Wall clock time and date at job start Wed Apr 1 2020 04:53:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53008 * 109.46863 * 2 1 4 4 C 1.52998 * 109.47238 * 119.99859 * 2 1 3 5 5 H 1.09003 * 109.47108 * 301.87106 * 4 2 1 6 6 N 1.46503 * 109.47024 * 181.87637 * 4 2 1 7 7 C 1.34778 * 120.00100 * 84.72739 * 6 4 2 8 8 O 1.21591 * 119.99840 * 0.27112 * 7 6 4 9 9 N 1.34772 * 120.00149 * 180.27750 * 7 6 4 10 10 C 1.46503 * 120.00204 * 179.97438 * 9 7 6 11 11 C 1.50695 * 109.46879 * 179.97438 * 10 9 7 12 12 C 1.38240 * 120.00335 * 269.72271 * 11 10 9 13 13 C 1.38236 * 120.00196 * 179.76814 * 12 11 10 14 14 C 1.38237 * 119.99795 * 0.50753 * 13 12 11 15 15 C 1.38235 * 120.00065 * 359.75161 * 14 13 12 16 16 C 1.38236 * 120.00256 * 359.97438 * 15 14 13 17 17 C 1.50695 * 109.47181 * 61.87341 * 4 2 1 18 18 O 1.21285 * 119.99741 * 91.87487 * 17 4 2 19 19 N 1.34777 * 120.00160 * 271.87624 * 17 4 2 20 20 C 1.46499 * 120.00021 * 185.05728 * 19 17 4 21 21 H 1.09002 * 109.46833 * 325.00037 * 20 19 17 22 22 C 1.53001 * 109.47201 * 84.99922 * 20 19 17 23 23 C 1.50701 * 109.47243 * 204.99690 * 20 19 17 24 24 H 1.07999 * 119.99714 * 0.02562 * 23 20 19 25 25 C 1.37869 * 120.00297 * 179.97438 * 23 20 19 26 26 N 1.31516 * 119.99782 * 0.02562 * 25 23 20 27 27 Si 1.86804 * 120.00268 * 180.02562 * 25 23 20 28 28 H 1.48497 * 109.46768 * 0.02562 * 27 25 23 29 29 H 1.48502 * 109.46935 * 120.00208 * 27 25 23 30 30 H 1.48496 * 109.47409 * 240.00322 * 27 25 23 31 31 H 1.08997 * 109.47142 * 294.16053 * 1 2 3 32 32 H 1.08996 * 109.47093 * 54.16344 * 1 2 3 33 33 H 1.08999 * 109.46726 * 174.16308 * 1 2 3 34 34 H 1.08996 * 109.47154 * 240.00259 * 2 1 3 35 35 H 1.08996 * 109.47032 * 180.02562 * 3 2 1 36 36 H 1.08997 * 109.47035 * 299.99751 * 3 2 1 37 37 H 1.08996 * 109.47025 * 60.00180 * 3 2 1 38 38 H 0.96998 * 119.99974 * 264.99641 * 6 4 2 39 39 H 0.97008 * 120.00050 * 359.97438 * 9 7 6 40 40 H 1.08999 * 109.46951 * 299.99454 * 10 9 7 41 41 H 1.09003 * 109.47050 * 59.99786 * 10 9 7 42 42 H 1.08000 * 119.99763 * 0.02562 * 12 11 10 43 43 H 1.07999 * 120.00310 * 180.23410 * 13 12 11 44 44 H 1.07993 * 119.99746 * 179.71909 * 14 13 12 45 45 H 1.08000 * 119.99875 * 179.97438 * 15 14 13 46 46 H 1.07996 * 120.00311 * 179.97438 * 16 15 14 47 47 H 0.97002 * 120.00100 * 5.05288 * 19 17 4 48 48 H 1.09002 * 109.47420 * 180.02562 * 22 20 19 49 49 H 1.09008 * 109.47066 * 300.00025 * 22 20 19 50 50 H 1.08994 * 109.47403 * 59.99697 * 22 20 19 51 51 H 0.96999 * 119.99939 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 1 1.6496 -0.2271 2.1389 6 7 3.5044 -0.6821 1.2720 7 6 4.1421 0.3902 1.7820 8 8 3.5020 1.3230 2.2276 9 7 5.4892 0.4285 1.7978 10 6 6.1824 1.5943 2.3516 11 6 7.6717 1.3877 2.2513 12 6 8.3572 0.7836 3.2887 13 6 9.7227 0.5897 3.1945 14 6 10.4043 1.0093 2.0674 15 6 9.7196 1.6182 1.0323 16 6 8.3533 1.8070 1.1240 17 6 1.5761 -2.1548 1.2263 18 8 2.2781 -3.0115 0.7323 19 7 0.3809 -2.4848 1.7547 20 6 -0.0223 -3.8910 1.8328 21 1 0.3587 -4.4270 0.9634 22 6 0.5490 -4.5154 3.1075 23 6 -1.5263 -3.9817 1.8595 24 1 -2.1222 -3.0818 1.8217 25 6 -2.1416 -5.2134 1.9312 26 7 -1.4159 -6.3093 1.9768 27 14 -4.0059 -5.3258 1.9636 28 1 -4.5852 -3.9599 1.9015 29 1 -4.4746 -6.1153 0.7964 30 1 -4.4400 -5.9915 3.2180 31 1 -0.3633 0.4206 0.9376 32 1 -0.3633 0.6016 -0.8331 33 1 -0.3633 -1.0224 -0.1045 34 1 1.8934 -0.5138 -0.8900 35 1 3.1300 1.4426 -0.0005 36 1 1.6767 1.9564 -0.8900 37 1 1.6767 1.9564 0.8900 38 1 4.0150 -1.4263 0.9165 39 1 5.9999 -0.3158 1.4425 40 1 5.9002 2.4852 1.7905 41 1 5.9030 1.7201 3.3977 42 1 7.8253 0.4595 4.1709 43 1 10.2577 0.1144 4.0034 44 1 11.4717 0.8619 1.9959 45 1 10.2522 1.9463 0.1520 46 1 7.8185 2.2830 0.3155 47 1 -0.2123 -1.7912 2.0834 48 1 0.2494 -5.5618 3.1654 49 1 1.6369 -4.4498 3.0882 50 1 0.1681 -3.9794 3.9768 51 1 -1.8487 -7.1758 2.0276 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356414493.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:16 Heat of formation + Delta-G solvation = -73.409321 kcal Electronic energy + Delta-G solvation = -30473.072974 eV Core-core repulsion = 26371.042927 eV Total energy + Delta-G solvation = -4102.030047 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.75680 -40.58804 -39.93352 -37.38145 -36.68091 -35.77847 -34.57794 -34.11968 -32.13987 -31.79520 -31.11077 -28.41690 -27.89677 -27.33262 -26.44032 -23.47606 -23.34938 -22.33637 -22.03274 -21.43596 -21.09179 -19.97511 -18.80226 -17.92368 -17.56491 -17.21970 -17.05091 -16.96866 -16.22405 -16.13096 -16.00994 -15.77325 -15.61447 -15.12103 -14.99035 -14.49256 -14.41213 -14.26381 -13.90094 -13.83350 -13.66305 -13.54899 -13.45029 -13.40411 -13.02341 -12.95401 -12.88189 -12.74474 -12.48854 -12.27737 -12.12286 -12.00647 -11.96910 -11.91573 -11.82050 -11.29718 -11.08867 -10.82176 -10.59109 -10.28310 -9.87848 -9.82108 -9.78352 -9.74163 -8.17098 -6.33580 0.28122 0.49297 1.44488 1.46141 1.48254 1.57914 1.79238 2.12931 2.36308 2.57516 2.87450 3.13855 3.33717 3.67721 3.75515 3.82846 3.94570 3.95611 4.15237 4.28500 4.29915 4.34824 4.40247 4.59800 4.67856 4.69335 4.74321 4.79069 4.83813 4.90364 4.99631 5.00087 5.06662 5.08485 5.15258 5.15854 5.28526 5.38442 5.40750 5.44806 5.52139 5.54694 5.59479 5.62056 5.65480 5.67460 5.86645 5.93861 6.08476 6.09539 6.73339 6.86511 7.00202 7.30069 7.45630 7.54026 8.89306 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018105 B = 0.002070 C = 0.001928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.203094 B =13525.393520 C =14519.099983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.093 4.093 3 C -0.119 4.119 4 C 0.163 3.837 5 H 0.106 0.894 6 N -0.726 5.726 7 C 0.709 3.291 8 O -0.613 6.613 9 N -0.732 5.732 10 C 0.186 3.814 11 C -0.115 4.115 12 C -0.111 4.111 13 C -0.130 4.130 14 C -0.117 4.117 15 C -0.129 4.129 16 C -0.107 4.107 17 C 0.505 3.495 18 O -0.587 6.587 19 N -0.696 5.696 20 C 0.271 3.729 21 H 0.004 0.996 22 C -0.134 4.134 23 C -0.543 4.543 24 H 0.074 0.926 25 C 0.014 3.986 26 N -0.917 5.917 27 Si 0.970 3.030 28 H -0.260 1.260 29 H -0.284 1.284 30 H -0.280 1.280 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.046 0.954 34 H 0.067 0.933 35 H 0.043 0.957 36 H 0.063 0.937 37 H 0.058 0.942 38 H 0.407 0.593 39 H 0.406 0.594 40 H 0.073 0.927 41 H 0.067 0.933 42 H 0.127 0.873 43 H 0.139 0.861 44 H 0.142 0.858 45 H 0.142 0.858 46 H 0.131 0.869 47 H 0.405 0.595 48 H 0.068 0.932 49 H 0.012 0.988 50 H 0.039 0.961 51 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.329 18.169 -0.952 26.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.113 4.113 3 C -0.176 4.176 4 C 0.053 3.947 5 H 0.124 0.876 6 N -0.382 5.382 7 C 0.409 3.591 8 O -0.493 6.493 9 N -0.388 5.388 10 C 0.063 3.937 11 C -0.116 4.116 12 C -0.129 4.129 13 C -0.148 4.148 14 C -0.135 4.135 15 C -0.147 4.147 16 C -0.126 4.126 17 C 0.290 3.710 18 O -0.469 6.469 19 N -0.345 5.345 20 C 0.168 3.832 21 H 0.022 0.978 22 C -0.193 4.193 23 C -0.581 4.581 24 H 0.092 0.908 25 C -0.186 4.186 26 N -0.555 5.555 27 Si 0.795 3.205 28 H -0.183 1.183 29 H -0.210 1.210 30 H -0.206 1.206 31 H 0.089 0.911 32 H 0.097 0.903 33 H 0.065 0.935 34 H 0.085 0.915 35 H 0.062 0.938 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.243 0.757 39 H 0.241 0.759 40 H 0.091 0.909 41 H 0.086 0.914 42 H 0.145 0.855 43 H 0.157 0.843 44 H 0.160 0.840 45 H 0.159 0.841 46 H 0.149 0.851 47 H 0.240 0.760 48 H 0.087 0.913 49 H 0.031 0.969 50 H 0.058 0.942 51 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 19.209 18.215 -0.833 26.486 hybrid contribution -0.636 -1.129 -0.098 1.300 sum 18.574 17.086 -0.931 25.254 Atomic orbital electron populations 1.21929 0.93327 1.02159 1.03681 1.21395 0.97021 0.97198 0.95701 1.21698 1.00260 0.93787 1.01903 1.20691 0.80875 0.91497 1.01626 0.87601 1.44781 1.05841 1.21191 1.66369 1.15824 0.82367 0.82387 0.78543 1.90908 1.66235 1.37767 1.54426 1.45085 1.03636 1.23089 1.66953 1.19984 0.86998 0.87540 0.99180 1.19828 0.94256 1.01665 0.95833 1.21295 0.95059 0.97962 0.98595 1.21447 0.94239 1.00123 0.99020 1.21553 1.01175 0.97311 0.93508 1.21463 0.94236 0.99228 0.99758 1.21298 0.94996 0.99074 0.97189 1.20935 0.81950 0.90661 0.77438 1.90623 1.56273 1.52531 1.47437 1.46309 1.17648 1.10428 1.60066 1.18386 0.94065 0.77216 0.93581 0.97780 1.21917 0.96029 1.02992 0.98385 1.21549 0.90924 0.93605 1.51993 0.90801 1.25767 1.03355 0.95184 0.94251 1.70049 1.37043 0.98336 1.50081 0.85322 0.79156 0.78600 0.77415 1.18349 1.21040 1.20610 0.91089 0.90324 0.93536 0.91500 0.93807 0.91819 0.92337 0.75691 0.75874 0.90896 0.91446 0.85540 0.84344 0.84010 0.84064 0.85062 0.76000 0.91326 0.96889 0.94204 0.92598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.87 8.32 71.98 0.60 -3.27 16 2 C -0.09 -2.49 2.67 -10.79 -0.03 -2.52 16 3 C -0.12 -2.92 7.69 71.98 0.55 -2.37 16 4 C 0.16 4.94 2.23 44.24 0.10 5.04 16 5 H 0.11 3.21 7.58 -2.39 -0.02 3.20 16 6 N -0.73 -20.09 4.93 -461.41 -2.27 -22.36 16 7 C 0.71 18.85 6.84 179.06 1.22 20.07 16 8 O -0.61 -19.46 13.45 -4.00 -0.05 -19.51 16 9 N -0.73 -14.65 5.55 -482.30 -2.68 -17.33 16 10 C 0.19 3.33 5.80 85.63 0.50 3.82 16 11 C -0.12 -1.75 5.25 -19.86 -0.10 -1.86 16 12 C -0.11 -1.61 9.70 22.27 0.22 -1.39 16 13 C -0.13 -1.62 10.05 22.27 0.22 -1.40 16 14 C -0.12 -1.31 10.05 22.27 0.22 -1.09 16 15 C -0.13 -1.49 10.05 22.27 0.22 -1.27 16 16 C -0.11 -1.44 9.70 22.27 0.22 -1.23 16 17 C 0.50 19.54 6.26 87.66 0.55 20.09 16 18 O -0.59 -26.94 15.70 -3.04 -0.05 -26.99 16 19 N -0.70 -28.30 4.19 -446.09 -1.87 -30.17 16 20 C 0.27 13.74 2.60 44.25 0.12 13.85 16 21 H 0.00 0.26 7.51 -2.39 -0.02 0.24 16 22 C -0.13 -6.71 9.26 71.98 0.67 -6.05 16 23 C -0.54 -28.18 8.73 25.60 0.22 -27.95 16 24 H 0.07 3.59 7.74 -2.91 -0.02 3.57 16 25 C 0.01 0.77 5.30 84.65 0.45 1.22 16 26 N -0.92 -51.88 11.32 21.44 0.24 -51.64 16 27 Si 0.97 41.67 29.54 68.60 2.03 43.69 16 28 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 29 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 30 H -0.28 -11.85 7.11 99.48 0.71 -11.15 16 31 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.05 1.40 6.85 -2.39 -0.02 1.38 16 34 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.04 1.14 5.82 -2.39 -0.01 1.12 16 36 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.06 1.55 7.39 -2.39 -0.02 1.53 16 38 H 0.41 11.05 7.83 -92.71 -0.73 10.33 16 39 H 0.41 6.85 8.48 -92.70 -0.79 6.07 16 40 H 0.07 1.33 8.09 -2.39 -0.02 1.31 16 41 H 0.07 1.31 8.08 -2.39 -0.02 1.29 16 42 H 0.13 1.71 8.06 -2.91 -0.02 1.69 16 43 H 0.14 1.22 8.06 -2.91 -0.02 1.19 16 44 H 0.14 0.96 8.06 -2.91 -0.02 0.93 16 45 H 0.14 1.05 8.06 -2.91 -0.02 1.03 16 46 H 0.13 1.51 8.06 -2.91 -0.02 1.48 16 47 H 0.40 14.25 8.02 -92.71 -0.74 13.51 16 48 H 0.07 3.76 6.07 -2.39 -0.01 3.74 16 49 H 0.01 0.60 8.14 -2.38 -0.02 0.58 16 50 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 51 H 0.26 14.18 8.31 -92.71 -0.77 13.41 16 Total: -1.00 -67.19 413.39 0.00 -67.19 By element: Atomic # 1 Polarization: 44.70 SS G_CDS: -1.30 Total: 43.40 kcal Atomic # 6 Polarization: 7.76 SS G_CDS: 5.95 Total: 13.71 kcal Atomic # 7 Polarization: -114.92 SS G_CDS: -6.58 Total: -121.50 kcal Atomic # 8 Polarization: -46.40 SS G_CDS: -0.10 Total: -46.50 kcal Atomic # 14 Polarization: 41.67 SS G_CDS: 2.03 Total: 43.69 kcal Total: -67.19 0.00 -67.19 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356414493.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.216 kcal (2) G-P(sol) polarization free energy of solvation -67.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds