Wall clock time and date at job start Wed Apr 1 2020 04:53:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53008 * 109.46863 * 2 1 4 4 C 1.52998 * 109.47238 * 119.99859 * 2 1 3 5 5 H 1.09003 * 109.47108 * 301.87106 * 4 2 1 6 6 N 1.46503 * 109.47024 * 181.87637 * 4 2 1 7 7 C 1.34778 * 120.00100 * 84.72739 * 6 4 2 8 8 O 1.21591 * 119.99840 * 0.27112 * 7 6 4 9 9 N 1.34772 * 120.00149 * 180.27750 * 7 6 4 10 10 C 1.46503 * 120.00204 * 179.97438 * 9 7 6 11 11 C 1.50695 * 109.46879 * 179.97438 * 10 9 7 12 12 C 1.38240 * 120.00335 * 269.72271 * 11 10 9 13 13 C 1.38236 * 120.00196 * 179.76814 * 12 11 10 14 14 C 1.38237 * 119.99795 * 0.50753 * 13 12 11 15 15 C 1.38235 * 120.00065 * 359.75161 * 14 13 12 16 16 C 1.38236 * 120.00256 * 359.97438 * 15 14 13 17 17 C 1.50695 * 109.47181 * 61.87341 * 4 2 1 18 18 O 1.21285 * 119.99741 * 91.87487 * 17 4 2 19 19 N 1.34777 * 120.00160 * 271.87624 * 17 4 2 20 20 C 1.46499 * 120.00021 * 185.05728 * 19 17 4 21 21 H 1.09002 * 109.46833 * 325.00037 * 20 19 17 22 22 C 1.53001 * 109.47201 * 84.99922 * 20 19 17 23 23 C 1.50701 * 109.47243 * 204.99690 * 20 19 17 24 24 H 1.07999 * 119.99714 * 0.02562 * 23 20 19 25 25 C 1.37869 * 120.00297 * 179.97438 * 23 20 19 26 26 N 1.31516 * 119.99782 * 0.02562 * 25 23 20 27 27 Si 1.86804 * 120.00268 * 180.02562 * 25 23 20 28 28 H 1.48497 * 109.46768 * 0.02562 * 27 25 23 29 29 H 1.48502 * 109.46935 * 120.00208 * 27 25 23 30 30 H 1.48496 * 109.47409 * 240.00322 * 27 25 23 31 31 H 1.08997 * 109.47142 * 294.16053 * 1 2 3 32 32 H 1.08996 * 109.47093 * 54.16344 * 1 2 3 33 33 H 1.08999 * 109.46726 * 174.16308 * 1 2 3 34 34 H 1.08996 * 109.47154 * 240.00259 * 2 1 3 35 35 H 1.08996 * 109.47032 * 180.02562 * 3 2 1 36 36 H 1.08997 * 109.47035 * 299.99751 * 3 2 1 37 37 H 1.08996 * 109.47025 * 60.00180 * 3 2 1 38 38 H 0.96998 * 119.99974 * 264.99641 * 6 4 2 39 39 H 0.97008 * 120.00050 * 359.97438 * 9 7 6 40 40 H 1.08999 * 109.46951 * 299.99454 * 10 9 7 41 41 H 1.09003 * 109.47050 * 59.99786 * 10 9 7 42 42 H 1.08000 * 119.99763 * 0.02562 * 12 11 10 43 43 H 1.07999 * 120.00310 * 180.23410 * 13 12 11 44 44 H 1.07993 * 119.99746 * 179.71909 * 14 13 12 45 45 H 1.08000 * 119.99875 * 179.97438 * 15 14 13 46 46 H 1.07996 * 120.00311 * 179.97438 * 16 15 14 47 47 H 0.97002 * 120.00100 * 5.05288 * 19 17 4 48 48 H 1.09002 * 109.47420 * 180.02562 * 22 20 19 49 49 H 1.09008 * 109.47066 * 300.00025 * 22 20 19 50 50 H 1.08994 * 109.47403 * 59.99697 * 22 20 19 51 51 H 0.96999 * 119.99939 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 1 1.6496 -0.2271 2.1389 6 7 3.5044 -0.6821 1.2720 7 6 4.1421 0.3902 1.7820 8 8 3.5020 1.3230 2.2276 9 7 5.4892 0.4285 1.7978 10 6 6.1824 1.5943 2.3516 11 6 7.6717 1.3877 2.2513 12 6 8.3572 0.7836 3.2887 13 6 9.7227 0.5897 3.1945 14 6 10.4043 1.0093 2.0674 15 6 9.7196 1.6182 1.0323 16 6 8.3533 1.8070 1.1240 17 6 1.5761 -2.1548 1.2263 18 8 2.2781 -3.0115 0.7323 19 7 0.3809 -2.4848 1.7547 20 6 -0.0223 -3.8910 1.8328 21 1 0.3587 -4.4270 0.9634 22 6 0.5490 -4.5154 3.1075 23 6 -1.5263 -3.9817 1.8595 24 1 -2.1222 -3.0818 1.8217 25 6 -2.1416 -5.2134 1.9312 26 7 -1.4159 -6.3093 1.9768 27 14 -4.0059 -5.3258 1.9636 28 1 -4.5852 -3.9599 1.9015 29 1 -4.4746 -6.1153 0.7964 30 1 -4.4400 -5.9915 3.2180 31 1 -0.3633 0.4206 0.9376 32 1 -0.3633 0.6016 -0.8331 33 1 -0.3633 -1.0224 -0.1045 34 1 1.8934 -0.5138 -0.8900 35 1 3.1300 1.4426 -0.0005 36 1 1.6767 1.9564 -0.8900 37 1 1.6767 1.9564 0.8900 38 1 4.0150 -1.4263 0.9165 39 1 5.9999 -0.3158 1.4425 40 1 5.9002 2.4852 1.7905 41 1 5.9030 1.7201 3.3977 42 1 7.8253 0.4595 4.1709 43 1 10.2577 0.1144 4.0034 44 1 11.4717 0.8619 1.9959 45 1 10.2522 1.9463 0.1520 46 1 7.8185 2.2830 0.3155 47 1 -0.2123 -1.7912 2.0834 48 1 0.2494 -5.5618 3.1654 49 1 1.6369 -4.4498 3.0882 50 1 0.1681 -3.9794 3.9768 51 1 -1.8487 -7.1758 2.0276 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356414493.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:17 Heat of formation + Delta-G solvation = -53.507765 kcal Electronic energy + Delta-G solvation = -30472.209978 eV Core-core repulsion = 26371.042927 eV Total energy + Delta-G solvation = -4101.167051 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.55370 -39.65859 -38.82287 -36.12176 -34.91303 -34.78642 -33.31996 -32.34652 -31.40859 -31.27785 -29.28507 -27.21339 -26.84524 -25.55345 -25.24016 -22.95235 -21.77254 -21.54754 -21.01568 -19.95209 -19.61346 -18.75726 -17.48035 -16.83947 -16.44774 -16.03194 -15.72949 -15.38522 -15.31157 -15.26482 -14.78642 -14.41018 -14.32885 -14.09333 -13.79489 -13.45422 -13.23458 -13.20641 -12.88397 -12.68228 -12.48630 -12.41636 -12.27598 -11.93498 -11.71865 -11.45630 -11.40785 -11.34943 -11.11522 -10.97575 -10.81911 -10.78967 -10.69476 -10.32828 -10.26749 -10.15206 -9.33196 -9.29804 -9.21827 -9.13934 -9.06956 -8.72224 -8.57939 -7.96666 -6.14667 -4.23710 0.85223 1.02161 2.62277 3.16843 3.22848 3.30141 3.31545 3.33929 3.45567 3.99500 4.31313 4.32731 4.37219 4.49024 4.63463 4.75604 4.99850 5.02960 5.07942 5.11024 5.17965 5.24171 5.35981 5.39090 5.51578 5.56339 5.63260 5.67468 5.81728 5.87462 6.05322 6.05693 6.11016 6.13216 6.22090 6.22389 6.32298 6.43202 6.53859 6.59591 6.59895 6.78137 6.89324 6.92875 7.10530 7.38215 7.51440 7.66374 7.86972 8.02272 8.11218 8.56596 8.63469 8.73643 9.01394 9.43669 10.91385 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018105 B = 0.002070 C = 0.001928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.203094 B =13525.393520 C =14519.099983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.098 4.098 3 C -0.131 4.131 4 C 0.150 3.850 5 H 0.103 0.897 6 N -0.725 5.725 7 C 0.708 3.292 8 O -0.588 6.588 9 N -0.745 5.745 10 C 0.182 3.818 11 C -0.108 4.108 12 C -0.099 4.099 13 C -0.123 4.123 14 C -0.114 4.114 15 C -0.123 4.123 16 C -0.100 4.100 17 C 0.503 3.497 18 O -0.554 6.554 19 N -0.700 5.700 20 C 0.263 3.737 21 H 0.051 0.949 22 C -0.147 4.147 23 C -0.532 4.532 24 H 0.063 0.937 25 C 0.066 3.934 26 N -0.883 5.883 27 Si 0.902 3.098 28 H -0.272 1.272 29 H -0.283 1.283 30 H -0.283 1.283 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.050 0.950 36 H 0.045 0.955 37 H 0.065 0.935 38 H 0.405 0.595 39 H 0.397 0.603 40 H 0.074 0.926 41 H 0.074 0.926 42 H 0.125 0.875 43 H 0.123 0.877 44 H 0.122 0.878 45 H 0.123 0.877 46 H 0.124 0.876 47 H 0.391 0.609 48 H 0.091 0.909 49 H 0.012 0.988 50 H 0.027 0.973 51 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.104 16.449 -0.849 25.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.118 4.118 3 C -0.189 4.189 4 C 0.040 3.960 5 H 0.121 0.879 6 N -0.381 5.381 7 C 0.408 3.592 8 O -0.466 6.466 9 N -0.401 5.401 10 C 0.059 3.941 11 C -0.108 4.108 12 C -0.118 4.118 13 C -0.141 4.141 14 C -0.132 4.132 15 C -0.141 4.141 16 C -0.118 4.118 17 C 0.286 3.714 18 O -0.433 6.433 19 N -0.348 5.348 20 C 0.162 3.838 21 H 0.068 0.932 22 C -0.206 4.206 23 C -0.570 4.570 24 H 0.081 0.919 25 C -0.138 4.138 26 N -0.521 5.521 27 Si 0.729 3.271 28 H -0.197 1.197 29 H -0.209 1.209 30 H -0.209 1.209 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.088 0.912 34 H 0.092 0.908 35 H 0.069 0.931 36 H 0.064 0.936 37 H 0.084 0.916 38 H 0.241 0.759 39 H 0.231 0.769 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.143 0.857 43 H 0.141 0.859 44 H 0.140 0.860 45 H 0.141 0.859 46 H 0.142 0.858 47 H 0.224 0.776 48 H 0.110 0.890 49 H 0.031 0.969 50 H 0.046 0.954 51 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 18.952 16.459 -0.733 25.112 hybrid contribution -0.687 -0.596 -0.111 0.916 sum 18.265 15.863 -0.844 24.207 Atomic orbital electron populations 1.21947 0.93979 1.03219 1.02219 1.21417 0.96527 0.96848 0.97048 1.21827 1.00847 0.94752 1.01447 1.20850 0.79920 0.94604 1.00598 0.87874 1.44827 1.06416 1.20803 1.66076 1.15766 0.81561 0.82989 0.78856 1.90926 1.65431 1.36978 1.53285 1.45129 1.04730 1.22472 1.67816 1.19980 0.86171 0.88193 0.99796 1.19936 0.95155 1.00592 0.95134 1.21167 0.94435 0.97661 0.98492 1.21196 0.94443 1.00163 0.98268 1.21235 1.00039 0.98060 0.93878 1.21183 0.94408 0.99563 0.98995 1.21140 0.94428 0.99031 0.97213 1.20325 0.82902 0.89288 0.78853 1.90640 1.55465 1.51000 1.46214 1.46573 1.16797 1.11831 1.59600 1.18793 0.94317 0.75259 0.95479 0.93163 1.22089 0.96156 1.04287 0.98022 1.21238 0.90370 0.93083 1.52347 0.91907 1.24890 0.98714 0.95499 0.94648 1.69910 1.35129 0.97807 1.49259 0.86390 0.84811 0.78219 0.77668 1.19673 1.20903 1.20902 0.92203 0.92177 0.91206 0.90783 0.93061 0.93642 0.91557 0.75920 0.76880 0.90765 0.90750 0.85702 0.85851 0.86017 0.85897 0.85775 0.77573 0.89034 0.96864 0.95357 0.92632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.08 8.32 37.16 0.31 -1.78 16 2 C -0.10 -1.37 2.67 -90.61 -0.24 -1.61 16 3 C -0.13 -1.72 7.69 37.16 0.29 -1.44 16 4 C 0.15 2.31 2.23 -69.08 -0.15 2.16 16 5 H 0.10 1.62 7.58 -51.93 -0.39 1.22 16 6 N -0.73 -10.19 4.93 -59.81 -0.29 -10.48 16 7 C 0.71 9.65 6.84 -86.92 -0.59 9.06 16 8 O -0.59 -9.56 13.45 5.29 0.07 -9.49 16 9 N -0.75 -7.71 5.55 -66.41 -0.37 -8.08 16 10 C 0.18 1.68 5.80 -5.19 -0.03 1.65 16 11 C -0.11 -0.86 5.25 -104.62 -0.55 -1.41 16 12 C -0.10 -0.76 9.70 -39.58 -0.38 -1.14 16 13 C -0.12 -0.85 10.05 -39.58 -0.40 -1.25 16 14 C -0.11 -0.75 10.05 -39.58 -0.40 -1.14 16 15 C -0.12 -0.83 10.05 -39.58 -0.40 -1.23 16 16 C -0.10 -0.73 9.70 -39.58 -0.38 -1.12 16 17 C 0.50 9.65 6.26 -10.99 -0.07 9.58 16 18 O -0.55 -12.40 15.70 5.55 0.09 -12.32 16 19 N -0.70 -14.17 4.19 -54.93 -0.23 -14.40 16 20 C 0.26 6.53 2.60 -69.08 -0.18 6.36 16 21 H 0.05 1.44 7.51 -51.93 -0.39 1.05 16 22 C -0.15 -3.60 9.26 37.16 0.34 -3.26 16 23 C -0.53 -13.81 8.73 -34.44 -0.30 -14.11 16 24 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 25 C 0.07 1.74 5.30 -17.82 -0.09 1.65 16 26 N -0.88 -24.57 11.32 55.43 0.63 -23.94 16 27 Si 0.90 20.46 29.54 -169.99 -5.02 15.44 16 28 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 29 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 30 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.07 1.08 6.85 -51.93 -0.36 0.72 16 34 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 35 H 0.05 0.70 5.82 -51.93 -0.30 0.40 16 36 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.94 7.39 -51.93 -0.38 0.55 16 38 H 0.40 5.52 7.83 -40.82 -0.32 5.20 16 39 H 0.40 3.51 8.48 -40.82 -0.35 3.16 16 40 H 0.07 0.70 8.09 -51.93 -0.42 0.28 16 41 H 0.07 0.73 8.08 -51.93 -0.42 0.31 16 42 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 43 H 0.12 0.64 8.06 -52.49 -0.42 0.22 16 44 H 0.12 0.56 8.06 -52.49 -0.42 0.14 16 45 H 0.12 0.60 8.06 -52.49 -0.42 0.18 16 46 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 47 H 0.39 7.02 8.02 -40.82 -0.33 6.69 16 48 H 0.09 2.44 6.07 -51.93 -0.32 2.12 16 49 H 0.01 0.30 8.14 -51.92 -0.42 -0.13 16 50 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 51 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 413.39 15.07 6.23 6.23 Total: -1.00 -31.13 413.39 -10.30 -41.43 By element: Atomic # 1 Polarization: 22.79 SS G_CDS: -8.17 Total: 14.63 kcal Atomic # 6 Polarization: 4.21 SS G_CDS: -3.24 Total: 0.97 kcal Atomic # 7 Polarization: -56.63 SS G_CDS: -0.27 Total: -56.90 kcal Atomic # 8 Polarization: -21.96 SS G_CDS: 0.16 Total: -21.80 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -31.13 -10.30 -41.43 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356414493.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.076 kcal (2) G-P(sol) polarization free energy of solvation -31.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds