Wall clock time and date at job start Wed Apr 1 2020 04:54:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47350 * 2 1 4 4 N 1.46906 * 109.46907 * 119.99996 * 2 1 3 5 5 C 1.46853 * 110.99832 * 299.21245 * 4 2 1 6 6 C 1.53033 * 109.52262 * 174.16246 * 5 4 2 7 7 C 1.53112 * 109.27992 * 59.17361 * 6 5 4 8 8 N 1.46501 * 109.52359 * 182.44184 * 7 6 5 9 9 C 1.46499 * 120.00131 * 59.68302 * 8 7 6 10 10 S 1.65602 * 120.00061 * 239.68603 * 8 7 6 11 11 O 1.42103 * 106.40452 * 203.53871 * 10 8 7 12 12 O 1.42101 * 106.40151 * 336.46094 * 10 8 7 13 13 N 1.65606 * 107.21758 * 89.99819 * 10 8 7 14 14 C 1.46502 * 120.00005 * 90.00363 * 13 10 8 15 15 C 1.46500 * 120.00010 * 269.99938 * 13 10 8 16 16 H 1.09000 * 109.47410 * 0.02562 * 15 13 10 17 17 C 1.52996 * 109.46999 * 120.00150 * 15 13 10 18 18 C 1.50701 * 109.46980 * 239.99962 * 15 13 10 19 19 H 1.08000 * 120.00470 * 0.02562 * 18 15 13 20 20 C 1.37879 * 119.99531 * 179.97438 * 18 15 13 21 21 N 1.31514 * 120.00193 * 0.02562 * 20 18 15 22 22 Si 1.86804 * 119.99611 * 179.97438 * 20 18 15 23 23 H 1.48497 * 109.47068 * 60.00414 * 22 20 18 24 24 H 1.48507 * 109.46780 * 180.02562 * 22 20 18 25 25 H 1.48494 * 109.47217 * 300.00347 * 22 20 18 26 26 C 1.53120 * 109.16707 * 302.34582 * 7 6 5 27 27 C 1.46844 * 110.99887 * 175.00122 * 4 2 1 28 28 H 1.08990 * 109.47621 * 300.00357 * 1 2 3 29 29 H 1.09002 * 109.46731 * 60.00078 * 1 2 3 30 30 H 1.09004 * 109.47394 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47175 * 239.99799 * 2 1 3 32 32 H 1.09002 * 109.46922 * 300.00179 * 3 2 1 33 33 H 1.09006 * 109.46822 * 59.99467 * 3 2 1 34 34 H 1.08997 * 109.47474 * 179.97438 * 3 2 1 35 35 H 1.09001 * 109.46125 * 294.17808 * 5 4 2 36 36 H 1.09003 * 109.46462 * 54.14202 * 5 4 2 37 37 H 1.09007 * 109.50330 * 299.23709 * 6 5 4 38 38 H 1.09002 * 109.50417 * 179.12117 * 6 5 4 39 39 H 1.08999 * 109.57341 * 62.28839 * 7 6 5 40 40 H 1.08998 * 109.46751 * 90.00054 * 9 8 7 41 41 H 1.09004 * 109.47430 * 210.00017 * 9 8 7 42 42 H 1.08999 * 109.47259 * 330.00228 * 9 8 7 43 43 H 1.08994 * 109.47451 * 89.99669 * 14 13 10 44 44 H 1.09003 * 109.46831 * 210.00310 * 14 13 10 45 45 H 1.09007 * 109.46708 * 330.00087 * 14 13 10 46 46 H 1.09004 * 109.46997 * 299.99877 * 17 15 13 47 47 H 1.09000 * 109.47007 * 59.99793 * 17 15 13 48 48 H 1.09004 * 109.47246 * 180.02562 * 17 15 13 49 49 H 0.96998 * 119.99905 * 179.97438 * 21 20 18 50 50 H 1.08996 * 109.49890 * 297.71825 * 26 7 6 51 51 H 1.08994 * 109.50831 * 177.59288 * 26 7 6 52 52 H 1.09000 * 109.46299 * 305.85220 * 27 4 2 53 53 H 1.08998 * 109.46010 * 65.83553 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 1.5641 -0.0158 2.4206 6 6 1.9679 -0.8418 3.6440 7 6 3.4903 -1.0032 3.6650 8 7 3.8781 -1.8421 4.8017 9 6 3.3706 -3.2122 4.9077 10 16 4.8901 -1.2415 5.9669 11 8 5.5066 -2.3650 6.5809 12 8 5.6245 -0.1889 5.3568 13 7 3.9398 -0.5377 7.1262 14 6 3.4596 -1.3310 8.2605 15 6 3.5794 0.8781 7.0177 16 1 4.0246 1.2983 6.1159 17 6 2.0571 1.0126 6.9447 18 6 4.0920 1.6208 8.2246 19 1 4.6326 1.0914 8.9952 20 6 3.8717 2.9766 8.3445 21 7 3.2139 3.6215 7.4059 22 14 4.5065 3.8972 9.8408 23 1 5.9840 3.7661 9.9127 24 1 4.1412 5.3324 9.7307 25 1 3.8985 3.3250 11.0688 26 6 3.9436 -1.6665 2.3615 27 6 3.4826 -0.8164 1.1752 28 1 -0.3634 0.5138 0.8898 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 3.1300 1.4425 0.0005 35 1 2.0227 0.9712 2.4814 36 1 0.4794 0.0889 2.3949 37 1 1.4986 -1.8242 3.5908 38 1 1.6434 -0.3315 4.5509 39 1 3.9601 -0.0240 3.7580 40 1 4.0567 -3.8937 4.4049 41 1 3.2888 -3.4891 5.9588 42 1 2.3887 -3.2734 4.4384 43 1 4.1807 -1.2729 9.0757 44 1 2.4991 -0.9403 8.5964 45 1 3.3418 -2.3702 7.9530 46 1 1.6863 0.4753 6.0718 47 1 1.6116 0.5923 7.8464 48 1 1.7889 2.0660 6.8635 49 1 3.0586 4.5752 7.4904 50 1 3.5053 -2.6617 2.2882 51 1 5.0307 -1.7452 2.3520 52 1 3.7913 -1.2934 0.2450 53 1 3.9321 0.1743 1.2421 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000407973776.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:54:17 Heat of formation + Delta-G solvation = -89.589528 kcal Electronic energy + Delta-G solvation = -31994.272036 eV Core-core repulsion = 28026.984314 eV Total energy + Delta-G solvation = -3967.287722 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.203 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.66233 -38.41306 -37.91860 -37.78795 -36.90383 -34.53972 -34.28046 -31.91978 -30.93153 -30.49803 -28.07861 -27.51069 -27.28899 -26.90929 -24.70404 -24.02335 -22.52711 -21.41758 -20.07016 -19.90503 -18.85043 -18.60513 -18.17261 -17.51870 -16.97481 -16.63247 -16.06759 -15.82432 -15.46153 -15.27783 -15.18371 -15.00386 -14.80490 -14.77094 -14.40805 -14.11971 -13.77761 -13.70967 -13.63978 -13.43481 -13.34881 -13.31828 -13.06146 -12.99662 -12.85320 -12.79265 -12.63170 -12.61288 -12.53334 -12.27888 -12.23143 -12.16301 -12.06401 -11.94528 -11.87238 -11.76638 -11.37986 -11.28267 -11.07629 -10.51096 -9.96511 -9.64013 -9.20769 -8.12811 -6.26402 -0.38151 1.40912 1.42844 1.49801 1.99766 2.40955 2.55321 2.95512 3.15110 3.33069 3.63704 3.82964 3.95985 4.02632 4.05908 4.17368 4.23810 4.32840 4.41032 4.42401 4.52889 4.59247 4.64730 4.68032 4.69807 4.76911 4.78178 4.80838 4.86845 4.89935 4.95797 4.97208 4.99284 5.06314 5.07439 5.13069 5.14080 5.16533 5.19931 5.33032 5.38214 5.44562 5.48575 5.58715 5.62189 5.82735 5.88236 6.14620 6.17369 6.23124 6.30166 6.80546 7.42423 8.90776 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011413 B = 0.004113 C = 0.003367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2452.781731 B = 6806.569134 C = 8313.225040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.075 3.925 3 C -0.188 4.188 4 N -0.527 5.527 5 C 0.054 3.946 6 C -0.122 4.122 7 C 0.147 3.853 8 N -0.999 5.999 9 C 0.088 3.912 10 S 2.785 3.215 11 O -1.007 7.007 12 O -1.017 7.017 13 N -0.998 5.998 14 C 0.105 3.895 15 C 0.277 3.723 16 H 0.020 0.980 17 C -0.135 4.135 18 C -0.542 4.542 19 H 0.053 0.947 20 C 0.021 3.979 21 N -0.912 5.912 22 Si 0.952 3.048 23 H -0.281 1.281 24 H -0.280 1.280 25 H -0.266 1.266 26 C -0.115 4.115 27 C 0.056 3.944 28 H 0.051 0.949 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.093 0.907 32 H 0.073 0.927 33 H 0.046 0.954 34 H 0.048 0.952 35 H 0.021 0.979 36 H 0.093 0.907 37 H 0.094 0.906 38 H 0.065 0.935 39 H 0.060 0.940 40 H 0.065 0.935 41 H 0.070 0.930 42 H 0.098 0.902 43 H 0.038 0.962 44 H 0.079 0.921 45 H 0.079 0.921 46 H 0.042 0.958 47 H 0.041 0.959 48 H 0.065 0.935 49 H 0.264 0.736 50 H 0.094 0.906 51 H 0.062 0.938 52 H 0.096 0.904 53 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.032 -11.679 -13.839 19.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.033 4.033 3 C -0.247 4.247 4 N -0.252 5.252 5 C -0.074 4.074 6 C -0.161 4.161 7 C 0.040 3.960 8 N -0.839 5.839 9 C -0.056 4.056 10 S 2.796 3.204 11 O -0.991 6.991 12 O -1.001 7.001 13 N -0.840 5.840 14 C -0.041 4.041 15 C 0.173 3.827 16 H 0.038 0.962 17 C -0.194 4.194 18 C -0.581 4.581 19 H 0.071 0.929 20 C -0.179 4.179 21 N -0.551 5.551 22 Si 0.778 3.222 23 H -0.206 1.206 24 H -0.205 1.205 25 H -0.191 1.191 26 C -0.154 4.154 27 C -0.072 4.072 28 H 0.070 0.930 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.111 0.889 32 H 0.092 0.908 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.039 0.961 36 H 0.111 0.889 37 H 0.113 0.887 38 H 0.084 0.916 39 H 0.079 0.921 40 H 0.083 0.917 41 H 0.089 0.911 42 H 0.117 0.883 43 H 0.057 0.943 44 H 0.097 0.903 45 H 0.098 0.902 46 H 0.060 0.940 47 H 0.060 0.940 48 H 0.084 0.916 49 H 0.074 0.926 50 H 0.112 0.888 51 H 0.081 0.919 52 H 0.114 0.886 53 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -7.328 -12.067 -13.846 19.774 hybrid contribution 0.727 1.944 1.057 2.330 sum -6.600 -10.122 -12.789 17.595 Atomic orbital electron populations 1.21845 0.93397 1.02569 1.02056 1.21782 0.96488 0.92007 0.92986 1.22491 1.01100 0.98632 1.02478 1.62288 1.10190 1.50765 1.01928 1.22099 1.01292 0.94762 0.89283 1.22007 0.93974 1.02284 0.97817 1.20979 0.96378 0.92819 0.85780 1.57828 1.67020 1.22611 1.36471 1.21667 1.01369 0.79735 1.02863 1.01571 0.74089 0.71811 0.72901 1.93499 1.75039 1.53425 1.77155 1.93522 1.70718 1.58182 1.77660 1.57674 1.69983 1.19644 1.36671 1.21339 1.00457 0.93842 0.88454 1.18342 0.93405 0.75001 0.95958 0.96247 1.21974 0.96382 1.02270 0.98768 1.21634 1.35997 0.93830 1.06670 0.92862 1.25593 0.95234 0.98126 0.98981 1.69959 1.41198 1.09432 1.34469 0.85710 0.78548 0.77697 0.80289 1.20645 1.20511 1.19072 1.21879 1.00580 1.00809 0.92177 1.22079 0.87811 0.98308 0.99022 0.93044 0.91122 0.91628 0.88895 0.90819 0.93501 0.93305 0.96071 0.88860 0.88738 0.91617 0.92139 0.91684 0.91130 0.88325 0.94298 0.90262 0.90222 0.93971 0.93982 0.91584 0.92628 0.88786 0.91904 0.88577 0.95759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.02 8.99 71.98 0.65 -1.38 16 2 C 0.08 1.25 2.96 44.91 0.13 1.39 16 3 C -0.19 -3.47 8.50 71.98 0.61 -2.85 16 4 N -0.53 -10.49 4.64 -871.10 -4.04 -14.53 16 5 C 0.05 1.25 4.63 86.32 0.40 1.65 16 6 C -0.12 -3.01 5.40 30.64 0.17 -2.84 16 7 C 0.15 4.24 2.58 45.07 0.12 4.36 16 8 N -1.00 -30.01 3.14 -516.11 -1.62 -31.63 16 9 C 0.09 1.90 9.31 127.77 1.19 3.09 16 10 S 2.78 113.26 6.01 -56.49 -0.34 112.93 16 11 O -1.01 -42.35 16.28 -128.00 -2.08 -44.44 16 12 O -1.02 -50.15 15.27 -128.00 -1.95 -52.11 16 13 N -1.00 -41.91 3.12 -520.44 -1.62 -43.53 16 14 C 0.10 3.65 9.53 127.77 1.22 4.87 16 15 C 0.28 13.74 2.62 44.24 0.12 13.85 16 16 H 0.02 1.11 6.91 -2.39 -0.02 1.10 16 17 C -0.13 -5.96 8.95 71.98 0.64 -5.31 16 18 C -0.54 -29.79 8.37 25.60 0.21 -29.58 16 19 H 0.05 2.93 7.65 -2.91 -0.02 2.91 16 20 C 0.02 1.14 5.30 84.66 0.45 1.59 16 21 N -0.91 -51.25 11.32 21.45 0.24 -51.01 16 22 Si 0.95 43.66 29.54 68.60 2.03 45.68 16 23 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 24 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 25 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 26 C -0.11 -2.66 5.41 30.65 0.17 -2.50 16 27 C 0.06 1.19 5.02 86.33 0.43 1.62 16 28 H 0.05 0.81 6.30 -2.39 -0.02 0.80 16 29 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.09 1.34 8.08 -2.39 -0.02 1.32 16 32 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.05 1.00 6.52 -2.38 -0.02 0.99 16 34 H 0.05 0.98 6.65 -2.39 -0.02 0.96 16 35 H 0.02 0.58 6.62 -2.39 -0.02 0.56 16 36 H 0.09 1.91 6.03 -2.39 -0.01 1.90 16 37 H 0.09 1.94 6.57 -2.38 -0.02 1.92 16 38 H 0.07 1.85 5.59 -2.39 -0.01 1.84 16 39 H 0.06 2.22 6.92 -2.39 -0.02 2.20 16 40 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.07 1.49 7.37 -2.38 -0.02 1.47 16 42 H 0.10 1.61 6.37 -2.39 -0.02 1.60 16 43 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 44 H 0.08 2.63 6.43 -2.39 -0.02 2.61 16 45 H 0.08 2.23 7.37 -2.38 -0.02 2.21 16 46 H 0.04 1.59 5.59 -2.39 -0.01 1.58 16 47 H 0.04 1.74 6.66 -2.39 -0.02 1.73 16 48 H 0.07 3.29 6.07 -2.38 -0.01 3.28 16 49 H 0.26 14.16 8.31 -92.71 -0.77 13.39 16 50 H 0.09 1.84 7.60 -2.39 -0.02 1.82 16 51 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 52 H 0.10 1.63 8.08 -2.39 -0.02 1.61 16 53 H 0.02 0.59 6.73 -2.39 -0.02 0.58 16 Total: -1.00 -68.34 397.47 -2.00 -70.34 By element: Atomic # 1 Polarization: 19.46 SS G_CDS: 0.89 Total: 20.35 kcal Atomic # 6 Polarization: -18.55 SS G_CDS: 6.50 Total: -12.05 kcal Atomic # 7 Polarization: -133.66 SS G_CDS: -7.04 Total: -140.70 kcal Atomic # 8 Polarization: -92.51 SS G_CDS: -4.04 Total: -96.55 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.68 kcal Atomic # 16 Polarization: 113.26 SS G_CDS: -0.34 Total: 112.93 kcal Total: -68.34 -2.00 -70.34 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000407973776.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.252 kcal (2) G-P(sol) polarization free energy of solvation -68.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds