Wall clock time and date at job start Wed Apr 1 2020 04:53:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46497 * 109.47145 * 240.00568 * 2 1 3 13 13 C 1.46503 * 119.99817 * 300.00252 * 12 2 1 14 14 S 1.65597 * 120.00227 * 119.99787 * 12 2 1 15 15 O 1.42100 * 106.40587 * 203.53991 * 14 12 2 16 16 O 1.42101 * 106.40301 * 336.46074 * 14 12 2 17 17 N 1.65598 * 107.21541 * 89.99985 * 14 12 2 18 18 C 1.46501 * 120.00034 * 65.00515 * 17 14 12 19 19 C 1.53125 * 109.51839 * 264.68117 * 18 17 14 20 20 C 1.53038 * 109.27567 * 182.44022 * 19 18 17 21 21 N 1.46851 * 109.52431 * 59.18066 * 20 19 18 22 22 C 1.46896 * 111.00171 * 174.16154 * 21 20 19 23 23 C 1.52997 * 109.47309 * 184.20892 * 22 21 20 24 24 C 1.53003 * 109.47196 * 304.20811 * 22 21 20 25 25 C 1.53001 * 109.47571 * 64.20724 * 22 21 20 26 26 C 1.46849 * 111.19657 * 298.25572 * 21 20 19 27 27 C 1.53034 * 109.52117 * 61.74180 * 26 21 20 28 28 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 29 29 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 30 30 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 31 31 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 32 32 H 1.08994 * 109.47665 * 90.00431 * 13 12 2 33 33 H 1.09008 * 109.46786 * 210.00039 * 13 12 2 34 34 H 1.08997 * 109.47360 * 329.99480 * 13 12 2 35 35 H 0.96998 * 120.00285 * 244.99932 * 17 14 12 36 36 H 1.08998 * 109.52695 * 24.86655 * 18 17 14 37 37 H 1.08997 * 109.50108 * 302.37779 * 19 18 17 38 38 H 1.08992 * 109.50496 * 62.49769 * 19 18 17 39 39 H 1.09001 * 109.46317 * 299.16371 * 20 19 18 40 40 H 1.09002 * 109.46604 * 179.19462 * 20 19 18 41 41 H 1.08993 * 109.47158 * 59.99677 * 23 22 21 42 42 H 1.08997 * 109.47301 * 179.97438 * 23 22 21 43 43 H 1.08999 * 109.46964 * 299.99576 * 23 22 21 44 44 H 1.09006 * 109.47168 * 59.99901 * 24 22 21 45 45 H 1.08997 * 109.47508 * 180.02562 * 24 22 21 46 46 H 1.09000 * 109.47143 * 300.00325 * 24 22 21 47 47 H 1.09005 * 109.47077 * 59.99701 * 25 22 21 48 48 H 1.08998 * 109.47626 * 180.02562 * 25 22 21 49 49 H 1.09009 * 109.46809 * 300.00667 * 25 22 21 50 50 H 1.09002 * 109.46350 * 301.72701 * 26 21 20 51 51 H 1.08994 * 109.46280 * 181.75776 * 26 21 20 52 52 H 1.09006 * 109.50039 * 180.87998 * 27 26 21 53 53 H 1.09000 * 109.50305 * 60.76740 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.3427 -2.1620 4.4117 10 1 3.6293 -1.7586 3.7120 11 1 2.4865 -0.1417 5.1122 12 7 2.0183 -0.6905 -1.1962 13 6 1.6643 -2.0930 -1.4282 14 16 2.9703 0.1144 -2.2862 15 8 2.8227 -0.5643 -3.5260 16 8 2.6903 1.4975 -2.1192 17 7 4.5436 -0.1041 -1.8180 18 6 5.1357 -1.4439 -1.8417 19 6 5.0253 -2.0766 -0.4516 20 6 5.6992 -3.4506 -0.4670 21 7 7.1101 -3.3010 -0.8458 22 6 7.8230 -4.5808 -0.7371 23 6 9.3076 -4.3648 -1.0371 24 6 7.6645 -5.1340 0.6806 25 6 7.2394 -5.5767 -1.7413 26 6 7.2406 -2.7391 -2.1962 27 6 6.6128 -1.3439 -2.2325 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 0.7089 1.1611 3.4845 32 1 0.7376 -2.1442 -1.9996 33 1 2.4629 -2.5817 -1.9866 34 1 1.5295 -2.5968 -0.4711 35 1 5.0733 0.6551 -1.5281 36 1 4.6079 -2.0626 -2.5674 37 1 5.5196 -1.4370 0.2796 38 1 3.9744 -2.1897 -0.1856 39 1 5.1957 -4.0940 -1.1885 40 1 5.6350 -3.8978 0.5250 41 1 9.7234 -3.6554 -0.3217 42 1 9.8366 -5.3143 -0.9560 43 1 9.4205 -3.9707 -2.0471 44 1 6.6067 -5.2879 0.8945 45 1 8.1938 -6.0834 0.7615 46 1 8.0802 -4.4246 1.3961 47 1 7.3522 -5.1826 -2.7513 48 1 7.7680 -6.5265 -1.6603 49 1 6.1816 -5.7306 -1.5275 50 1 6.7299 -3.3858 -2.9097 51 1 8.2958 -2.6694 -2.4602 52 1 6.6959 -0.9335 -3.2389 53 1 7.1321 -0.6928 -1.5293 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000407977295.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:59 Heat of formation + Delta-G solvation = -98.684378 kcal Electronic energy + Delta-G solvation = -31940.990965 eV Core-core repulsion = 27973.308861 eV Total energy + Delta-G solvation = -3967.682104 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.203 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.84210 -38.37504 -37.99135 -37.54048 -36.90367 -34.46781 -34.10930 -32.02929 -30.89746 -30.18172 -28.18925 -28.15230 -27.22279 -26.97829 -24.55013 -23.69433 -22.59117 -21.30604 -20.37663 -19.64808 -18.73287 -18.34920 -18.23847 -17.54341 -17.05907 -16.57084 -15.99023 -15.80794 -15.35454 -15.18073 -15.09841 -14.97470 -14.76845 -14.70000 -14.46237 -14.13950 -13.71226 -13.55951 -13.43090 -13.39451 -13.22299 -13.14917 -12.97800 -12.84236 -12.73193 -12.70092 -12.63169 -12.57766 -12.53995 -12.24856 -12.21342 -12.08703 -12.02947 -11.91038 -11.79769 -11.76419 -11.42092 -11.19889 -11.05945 -10.45703 -10.29779 -9.62344 -9.09976 -8.04723 -6.17907 -0.27042 1.46615 1.49365 1.57274 2.01277 2.48575 2.63842 2.95831 3.24688 3.44283 3.74499 3.85494 3.97810 4.03297 4.09234 4.12679 4.30040 4.36334 4.37779 4.45406 4.52655 4.67732 4.71602 4.76991 4.78758 4.80325 4.87377 4.89865 4.95698 4.98401 5.00849 5.04652 5.05266 5.09288 5.10447 5.16942 5.20486 5.27522 5.27938 5.36736 5.43309 5.49770 5.56637 5.65565 5.73706 5.88674 6.09386 6.20678 6.26898 6.33113 6.34264 6.92001 7.51324 9.00128 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010246 B = 0.004557 C = 0.003497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2732.145617 B = 6142.959432 C = 8004.647411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.276 3.724 3 H 0.023 0.977 4 C -0.519 4.519 5 H 0.077 0.923 6 C 0.017 3.983 7 N -0.920 5.920 8 Si 0.952 3.048 9 H -0.278 1.278 10 H -0.263 1.263 11 H -0.294 1.294 12 N -0.994 5.994 13 C 0.100 3.900 14 S 2.796 3.204 15 O -1.009 7.009 16 O -1.021 7.021 17 N -1.113 6.113 18 C 0.152 3.848 19 C -0.136 4.136 20 C 0.059 3.941 21 N -0.534 5.534 22 C 0.099 3.901 23 C -0.135 4.135 24 C -0.141 4.141 25 C -0.178 4.178 26 C 0.055 3.945 27 C -0.114 4.114 28 H 0.069 0.931 29 H 0.016 0.984 30 H 0.044 0.956 31 H 0.261 0.739 32 H 0.050 0.950 33 H 0.070 0.930 34 H 0.080 0.920 35 H 0.420 0.580 36 H 0.081 0.919 37 H 0.063 0.937 38 H 0.073 0.927 39 H 0.041 0.959 40 H 0.080 0.920 41 H 0.056 0.944 42 H 0.069 0.931 43 H 0.061 0.939 44 H 0.052 0.948 45 H 0.071 0.929 46 H 0.054 0.946 47 H 0.059 0.941 48 H 0.070 0.930 49 H 0.050 0.950 50 H 0.041 0.959 51 H 0.096 0.904 52 H 0.081 0.919 53 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.126 -13.131 -7.476 21.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.172 3.828 3 H 0.040 0.960 4 C -0.558 4.558 5 H 0.095 0.905 6 C -0.182 4.182 7 N -0.560 5.560 8 Si 0.778 3.222 9 H -0.204 1.204 10 H -0.187 1.187 11 H -0.220 1.220 12 N -0.835 5.835 13 C -0.046 4.046 14 S 2.805 3.195 15 O -0.992 6.992 16 O -1.006 7.006 17 N -0.873 5.873 18 C 0.046 3.954 19 C -0.176 4.176 20 C -0.070 4.070 21 N -0.259 5.259 22 C 0.010 3.990 23 C -0.193 4.193 24 C -0.199 4.199 25 C -0.237 4.237 26 C -0.073 4.073 27 C -0.153 4.153 28 H 0.087 0.913 29 H 0.035 0.965 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.089 0.911 34 H 0.099 0.901 35 H 0.254 0.746 36 H 0.099 0.901 37 H 0.082 0.918 38 H 0.092 0.908 39 H 0.059 0.941 40 H 0.098 0.902 41 H 0.075 0.925 42 H 0.088 0.912 43 H 0.080 0.920 44 H 0.071 0.929 45 H 0.090 0.910 46 H 0.073 0.927 47 H 0.078 0.922 48 H 0.089 0.911 49 H 0.069 0.931 50 H 0.059 0.941 51 H 0.114 0.886 52 H 0.100 0.900 53 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 14.844 -12.343 -7.866 20.846 hybrid contribution -0.326 -0.263 1.010 1.094 sum 14.518 -12.606 -6.856 20.413 Atomic orbital electron populations 1.21951 0.98135 1.00026 0.99780 1.18366 0.91705 0.91348 0.81431 0.95967 1.21658 1.31011 1.12967 0.90155 0.90462 1.25636 0.95352 0.95567 1.01690 1.70026 1.37788 1.24122 1.24045 0.85645 0.79102 0.78134 0.79269 1.20375 1.18692 1.22035 1.57552 1.65239 1.22263 1.38484 1.21397 1.00209 0.80674 1.02272 1.01191 0.73265 0.71950 0.73102 1.93518 1.86642 1.76356 1.42721 1.93536 1.84705 1.34996 1.87321 1.55794 1.30733 1.16079 1.84706 1.20941 0.96006 0.81468 0.97028 1.22197 1.01588 0.96772 0.97035 1.22074 0.87957 0.95765 1.01189 1.62185 1.12004 1.25706 1.26033 1.21140 0.94828 0.87466 0.95593 1.21866 0.93338 1.02235 1.01853 1.21932 1.01795 1.00950 0.95218 1.22469 1.01231 1.00320 0.99691 1.22156 1.01798 0.94114 0.89232 1.21850 0.92740 0.98190 1.02569 0.91258 0.96526 0.93691 0.93000 0.93145 0.91123 0.90141 0.74556 0.90131 0.91775 0.90842 0.94094 0.90222 0.92519 0.91169 0.92023 0.92925 0.90979 0.92691 0.92202 0.91082 0.93055 0.94126 0.88582 0.90023 0.90455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.64 8.97 71.98 0.65 -5.99 16 2 C 0.28 13.27 2.62 44.24 0.12 13.39 16 3 H 0.02 1.24 6.91 -2.39 -0.02 1.22 16 4 C -0.52 -25.36 7.99 25.60 0.20 -25.16 16 5 H 0.08 3.54 5.67 -2.91 -0.02 3.52 16 6 C 0.02 0.87 5.30 84.66 0.45 1.32 16 7 N -0.92 -50.83 11.32 21.45 0.24 -50.59 16 8 Si 0.95 40.92 29.54 68.60 2.03 42.94 16 9 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 10 H -0.26 -10.75 7.11 99.48 0.71 -10.05 16 11 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 12 N -0.99 -39.66 2.86 -520.45 -1.49 -41.15 16 13 C 0.10 3.31 8.14 127.77 1.04 4.35 16 14 S 2.80 108.36 6.07 -56.49 -0.34 108.02 16 15 O -1.01 -40.24 16.55 -128.00 -2.12 -42.36 16 16 O -1.02 -47.65 16.70 -128.00 -2.14 -49.79 16 17 N -1.11 -34.17 5.53 -169.05 -0.94 -35.10 16 18 C 0.15 3.98 2.88 45.07 0.13 4.11 16 19 C -0.14 -3.76 5.70 30.65 0.17 -3.58 16 20 C 0.06 1.32 4.67 86.33 0.40 1.73 16 21 N -0.53 -10.55 4.47 -846.84 -3.79 -14.34 16 22 C 0.10 1.59 0.71 3.53 0.00 1.59 16 23 C -0.14 -1.82 8.25 71.98 0.59 -1.23 16 24 C -0.14 -2.32 8.12 71.98 0.58 -1.73 16 25 C -0.18 -2.60 7.79 71.98 0.56 -2.04 16 26 C 0.06 0.99 4.64 86.32 0.40 1.39 16 27 C -0.11 -2.35 5.63 30.65 0.17 -2.18 16 28 H 0.07 3.64 6.07 -2.39 -0.01 3.63 16 29 H 0.02 0.72 8.14 -2.38 -0.02 0.70 16 30 H 0.04 1.97 7.67 -2.39 -0.02 1.95 16 31 H 0.26 13.86 8.31 -92.71 -0.77 13.09 16 32 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.07 1.99 7.34 -2.38 -0.02 1.97 16 34 H 0.08 2.66 7.02 -2.39 -0.02 2.64 16 35 H 0.42 11.76 8.84 -96.75 -0.86 10.90 16 36 H 0.08 2.13 7.06 -2.39 -0.02 2.11 16 37 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 38 H 0.07 2.30 5.02 -2.39 -0.01 2.29 16 39 H 0.04 0.87 6.71 -2.39 -0.02 0.86 16 40 H 0.08 1.84 5.90 -2.39 -0.01 1.83 16 41 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 42 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 43 H 0.06 0.76 6.28 -2.39 -0.01 0.75 16 44 H 0.05 0.93 6.22 -2.38 -0.01 0.92 16 45 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 46 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 47 H 0.06 0.85 6.54 -2.38 -0.02 0.84 16 48 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 49 H 0.05 0.83 6.63 -2.38 -0.02 0.82 16 50 H 0.04 0.71 6.63 -2.39 -0.02 0.70 16 51 H 0.10 1.43 6.01 -2.39 -0.01 1.41 16 52 H 0.08 1.53 8.14 -2.38 -0.02 1.51 16 53 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 Total: -1.00 -63.53 398.03 -3.02 -66.55 By element: Atomic # 1 Polarization: 29.80 SS G_CDS: 0.05 Total: 29.85 kcal Atomic # 6 Polarization: -19.51 SS G_CDS: 5.48 Total: -14.03 kcal Atomic # 7 Polarization: -135.21 SS G_CDS: -5.97 Total: -141.19 kcal Atomic # 8 Polarization: -87.89 SS G_CDS: -4.26 Total: -92.14 kcal Atomic # 14 Polarization: 40.92 SS G_CDS: 2.03 Total: 42.94 kcal Atomic # 16 Polarization: 108.36 SS G_CDS: -0.34 Total: 108.02 kcal Total: -63.53 -3.02 -66.55 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000407977295.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.134 kcal (2) G-P(sol) polarization free energy of solvation -63.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds