Wall clock time and date at job start Wed Apr 1 2020 04:54:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08993 * 109.47163 * 2 1 4 4 C 1.50698 * 109.47098 * 239.99546 * 2 1 3 5 5 H 1.08000 * 120.00291 * 240.00485 * 4 2 1 6 6 C 1.37882 * 119.99815 * 60.00089 * 4 2 1 7 7 N 1.31515 * 119.99792 * 179.97438 * 6 4 2 8 8 Si 1.86800 * 119.99781 * 0.02562 * 6 4 2 9 9 H 1.48499 * 109.46915 * 269.99611 * 8 6 4 10 10 H 1.48497 * 109.47176 * 29.99809 * 8 6 4 11 11 H 1.48498 * 109.46953 * 149.99753 * 8 6 4 12 12 N 1.46510 * 109.46861 * 119.99973 * 2 1 3 13 13 C 1.46494 * 120.00018 * 59.99894 * 12 2 1 14 14 S 1.65598 * 119.99739 * 240.00012 * 12 2 1 15 15 O 1.42101 * 106.40199 * 201.49570 * 14 12 2 16 16 O 1.42104 * 106.40209 * 334.41382 * 14 12 2 17 17 N 1.65596 * 107.22151 * 87.95240 * 14 12 2 18 18 C 1.46497 * 120.00120 * 267.86780 * 17 14 12 19 19 C 1.46504 * 119.99817 * 87.86284 * 17 14 12 20 20 C 1.53001 * 109.47170 * 248.71283 * 19 17 14 21 21 C 1.53004 * 109.47141 * 8.71607 * 19 17 14 22 22 C 1.53000 * 109.46971 * 128.71323 * 19 17 14 23 23 N 1.46900 * 109.47221 * 292.93354 * 22 19 17 24 24 C 1.48528 * 111.00281 * 61.46806 * 23 22 19 25 25 C 1.54935 * 103.22748 * 159.72366 * 24 23 22 26 26 C 1.54591 * 102.92088 * 322.58241 * 25 24 23 27 27 C 1.47904 * 111.00078 * 178.86624 * 23 22 19 28 28 H 1.09000 * 109.47199 * 300.00272 * 1 2 3 29 29 H 1.08998 * 109.47161 * 60.00053 * 1 2 3 30 30 H 1.09002 * 109.47567 * 180.02562 * 1 2 3 31 31 H 0.96997 * 119.99493 * 179.97438 * 7 6 4 32 32 H 1.08995 * 109.47178 * 95.66565 * 13 12 2 33 33 H 1.09005 * 109.46998 * 215.66615 * 13 12 2 34 34 H 1.09004 * 109.47414 * 335.66823 * 13 12 2 35 35 H 1.09005 * 109.47059 * 89.99699 * 18 17 14 36 36 H 1.09007 * 109.47183 * 209.99502 * 18 17 14 37 37 H 1.08996 * 109.47128 * 329.99903 * 18 17 14 38 38 H 1.08997 * 109.46868 * 64.52714 * 20 19 17 39 39 H 1.09005 * 109.47002 * 184.52577 * 20 19 17 40 40 H 1.09000 * 109.47557 * 304.52417 * 20 19 17 41 41 H 1.08996 * 109.46903 * 68.74905 * 21 19 17 42 42 H 1.08997 * 109.47186 * 188.74898 * 21 19 17 43 43 H 1.08999 * 109.46742 * 308.74680 * 21 19 17 44 44 H 1.09008 * 109.46925 * 52.92936 * 22 19 17 45 45 H 1.08994 * 109.47298 * 172.92876 * 22 19 17 46 46 H 1.09004 * 110.66741 * 278.16060 * 24 23 22 47 47 H 1.08999 * 110.67052 * 41.28692 * 24 23 22 48 48 H 1.09003 * 110.72509 * 204.22868 * 25 24 23 49 49 H 1.09000 * 110.72361 * 80.94588 * 25 24 23 50 50 H 1.08998 * 110.31304 * 263.03913 * 26 25 24 51 51 H 1.09006 * 110.39474 * 140.91777 * 26 25 24 52 52 H 1.09001 * 109.91405 * 333.50709 * 27 23 22 53 53 H 1.09002 * 109.91770 * 94.60002 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 2.1380 -0.8592 -3.5565 8 14 0.6259 1.2797 -2.6541 9 1 -0.8020 0.8744 -2.6993 10 1 0.8492 2.1772 -1.4923 11 1 0.9772 1.9952 -3.9070 12 7 2.0183 -0.6907 1.1963 13 6 1.6643 -2.0932 1.4281 14 16 2.9703 0.1142 2.2863 15 8 3.6760 -0.8813 3.0145 16 8 3.6166 1.1535 1.5641 17 7 1.9585 0.8554 3.3675 18 6 1.5182 2.2328 3.1330 19 6 1.5036 0.1336 4.5585 20 6 0.0057 -0.1543 4.4393 21 6 2.2687 -1.1860 4.6784 22 6 1.7615 0.9874 5.8017 23 7 3.2092 1.1224 6.0113 24 6 3.8526 1.8045 4.8594 25 6 5.1877 2.3197 5.4530 26 6 4.7875 2.7483 6.8834 27 6 3.4975 1.9659 7.1916 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.9033 -0.5281 -4.4375 32 1 2.4647 -2.7354 1.0607 33 1 1.5251 -2.2610 2.4961 34 1 0.7398 -2.3267 0.9000 35 1 0.5955 2.2255 2.5528 36 1 1.3422 2.7258 4.0892 37 1 2.2892 2.7720 2.5827 38 1 -0.1691 -0.8281 3.6006 39 1 -0.3492 -0.6193 5.3591 40 1 -0.5318 0.7794 4.2734 41 1 3.3119 -0.9805 4.9183 42 1 1.8265 -1.7918 5.4693 43 1 2.2127 -1.7255 3.7330 44 1 1.3210 1.9747 5.6622 45 1 1.3116 0.5083 6.6712 46 1 4.0384 1.0990 4.0495 47 1 3.2391 2.6363 4.5132 48 1 5.5590 3.1724 4.8846 49 1 5.9299 1.5219 5.4828 50 1 4.5967 3.8209 6.9175 51 1 5.5706 2.4813 7.5931 52 1 2.6742 2.6595 7.3622 53 1 3.6417 1.3376 8.0707 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000416667593.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:54:33 Heat of formation + Delta-G solvation = -36.171312 kcal Electronic energy + Delta-G solvation = -33192.788692 eV Core-core repulsion = 29227.817357 eV Total energy + Delta-G solvation = -3964.971334 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.203 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.88333 -38.70246 -38.21625 -37.80875 -36.90399 -34.56262 -33.67913 -32.07312 -31.70896 -29.76468 -28.51142 -27.40268 -27.01693 -26.58427 -26.21880 -22.83805 -22.29737 -21.64438 -21.38880 -19.55198 -19.12846 -18.56601 -17.84307 -17.53516 -17.17103 -16.83821 -16.54929 -16.08583 -15.49450 -15.31336 -15.14870 -15.06270 -14.75512 -14.62898 -14.36564 -14.18128 -14.08301 -13.91283 -13.69612 -13.53145 -13.33736 -13.21881 -13.13777 -13.11435 -12.96047 -12.85172 -12.58236 -12.50911 -12.35151 -12.26779 -12.18727 -12.02819 -12.01597 -11.91926 -11.57510 -11.44707 -11.43242 -11.31963 -10.92717 -10.76798 -9.94955 -9.73440 -9.21856 -8.31488 -6.36969 -0.36963 1.28158 1.37288 1.45798 1.99362 2.30462 2.54226 3.02646 3.04180 3.36527 3.56239 3.73813 3.77121 3.94543 4.04104 4.09718 4.13284 4.29927 4.33650 4.40307 4.46563 4.51583 4.57151 4.62808 4.66748 4.67941 4.71234 4.75309 4.78048 4.84006 4.86702 4.90370 4.93991 4.94583 5.00384 5.05141 5.05358 5.11716 5.15167 5.25082 5.27928 5.30175 5.45873 5.48251 5.58969 5.72203 5.82367 5.96423 5.97517 6.17390 6.32921 6.67039 7.27673 8.85603 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018437 B = 0.004116 C = 0.003975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.295548 B = 6800.853794 C = 7042.674057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.245 3.755 3 H 0.039 0.961 4 C -0.529 4.529 5 H 0.035 0.965 6 C 0.014 3.986 7 N -0.945 5.945 8 Si 0.942 3.058 9 H -0.250 1.250 10 H -0.247 1.247 11 H -0.298 1.298 12 N -0.994 5.994 13 C 0.099 3.901 14 S 2.783 3.217 15 O -0.989 6.989 16 O -1.021 7.021 17 N -0.993 5.993 18 C 0.075 3.925 19 C 0.175 3.825 20 C -0.154 4.154 21 C -0.169 4.169 22 C 0.048 3.952 23 N -0.524 5.524 24 C 0.035 3.965 25 C -0.138 4.138 26 C -0.122 4.122 27 C 0.036 3.964 28 H 0.072 0.928 29 H 0.041 0.959 30 H 0.066 0.934 31 H 0.267 0.733 32 H 0.029 0.971 33 H 0.090 0.910 34 H 0.082 0.918 35 H 0.066 0.934 36 H 0.102 0.898 37 H 0.062 0.938 38 H 0.056 0.944 39 H 0.088 0.912 40 H 0.071 0.929 41 H 0.079 0.921 42 H 0.077 0.923 43 H 0.060 0.940 44 H 0.057 0.943 45 H 0.108 0.892 46 H 0.026 0.974 47 H 0.063 0.937 48 H 0.074 0.926 49 H 0.060 0.940 50 H 0.079 0.921 51 H 0.080 0.920 52 H 0.058 0.942 53 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.612 7.511 24.968 26.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.139 3.861 3 H 0.056 0.944 4 C -0.568 4.568 5 H 0.054 0.946 6 C -0.184 4.184 7 N -0.585 5.585 8 Si 0.768 3.232 9 H -0.175 1.175 10 H -0.171 1.171 11 H -0.226 1.226 12 N -0.834 5.834 13 C -0.046 4.046 14 S 2.795 3.205 15 O -0.973 6.973 16 O -1.005 7.005 17 N -0.835 5.835 18 C -0.069 4.069 19 C 0.089 3.911 20 C -0.213 4.213 21 C -0.227 4.227 22 C -0.081 4.081 23 N -0.248 5.248 24 C -0.093 4.093 25 C -0.176 4.176 26 C -0.160 4.160 27 C -0.091 4.091 28 H 0.091 0.909 29 H 0.060 0.940 30 H 0.085 0.915 31 H 0.076 0.924 32 H 0.048 0.952 33 H 0.108 0.892 34 H 0.101 0.899 35 H 0.085 0.915 36 H 0.121 0.879 37 H 0.081 0.919 38 H 0.075 0.925 39 H 0.107 0.893 40 H 0.090 0.910 41 H 0.097 0.903 42 H 0.096 0.904 43 H 0.078 0.922 44 H 0.075 0.925 45 H 0.126 0.874 46 H 0.044 0.956 47 H 0.081 0.919 48 H 0.093 0.907 49 H 0.079 0.921 50 H 0.098 0.902 51 H 0.099 0.901 52 H 0.077 0.923 53 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -5.455 7.004 24.861 26.398 hybrid contribution -0.462 0.888 -1.454 1.765 sum -5.917 7.892 23.407 25.401 Atomic orbital electron populations 1.22350 0.96071 1.02483 1.00441 1.18791 0.92542 0.92087 0.82689 0.94361 1.21472 1.31595 1.13044 0.90722 0.94636 1.25825 0.97396 0.99997 0.95162 1.70042 1.47351 1.42476 0.98651 0.85971 0.79739 0.79815 0.77689 1.17520 1.17050 1.22621 1.57501 1.70304 1.20951 1.34656 1.21529 1.01323 0.80339 1.01415 1.01928 0.74152 0.72575 0.71826 1.93740 1.72959 1.59893 1.70682 1.93497 1.73977 1.59428 1.73613 1.57889 1.67297 1.23066 1.35252 1.21788 1.00575 0.81030 1.03551 1.20578 0.95578 0.91753 0.83220 1.22185 0.92757 1.02908 1.03431 1.22836 1.02009 0.95106 1.02726 1.22664 0.88207 0.99594 0.97639 1.64702 1.11193 1.46180 1.02724 1.23404 0.95974 0.96179 0.93762 1.22604 0.96843 1.00802 0.97354 1.22366 0.97708 1.00366 0.95591 1.22928 0.97219 0.95129 0.93863 0.90904 0.94047 0.91500 0.92372 0.95227 0.89212 0.89932 0.91505 0.87934 0.91887 0.92490 0.89297 0.91035 0.90258 0.90422 0.92191 0.92494 0.87428 0.95605 0.91912 0.90689 0.92112 0.90183 0.90133 0.92327 0.89498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.84 8.66 71.98 0.62 -5.22 16 2 C 0.24 11.33 2.20 44.24 0.10 11.43 16 3 H 0.04 1.89 6.02 -2.39 -0.01 1.88 16 4 C -0.53 -30.46 8.95 25.60 0.23 -30.23 16 5 H 0.04 2.29 7.89 -2.91 -0.02 2.27 16 6 C 0.01 0.83 5.45 84.66 0.46 1.29 16 7 N -0.95 -59.40 13.96 21.45 0.30 -59.10 16 8 Si 0.94 43.79 24.37 68.60 1.67 45.46 16 9 H -0.25 -10.50 6.87 99.48 0.68 -9.82 16 10 H -0.25 -10.63 6.53 99.48 0.65 -9.99 16 11 H -0.30 -14.01 7.11 99.48 0.71 -13.31 16 12 N -0.99 -40.44 3.12 -520.45 -1.62 -42.07 16 13 C 0.10 3.51 9.41 127.77 1.20 4.71 16 14 S 2.78 108.09 4.01 -56.49 -0.23 107.86 16 15 O -0.99 -39.98 11.12 -128.00 -1.42 -41.40 16 16 O -1.02 -47.88 15.21 -128.00 -1.95 -49.82 16 17 N -0.99 -26.84 1.55 -494.81 -0.77 -27.60 16 18 C 0.08 1.70 8.01 127.77 1.02 2.73 16 19 C 0.18 3.71 0.77 3.60 0.00 3.72 16 20 C -0.15 -2.42 8.63 71.98 0.62 -1.80 16 21 C -0.17 -4.34 6.70 71.98 0.48 -3.86 16 22 C 0.05 0.82 3.85 86.30 0.33 1.15 16 23 N -0.52 -11.07 4.14 -883.02 -3.65 -14.72 16 24 C 0.03 0.90 4.59 86.65 0.40 1.30 16 25 C -0.14 -3.11 7.06 31.80 0.22 -2.89 16 26 C -0.12 -1.91 6.93 31.47 0.22 -1.70 16 27 C 0.04 0.55 6.70 86.45 0.58 1.13 16 28 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 29 H 0.04 1.62 3.27 -2.39 -0.01 1.62 16 30 H 0.07 2.41 6.67 -2.39 -0.02 2.40 16 31 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 32 H 0.03 1.14 8.14 -2.39 -0.02 1.13 16 33 H 0.09 2.55 5.10 -2.38 -0.01 2.54 16 34 H 0.08 2.76 6.44 -2.38 -0.02 2.75 16 35 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 36 H 0.10 1.63 5.21 -2.38 -0.01 1.61 16 37 H 0.06 1.69 6.88 -2.39 -0.02 1.67 16 38 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.09 0.99 8.14 -2.38 -0.02 0.98 16 40 H 0.07 0.98 7.78 -2.39 -0.02 0.96 16 41 H 0.08 2.50 5.51 -2.39 -0.01 2.49 16 42 H 0.08 1.57 8.12 -2.39 -0.02 1.55 16 43 H 0.06 1.75 2.72 -2.39 -0.01 1.74 16 44 H 0.06 0.80 5.97 -2.38 -0.01 0.79 16 45 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 46 H 0.03 0.85 3.93 -7.37 -0.03 0.82 16 47 H 0.06 1.48 5.18 -2.39 -0.01 1.46 16 48 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 49 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 50 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 51 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 52 H 0.06 0.71 7.72 -2.39 -0.02 0.69 16 53 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -75.97 378.15 -0.37 -76.34 By element: Atomic # 1 Polarization: 22.50 SS G_CDS: 0.81 Total: 23.30 kcal Atomic # 6 Polarization: -24.73 SS G_CDS: 6.49 Total: -18.23 kcal Atomic # 7 Polarization: -137.75 SS G_CDS: -5.75 Total: -143.50 kcal Atomic # 8 Polarization: -87.86 SS G_CDS: -3.37 Total: -91.23 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 1.67 Total: 45.46 kcal Atomic # 16 Polarization: 108.09 SS G_CDS: -0.23 Total: 107.86 kcal Total: -75.97 -0.37 -76.34 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416667593.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.165 kcal (2) G-P(sol) polarization free energy of solvation -75.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds