Wall clock time and date at job start Wed Apr 1 2020 05:06:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46896 * 111.00222 * 2 1 4 4 C 1.52994 * 109.47370 * 180.02562 * 3 2 1 5 5 H 1.09006 * 109.46928 * 305.00519 * 4 3 2 6 6 C 1.52999 * 109.46905 * 64.99950 * 4 3 2 7 7 C 1.52994 * 109.47361 * 185.00609 * 4 3 2 8 8 N 1.46500 * 109.47581 * 175.00119 * 7 4 3 9 9 C 1.34771 * 120.00556 * 179.97438 * 8 7 4 10 10 O 1.21351 * 119.99648 * 359.97438 * 9 8 7 11 11 C 1.49445 * 120.00405 * 179.97438 * 9 8 7 12 12 O 1.21351 * 119.99947 * 359.97438 * 11 9 8 13 13 N 1.34771 * 120.00405 * 179.97438 * 11 9 8 14 14 C 1.46500 * 120.00556 * 180.02562 * 13 11 9 15 15 H 1.09009 * 109.46624 * 324.99750 * 14 13 11 16 16 C 1.52996 * 109.47466 * 205.00158 * 14 13 11 17 17 C 1.50702 * 109.47159 * 64.99479 * 16 14 13 18 18 H 1.08002 * 120.00299 * 0.02562 * 17 16 14 19 19 C 1.37884 * 119.99942 * 179.72211 * 17 16 14 20 20 N 1.31514 * 119.99985 * 180.27663 * 19 17 16 21 21 Si 1.86800 * 119.99777 * 0.28166 * 19 17 16 22 22 H 1.48498 * 109.47109 * 89.99834 * 21 19 17 23 23 H 1.48507 * 109.46754 * 209.99574 * 21 19 17 24 24 H 1.48498 * 109.47278 * 329.99405 * 21 19 17 25 25 C 1.50700 * 109.47471 * 84.99708 * 14 13 11 26 26 C 1.38233 * 119.99377 * 39.72808 * 25 14 13 27 27 C 1.38237 * 119.99600 * 179.78842 * 26 25 14 28 28 C 1.38241 * 119.99990 * 0.44354 * 27 26 25 29 29 C 1.38237 * 119.99716 * 359.81238 * 28 27 26 30 30 C 1.38228 * 120.00326 * 220.00479 * 25 14 13 31 31 H 1.08993 * 109.47580 * 59.99461 * 1 2 3 32 32 H 1.09003 * 109.47226 * 180.02562 * 1 2 3 33 33 H 1.09007 * 109.46696 * 299.99694 * 1 2 3 34 34 H 1.00900 * 111.00023 * 123.96233 * 2 1 3 35 35 H 1.09010 * 109.46636 * 60.00214 * 3 2 1 36 36 H 1.08997 * 109.47356 * 300.00915 * 3 2 1 37 37 H 1.09006 * 109.46606 * 180.02562 * 6 4 3 38 38 H 1.08997 * 109.47113 * 300.00244 * 6 4 3 39 39 H 1.08998 * 109.47119 * 60.00762 * 6 4 3 40 40 H 1.09004 * 109.47773 * 54.99399 * 7 4 3 41 41 H 1.09005 * 109.46832 * 294.99498 * 7 4 3 42 42 H 0.97002 * 119.99373 * 359.97438 * 8 7 4 43 43 H 0.97002 * 120.00072 * 359.97438 * 13 11 9 44 44 H 1.09004 * 109.47066 * 304.99682 * 16 14 13 45 45 H 1.08994 * 109.47405 * 184.99512 * 16 14 13 46 46 H 0.96996 * 119.99730 * 180.02562 * 20 19 17 47 47 H 1.07995 * 120.00514 * 359.97438 * 26 25 14 48 48 H 1.08001 * 120.00058 * 180.28006 * 27 26 25 49 49 H 1.07995 * 120.00194 * 179.83256 * 28 27 26 50 50 H 1.08001 * 119.99824 * 180.02562 * 29 28 27 51 51 H 1.08005 * 119.99906 * 359.97438 * 30 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 3.5249 1.3306 -0.0006 5 1 3.8728 0.7314 0.8409 6 6 4.0179 0.7077 -1.3083 7 6 4.0732 2.7533 0.1252 8 7 5.5325 2.7057 0.2447 9 6 6.2364 3.8484 0.3673 10 8 5.6613 4.9170 0.3783 11 6 7.7250 3.7997 0.4897 12 8 8.3001 2.7312 0.4791 13 7 8.4289 4.9425 0.6118 14 6 9.8883 4.8948 0.7312 15 1 10.1776 4.0104 1.2990 16 6 10.3821 6.1493 1.4546 17 6 9.8659 6.1487 2.8705 18 1 9.2478 5.3347 3.2196 19 6 10.1879 7.1842 3.7221 20 7 9.7420 7.1809 4.9593 21 14 11.2575 8.5917 3.1184 22 1 10.3962 9.6583 2.5477 23 1 12.0393 9.1418 4.2549 24 1 12.1872 8.0938 2.0730 25 6 10.5031 4.8328 -0.6433 26 6 9.9718 5.5870 -1.6727 27 6 10.5385 5.5335 -2.9324 28 6 11.6307 4.7186 -3.1650 29 6 12.1586 3.9603 -2.1367 30 6 11.5947 4.0173 -0.8760 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8901 34 1 1.8307 -0.5262 0.7813 35 1 1.6460 1.8947 0.8901 36 1 1.6460 1.8948 -0.8899 37 1 5.1076 0.6783 -1.3085 38 1 3.6273 -0.3059 -1.3979 39 1 3.6702 1.3069 -2.1498 40 1 3.6514 3.2283 1.0111 41 1 3.7997 3.3277 -0.7600 42 1 5.9922 1.8515 0.2355 43 1 7.9694 5.7967 0.6198 44 1 10.0173 7.0355 0.9353 45 1 11.4720 6.1573 1.4653 46 1 9.9682 7.9096 5.5583 47 1 9.1160 6.2204 -1.4920 48 1 10.1262 6.1262 -3.7356 49 1 12.0717 4.6747 -4.1498 50 1 13.0122 3.3240 -2.3183 51 1 12.0072 3.4249 -0.0727 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000419480145.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:06:56 Heat of formation + Delta-G solvation = -55.904618 kcal Electronic energy + Delta-G solvation = -30195.030854 eV Core-core repulsion = 26093.759868 eV Total energy + Delta-G solvation = -4101.270986 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.45131 -39.25966 -38.23709 -37.56685 -35.65382 -35.09218 -32.75289 -32.43331 -31.27635 -30.59051 -29.36376 -27.30733 -27.14920 -25.47262 -24.09034 -22.90494 -22.31801 -21.81146 -20.86651 -20.23770 -19.79983 -18.21314 -17.15114 -16.74424 -16.37654 -16.21084 -15.93501 -15.61181 -15.30820 -15.02977 -14.89507 -14.58392 -14.35011 -14.28428 -13.98421 -13.61051 -13.37746 -13.13548 -13.06896 -12.90436 -12.74559 -12.61725 -12.44061 -12.37351 -12.16349 -12.00221 -11.41527 -11.37528 -11.28584 -11.23605 -11.13185 -11.09862 -10.78875 -10.51539 -10.29862 -9.90358 -9.40810 -9.25999 -9.22742 -8.87549 -8.71423 -8.64428 -8.61529 -8.36552 -6.11698 -4.12048 1.61133 1.66641 1.75230 2.62062 3.26025 3.34453 3.36797 3.55874 3.74810 3.96014 4.13146 4.37789 4.46360 4.59339 4.68024 4.85231 4.95911 5.06353 5.12884 5.14061 5.15083 5.22145 5.23658 5.26912 5.35941 5.39486 5.48721 5.49188 5.62115 5.73462 5.76713 5.77969 5.91232 5.94245 6.08541 6.16310 6.23945 6.25466 6.35442 6.52477 6.60889 6.70476 6.72585 6.87472 6.91102 6.99047 7.10322 7.25502 7.27741 7.62291 7.74852 8.04736 8.40402 8.42171 8.92816 9.48572 11.01083 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009632 B = 0.002663 C = 0.002203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2906.405450 B =10513.208196 C =12707.846979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.693 5.693 3 C 0.064 3.936 4 C -0.102 4.102 5 H 0.079 0.921 6 C -0.141 4.141 7 C 0.123 3.877 8 N -0.704 5.704 9 C 0.509 3.491 10 O -0.518 6.518 11 C 0.506 3.494 12 O -0.531 6.531 13 N -0.666 5.666 14 C 0.193 3.807 15 H 0.097 0.903 16 C -0.014 4.014 17 C -0.523 4.523 18 H 0.076 0.924 19 C 0.072 3.928 20 N -0.896 5.896 21 Si 0.875 3.125 22 H -0.276 1.276 23 H -0.287 1.287 24 H -0.264 1.264 25 C -0.080 4.080 26 C -0.109 4.109 27 C -0.124 4.124 28 C -0.131 4.131 29 C -0.122 4.122 30 C -0.105 4.105 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.022 0.978 34 H 0.342 0.658 35 H 0.035 0.965 36 H 0.077 0.923 37 H 0.053 0.947 38 H 0.069 0.931 39 H 0.054 0.946 40 H 0.071 0.929 41 H 0.073 0.927 42 H 0.412 0.588 43 H 0.414 0.586 44 H 0.021 0.979 45 H 0.038 0.962 46 H 0.264 0.736 47 H 0.119 0.881 48 H 0.117 0.883 49 H 0.115 0.885 50 H 0.118 0.882 51 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.547 -11.633 -14.397 21.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.323 5.323 3 C -0.065 4.065 4 C -0.122 4.122 5 H 0.097 0.903 6 C -0.199 4.199 7 C -0.001 4.001 8 N -0.359 5.359 9 C 0.290 3.710 10 O -0.393 6.393 11 C 0.286 3.714 12 O -0.409 6.409 13 N -0.316 5.316 14 C 0.089 3.911 15 H 0.115 0.885 16 C -0.052 4.052 17 C -0.561 4.561 18 H 0.094 0.906 19 C -0.130 4.130 20 N -0.534 5.534 21 Si 0.703 3.297 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.189 1.189 25 C -0.082 4.082 26 C -0.128 4.128 27 C -0.142 4.142 28 C -0.149 4.149 29 C -0.140 4.140 30 C -0.124 4.124 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.041 0.959 34 H 0.159 0.841 35 H 0.053 0.947 36 H 0.095 0.905 37 H 0.072 0.928 38 H 0.088 0.912 39 H 0.073 0.927 40 H 0.090 0.910 41 H 0.091 0.909 42 H 0.249 0.751 43 H 0.250 0.750 44 H 0.040 0.960 45 H 0.056 0.944 46 H 0.074 0.926 47 H 0.137 0.863 48 H 0.135 0.865 49 H 0.133 0.867 50 H 0.136 0.864 51 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -10.513 -11.559 -14.890 21.583 hybrid contribution 0.287 1.171 0.826 1.461 sum -10.226 -10.388 -14.064 20.255 Atomic orbital electron populations 1.22193 0.87624 1.01934 1.00516 1.60366 1.07814 1.14095 1.50057 1.21940 0.93606 0.89809 1.01186 1.21371 0.95074 0.95520 1.00198 0.90263 1.21771 1.00564 1.01727 0.95821 1.21425 0.79273 0.96776 1.02650 1.45694 1.07435 1.09467 1.73256 1.20367 0.88751 0.84417 0.77498 1.90761 1.71592 1.29094 1.47807 1.19909 0.87513 0.85280 0.78735 1.90715 1.71245 1.29073 1.49865 1.45753 1.07896 1.08772 1.69203 1.20130 0.77194 1.02913 0.90834 0.88482 1.19902 0.97553 0.91279 0.96461 1.20988 1.32691 1.08824 0.93614 0.90638 1.24981 0.95465 0.97916 0.94684 1.69901 1.45270 1.32751 1.05516 0.86848 0.81275 0.82901 0.78725 1.20160 1.21281 1.18894 1.20504 0.95867 0.95620 0.96169 1.20981 0.99977 0.99085 0.92725 1.21069 0.96808 0.99452 0.96873 1.21043 0.97228 0.97876 0.98801 1.21067 1.00009 0.99745 0.93222 1.21029 0.96033 0.98288 0.97011 0.91657 0.91375 0.95949 0.84058 0.94693 0.90482 0.92819 0.91173 0.92675 0.91031 0.90896 0.75143 0.74964 0.96046 0.94413 0.92584 0.86336 0.86542 0.86670 0.86397 0.85878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 10.70 60.07 0.64 0.80 16 2 N -0.69 -4.67 6.31 -121.13 -0.76 -5.43 16 3 C 0.06 0.45 5.07 -3.83 -0.02 0.43 16 4 C -0.10 -0.78 2.57 -90.63 -0.23 -1.01 16 5 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 6 C -0.14 -1.11 8.95 37.16 0.33 -0.78 16 7 C 0.12 1.24 5.06 -4.05 -0.02 1.21 16 8 N -0.70 -8.77 5.28 -60.73 -0.32 -9.09 16 9 C 0.51 8.25 7.89 -11.59 -0.09 8.16 16 10 O -0.52 -9.47 16.48 5.50 0.09 -9.38 16 11 C 0.51 9.14 7.85 -11.59 -0.09 9.05 16 12 O -0.53 -10.25 16.14 5.50 0.09 -10.17 16 13 N -0.67 -12.46 4.01 -55.36 -0.22 -12.68 16 14 C 0.19 3.78 2.12 -69.08 -0.15 3.63 16 15 H 0.10 2.04 7.44 -51.92 -0.39 1.65 16 16 C -0.01 -0.32 3.56 -27.88 -0.10 -0.42 16 17 C -0.52 -14.10 9.39 -34.44 -0.32 -14.43 16 18 H 0.08 2.24 7.99 -52.49 -0.42 1.82 16 19 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 20 N -0.90 -26.95 13.96 55.43 0.77 -26.18 16 21 Si 0.88 20.99 27.47 -169.99 -4.67 16.32 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 23 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 24 H -0.26 -6.08 6.54 56.52 0.37 -5.71 16 25 C -0.08 -1.40 4.91 -104.63 -0.51 -1.91 16 26 C -0.11 -1.74 9.33 -39.58 -0.37 -2.11 16 27 C -0.12 -1.72 10.05 -39.58 -0.40 -2.11 16 28 C -0.13 -1.72 10.05 -39.58 -0.40 -2.11 16 29 C -0.12 -1.68 10.05 -39.59 -0.40 -2.08 16 30 C -0.11 -1.67 9.67 -39.59 -0.38 -2.06 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.02 0.12 8.14 -51.93 -0.42 -0.30 16 34 H 0.34 2.01 8.82 -39.29 -0.35 1.67 16 35 H 0.03 0.25 8.14 -51.92 -0.42 -0.17 16 36 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.05 0.44 7.18 -51.93 -0.37 0.07 16 38 H 0.07 0.55 7.75 -51.93 -0.40 0.14 16 39 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 42 H 0.41 4.71 7.13 -40.82 -0.29 4.42 16 43 H 0.41 7.68 8.07 -40.82 -0.33 7.35 16 44 H 0.02 0.47 7.58 -51.93 -0.39 0.07 16 45 H 0.04 0.85 7.19 -51.93 -0.37 0.48 16 46 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 47 H 0.12 1.81 7.71 -52.49 -0.40 1.41 16 48 H 0.12 1.33 8.06 -52.49 -0.42 0.90 16 49 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 50 H 0.12 1.31 8.06 -52.49 -0.42 0.88 16 51 H 0.12 1.85 8.04 -52.48 -0.42 1.42 16 LS Contribution 423.73 15.07 6.39 6.39 Total: -1.00 -32.18 423.73 -9.62 -41.81 By element: Atomic # 1 Polarization: 20.62 SS G_CDS: -8.38 Total: 12.23 kcal Atomic # 6 Polarization: -1.21 SS G_CDS: -2.61 Total: -3.82 kcal Atomic # 7 Polarization: -52.85 SS G_CDS: -0.53 Total: -53.38 kcal Atomic # 8 Polarization: -19.72 SS G_CDS: 0.18 Total: -19.54 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -4.67 Total: 16.32 kcal Total LS contribution 6.39 Total: 6.39 kcal Total: -32.18 -9.62 -41.81 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000419480145.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.099 kcal (2) G-P(sol) polarization free energy of solvation -32.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds