22.48843 -22.11909 -21.54520 -20.56553 -19.92337 -18.87245 -17.86317 -17.49990 -17.31781 -16.99563 -16.91088 -16.30304 -16.19226 -15.95755 -15.67984 -15.39123 -15.13601 -15.01264 -14.64624 -14.39769 -14.30838 -14.19628 -13.83165 -13.69034 -13.58044 -13.45005 -13.22753 -13.00680 -12.89561 -12.86729 -12.74345 -12.33977 -12.27254 -12.12268 -12.00644 -11.96558 -11.91596 -11.75588 -11.31354 -11.08656 -10.78193 -10.58874 -10.25129 -9.86022 -9.81624 -9.78129 -9.74163 -8.16814 -6.33456 0.28670 0.49470 1.45009 1.46502 1.57795 1.64188 1.70135 2.15914 2.36792 2.59116 2.87762 3.14106 3.35918 3.68254 3.75739 3.79898 3.94978 3.99561 4.15426 4.22181 4.29891 4.40550 4.48240 4.60206 4.68699 4.70116 4.75061 4.79324 4.83004 4.91918 4.96116 5.03628 5.06931 5.09745 5.13772 5.16026 5.30357 5.39567 5.40592 5.47414 5.53504 5.55289 5.60265 5.62224 5.65800 5.67974 5.88350 5.95653 6.08708 6.10074 6.73799 6.87778 7.03360 7.31328 7.47542 7.56720 8.89543 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.020091 B = 0.002025 C = 0.001935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.349330 B =13824.753988 C =14465.811640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.098 4.098 3 C -0.122 4.122 4 C 0.162 3.838 5 H 0.109 0.891 6 N -0.719 5.719 7 C 0.708 3.292 8 O -0.614 6.614 9 N -0.732 5.732 10 C 0.187 3.813 11 C -0.115 4.115 12 C -0.107 4.107 13 C -0.129 4.129 14 C -0.118 4.118 15 C -0.130 4.130 16 C -0.111 4.111 17 C 0.503 3.497 18 O -0.587 6.587 19 N -0.697 5.697 20 C 0.273 3.727 21 H 0.003 0.997 22 C -0.135 4.135 23 C -0.543 4.543 24 H 0.074 0.926 25 C 0.014 3.986 26 N -0.917 5.917 27 Si 0.970 3.030 28 H -0.259 1.259 29 H -0.281 1.281 30 H -0.284 1.284 31 H 0.058 0.942 32 H 0.072 0.928 33 H 0.032 0.968 34 H 0.090 0.910 35 H 0.062 0.938 36 H 0.048 0.952 37 H 0.053 0.947 38 H 0.406 0.594 39 H 0.406 0.594 40 H 0.066 0.934 41 H 0.073 0.927 42 H 0.132 0.868 43 H 0.142 0.858 44 H 0.142 0.858 45 H 0.138 0.862 46 H 0.126 0.874 47 H 0.405 0.595 48 H 0.039 0.961 49 H 0.067 0.933 50 H 0.012 0.988 51 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.301 23.912 11.979 26.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.118 4.118 3 C -0.179 4.179 4 C 0.052 3.948 5 H 0.126 0.874 6 N -0.375 5.375 7 C 0.408 3.592 8 O -0.495 6.495 9 N -0.388 5.388 10 C 0.063 3.937 11 C -0.115 4.115 12 C -0.125 4.125 13 C -0.147 4.147 14 C -0.136 4.136 15 C -0.148 4.148 16 C -0.129 4.129 17 C 0.289 3.711 18 O -0.468 6.468 19 N -0.346 5.346 20 C 0.170 3.830 21 H 0.021 0.979 22 C -0.194 4.194 23 C -0.581 4.581 24 H 0.093 0.907 25 C -0.186 4.186 26 N -0.555 5.555 27 Si 0.795 3.205 28 H -0.183 1.183 29 H -0.207 1.207 30 H -0.210 1.210 31 H 0.077 0.923 32 H 0.091 0.909 33 H 0.052 0.948 34 H 0.108 0.892 35 H 0.081 0.919 36 H 0.067 0.933 37 H 0.072 0.928 38 H 0.243 0.757 39 H 0.241 0.759 40 H 0.084 0.916 41 H 0.091 0.909 42 H 0.150 0.850 43 H 0.159 0.841 44 H 0.160 0.840 45 H 0.156 0.844 46 H 0.144 0.856 47 H 0.240 0.760 48 H 0.058 0.942 49 H 0.086 0.914 50 H 0.031 0.969 51 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.911 23.805 12.156 26.745 hybrid contribution -0.505 -1.151 -0.505 1.354 sum -1.416 22.655 11.651 25.515 Atomic orbital electron populations 1.21739 0.94472 1.00870 1.02606 1.21523 0.96884 0.97742 0.95679 1.21704 1.00897 0.93898 1.01422 1.20625 0.99834 0.87696 0.86654 0.87358 1.44687 1.31965 1.30378 1.30504 1.15834 0.82755 0.80101 0.80479 1.90907 1.27241 1.66124 1.65230 1.45071 1.32198 1.32375 1.29142 1.19971 0.95195 0.86513 0.91988 1.19827 0.98187 0.99344 0.94191 1.21298 0.94669 0.96763 0.99805 1.21464 1.00178 1.00472 0.92562 1.21550 0.97191 0.96518 0.98302 1.21443 0.96093 0.98042 0.99254 1.21291 0.99959 0.99337 0.92350 1.20933 0.79849 0.88674 0.81625 1.90621 1.40221 1.75920 1.40078 1.46212 1.51363 1.11782 1.25247 1.18353 0.93045 0.76148 0.95439 0.97873 1.21921 0.98822 1.02713 0.95979 1.21557 1.47328 0.96776 0.92415 0.90744 1.25773 0.94280 0.96708 1.01819 1.70049 1.45749 1.05893 1.33846 0.85317 0.77460 0.78412 0.79264 1.18311 1.20664 1.21038 0.92273 0.90919 0.94832 0.89175 0.91860 0.93264 0.92823 0.75707 0.75910 0.91559 0.90908 0.85035 0.84059 0.84018 0.84366 0.85593 0.75984 0.94194 0.91410 0.96936 0.92605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.57 8.79 71.98 0.63 -2.94 16 2 C -0.10 -2.52 2.69 -10.79 -0.03 -2.54 16 3 C -0.12 -2.91 7.79 71.98 0.56 -2.35 16 4 C 0.16 4.82 2.36 44.25 0.10 4.92 16 5 H 0.11 3.29 7.58 -2.39 -0.02 3.27 16 6 N -0.72 -19.60 3.93 -461.42 -1.81 -21.42 16 7 C 0.71 18.73 7.13 179.06 1.28 20.00 16 8 O -0.61 -19.47 13.48 -4.00 -0.05 -19.52 16 9 N -0.73 -14.63 5.55 -482.30 -2.68 -17.31 16 10 C 0.19 3.34 5.80 85.63 0.50 3.84 16 11 C -0.11 -1.75 5.25 -19.87 -0.10 -1.85 16 12 C -0.11 -1.44 9.70 22.27 0.22 -1.22 16 13 C -0.13 -1.49 10.05 22.27 0.22 -1.27 16 14 C -0.12 -1.32 10.05 22.27 0.22 -1.09 16 15 C -0.13 -1.63 10.05 22.27 0.22 -1.40 16 16 C -0.11 -1.62 9.70 22.27 0.22 -1.41 16 17 C 0.50 19.27 6.17 87.66 0.54 19.81 16 18 O -0.59 -26.71 15.50 -3.03 -0.05 -26.75 16 19 N -0.70 -28.06 4.93 -446.11 -2.20 -30.26 16 20 C 0.27 13.82 2.56 44.24 0.11 13.94 16 21 H 0.00 0.20 7.58 -2.39 -0.02 0.18 16 22 C -0.14 -6.80 9.26 71.98 0.67 -6.14 16 23 C -0.54 -28.05 8.73 25.60 0.22 -27.82 16 24 H 0.07 3.59 7.74 -2.91 -0.02 3.57 16 25 C 0.01 0.75 5.30 84.66 0.45 1.20 16 26 N -0.92 -51.86 11.32 21.45 0.24 -51.62 16 27 Si 0.97 41.51 29.54 68.60 2.03 43.54 16 28 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 29 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 30 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 31 H 0.06 1.42 7.47 -2.39 -0.02 1.41 16 32 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.03 1.03 7.38 -2.39 -0.02 1.02 16 34 H 0.09 2.22 7.43 -2.39 -0.02 2.20 16 35 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.05 1.27 5.64 -2.39 -0.01 1.26 16 37 H 0.05 1.37 7.85 -2.39 -0.02 1.35 16 38 H 0.41 10.96 7.80 -92.71 -0.72 10.24 16 39 H 0.41 6.86 8.48 -92.71 -0.79 6.08 16 40 H 0.07 1.30 8.08 -2.39 -0.02 1.28 16 41 H 0.07 1.33 8.08 -2.39 -0.02 1.31 16 42 H 0.13 1.50 8.06 -2.91 -0.02 1.47 16 43 H 0.14 1.05 8.06 -2.91 -0.02 1.02 16 44 H 0.14 0.96 8.06 -2.91 -0.02 0.93 16 45 H 0.14 1.22 8.06 -2.91 -0.02 1.20 16 46 H 0.13 1.72 8.06 -2.91 -0.02 1.70 16 47 H 0.40 13.92 7.90 -92.70 -0.73 13.18 16 48 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 49 H 0.07 3.73 6.07 -2.39 -0.01 3.71 16 50 H 0.01 0.58 8.14 -2.38 -0.02 0.56 16 51 H 0.26 14.17 8.31 -92.71 -0.77 13.40 16 Total: -1.00 -67.22 413.21 0.23 -66.99 By element: Atomic # 1 Polarization: 43.96 SS G_CDS: -1.28 Total: 42.68 kcal Atomic # 6 Polarization: 7.64 SS G_CDS: 6.04 Total: 13.68 kcal Atomic # 7 Polarization: -114.16 SS G_CDS: -6.45 Total: -120.61 kcal Atomic # 8 Polarization: -46.17 SS G_CDS: -0.10 Total: -46.28 kcal Atomic # 14 Polarization: 41.51 SS G_CDS: 2.03 Total: 43.54 kcal Total: -67.22 0.23 -66.99 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356414492.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.540 kcal (2) G-P(sol) polarization free energy of solvation -67.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds