Wall clock time and date at job start Wed Apr 1 2020 05:04:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52990 * 109.47424 * 2 1 4 4 N 1.46908 * 109.46827 * 120.00221 * 2 1 3 5 5 C 1.46896 * 111.00326 * 56.04145 * 4 2 1 6 6 C 1.46904 * 110.99714 * 180.02562 * 4 2 1 7 7 C 1.53001 * 109.46922 * 163.05471 * 6 4 2 8 8 H 1.08995 * 109.47103 * 302.54039 * 7 6 4 9 9 C 1.52995 * 109.46895 * 182.53849 * 7 6 4 10 10 N 1.46506 * 109.46794 * 62.54219 * 7 6 4 11 11 C 1.34777 * 119.99546 * 211.85326 * 10 7 6 12 12 O 1.21358 * 120.00012 * 359.97438 * 11 10 7 13 13 C 1.49355 * 120.00104 * 180.02562 * 11 10 7 14 14 O 1.21378 * 119.99764 * 359.97438 * 13 11 10 15 15 N 1.34768 * 120.00169 * 180.02562 * 13 11 10 16 16 C 1.39747 * 120.00080 * 184.74105 * 15 13 11 17 17 C 1.39341 * 119.95909 * 141.61119 * 16 15 13 18 18 C 1.38470 * 120.42480 * 179.97438 * 17 16 15 19 19 C 1.37692 * 120.32948 * 359.97378 * 18 17 16 20 20 C 1.40744 * 119.89569 * 0.02562 * 19 18 17 21 21 C 1.41409 * 120.20646 * 179.97438 * 20 19 18 22 22 H 1.08005 * 119.99902 * 207.17610 * 21 20 19 23 23 C 1.39927 * 120.00249 * 27.17739 * 21 20 19 24 24 N 1.30831 * 120.00053 * 12.14625 * 23 21 20 25 25 Si 1.86795 * 120.00449 * 192.14771 * 23 21 20 26 26 H 1.48500 * 109.47168 * 89.99663 * 25 23 21 27 27 H 1.48502 * 109.47680 * 209.99935 * 25 23 21 28 28 H 1.48500 * 109.47203 * 329.99976 * 25 23 21 29 29 C 1.38306 * 119.94889 * 321.33172 * 16 15 13 30 30 H 1.09001 * 109.47157 * 300.00263 * 1 2 3 31 31 H 1.08995 * 109.46985 * 60.00384 * 1 2 3 32 32 H 1.09003 * 109.47488 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47157 * 239.99737 * 2 1 3 34 34 H 1.08999 * 109.47434 * 299.99866 * 3 2 1 35 35 H 1.09001 * 109.47168 * 59.99744 * 3 2 1 36 36 H 1.09004 * 109.47610 * 180.02562 * 3 2 1 37 37 H 1.09003 * 109.47066 * 71.21136 * 5 4 2 38 38 H 1.08999 * 109.46918 * 191.20902 * 5 4 2 39 39 H 1.08997 * 109.47280 * 311.21493 * 5 4 2 40 40 H 1.08996 * 109.46979 * 283.05366 * 6 4 2 41 41 H 1.08998 * 109.47236 * 43.05553 * 6 4 2 42 42 H 1.09003 * 109.47461 * 180.02562 * 9 7 6 43 43 H 1.08995 * 109.47401 * 300.00008 * 9 7 6 44 44 H 1.09003 * 109.47112 * 60.00473 * 9 7 6 45 45 H 0.96995 * 120.00020 * 31.85300 * 10 7 6 46 46 H 0.96995 * 120.00344 * 4.73401 * 15 13 11 47 47 H 1.08006 * 119.78376 * 359.95057 * 17 16 15 48 48 H 1.07999 * 119.83560 * 179.97438 * 18 17 16 49 49 H 1.07999 * 120.05104 * 180.02562 * 19 18 17 50 50 H 0.97001 * 120.00497 * 179.97438 * 24 23 21 51 51 H 1.07999 * 120.16143 * 359.97438 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0196 -0.6926 1.1995 5 6 1.4729 -2.0535 1.2817 6 6 3.4881 -0.7117 1.2337 7 6 3.9609 -1.0441 2.6504 8 1 3.5539 -0.3141 3.3500 9 6 5.4894 -1.0019 2.7009 10 7 3.4970 -2.3843 3.0180 11 6 3.2018 -2.6664 4.3024 12 8 3.3208 -1.8104 5.1545 13 6 2.7295 -4.0328 4.6774 14 8 2.6110 -4.8890 3.8253 15 7 2.4338 -4.3147 5.9617 16 6 2.0875 -5.6177 6.3292 17 6 2.5323 -6.1402 7.5419 18 6 2.1944 -7.4299 7.9159 19 6 1.4140 -8.2107 7.0928 20 6 0.9572 -7.6967 5.8648 21 6 0.1559 -8.4929 5.0142 22 1 0.1633 -8.3205 3.9480 23 6 -0.6468 -9.5041 5.5537 24 7 -0.8435 -9.5638 6.8458 25 14 -1.4374 -10.7690 4.4294 26 1 -0.5215 -11.9263 4.2648 27 1 -2.7165 -11.2310 5.0260 28 1 -1.7029 -10.1554 3.1034 29 6 1.2988 -6.3849 5.4912 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.6768 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 3.1301 1.4424 -0.0005 37 1 1.9330 -2.6769 0.5150 38 1 1.6854 -2.4716 2.2657 39 1 0.3946 -2.0220 1.1254 40 1 3.8579 -1.4672 0.5406 41 1 3.8711 0.2666 0.9431 42 1 5.8264 -1.2392 3.7100 43 1 5.8965 -1.7319 2.0014 44 1 5.8346 -0.0048 2.4274 45 1 3.4024 -3.0685 2.3370 46 1 2.4615 -3.6132 6.6310 47 1 3.1448 -5.5354 8.1942 48 1 2.5447 -7.8255 8.8578 49 1 1.1529 -9.2158 7.3891 50 1 -1.4002 -10.2645 7.2199 51 1 0.9493 -5.9793 4.5532 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000453751693.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:04:52 Heat of formation + Delta-G solvation = -33.853682 kcal Electronic energy + Delta-G solvation = -30691.970678 eV Core-core repulsion = 26591.655892 eV Total energy + Delta-G solvation = -4100.314786 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.74543 -39.30934 -38.31525 -37.12262 -35.83544 -34.52963 -33.04854 -32.04571 -31.43498 -29.85700 -28.61442 -28.42095 -26.11780 -25.38378 -25.12390 -24.20939 -21.69801 -20.99952 -20.78721 -20.29100 -19.75059 -18.39705 -17.45444 -16.90978 -16.45689 -16.00373 -15.57191 -15.43229 -15.24295 -15.12449 -14.81049 -14.60079 -14.08344 -13.88835 -13.73642 -13.24584 -13.14479 -13.01354 -12.91952 -12.64416 -12.50919 -12.47096 -12.22672 -12.21004 -11.80915 -11.74454 -11.66145 -11.43467 -11.34192 -11.21082 -11.15321 -11.13265 -10.92046 -10.83749 -10.46719 -10.11396 -9.68438 -9.40265 -9.21395 -9.11965 -8.98341 -8.54441 -7.47648 -7.02887 -6.69952 -4.37495 1.57047 2.50244 2.76370 2.94255 3.08878 3.13025 3.19482 3.51722 3.56499 3.88195 3.96149 4.47698 4.58497 4.63849 4.66878 4.75319 4.81658 4.97380 5.03224 5.09558 5.20964 5.30996 5.34325 5.41357 5.45498 5.50740 5.53385 5.63781 5.66313 5.75177 5.83717 5.92453 5.94116 6.04661 6.21880 6.22752 6.35919 6.60927 6.78688 6.81134 6.87369 6.98607 7.02674 7.11845 7.24697 7.44928 7.65552 7.83166 7.90661 8.05700 8.08781 8.17640 8.46483 8.65044 8.90931 8.94242 10.22915 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012117 B = 0.002523 C = 0.002181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2310.339179 B =11093.108748 C =12834.582750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.074 3.926 3 C -0.147 4.147 4 N -0.534 5.534 5 C 0.000 4.000 6 C 0.040 3.960 7 C 0.144 3.856 8 H 0.104 0.896 9 C -0.164 4.164 10 N -0.696 5.696 11 C 0.513 3.487 12 O -0.521 6.521 13 C 0.495 3.505 14 O -0.502 6.502 15 N -0.633 5.633 16 C 0.138 3.862 17 C -0.250 4.250 18 C -0.095 4.095 19 C -0.163 4.163 20 C 0.116 3.884 21 C -0.457 4.457 22 H 0.078 0.922 23 C 0.073 3.927 24 N -0.800 5.800 25 Si 0.911 3.089 26 H -0.268 1.268 27 H -0.278 1.278 28 H -0.263 1.263 29 C -0.201 4.201 30 H 0.065 0.935 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.038 0.962 34 H 0.058 0.942 35 H 0.065 0.935 36 H 0.056 0.944 37 H 0.027 0.973 38 H 0.085 0.915 39 H 0.074 0.926 40 H 0.042 0.958 41 H 0.095 0.905 42 H 0.065 0.935 43 H 0.058 0.942 44 H 0.069 0.931 45 H 0.411 0.589 46 H 0.410 0.590 47 H 0.092 0.908 48 H 0.094 0.906 49 H 0.123 0.877 50 H 0.280 0.720 51 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.598 17.111 -11.330 21.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.034 4.034 3 C -0.205 4.205 4 N -0.259 5.259 5 C -0.148 4.148 6 C -0.088 4.088 7 C 0.039 3.961 8 H 0.122 0.878 9 C -0.223 4.223 10 N -0.351 5.351 11 C 0.294 3.706 12 O -0.397 6.397 13 C 0.276 3.724 14 O -0.376 6.376 15 N -0.278 5.278 16 C 0.047 3.953 17 C -0.271 4.271 18 C -0.114 4.114 19 C -0.183 4.183 20 C 0.113 3.887 21 C -0.487 4.487 22 H 0.096 0.904 23 C -0.144 4.144 24 N -0.426 5.426 25 Si 0.736 3.264 26 H -0.193 1.193 27 H -0.203 1.203 28 H -0.186 1.186 29 C -0.222 4.222 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.056 0.944 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.075 0.925 37 H 0.046 0.954 38 H 0.103 0.897 39 H 0.092 0.908 40 H 0.060 0.940 41 H 0.113 0.887 42 H 0.084 0.916 43 H 0.077 0.923 44 H 0.088 0.912 45 H 0.249 0.751 46 H 0.246 0.754 47 H 0.110 0.890 48 H 0.112 0.888 49 H 0.141 0.859 50 H 0.090 0.910 51 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 6.305 17.271 -10.774 21.310 hybrid contribution -0.138 -1.030 -1.082 1.500 sum 6.167 16.241 -11.856 21.033 Atomic orbital electron populations 1.21942 0.94169 1.02347 1.02245 1.21629 0.95917 0.94945 0.90877 1.21926 1.00844 0.95362 1.02358 1.62024 1.07114 1.17802 1.38932 1.22954 1.00998 0.88145 1.02659 1.22587 0.88390 1.02287 0.95549 1.21127 0.94024 0.84297 0.96648 0.87758 1.22169 0.94640 1.02393 1.03053 1.46114 1.65808 1.14430 1.08777 1.20270 0.78385 0.88637 0.83336 1.90733 1.51753 1.48268 1.48922 1.20023 0.80106 0.88188 0.84115 1.90809 1.50537 1.47719 1.48556 1.43095 1.64919 1.11069 1.08719 1.17449 0.98763 0.82836 0.96234 1.20132 1.10756 0.97786 0.98403 1.20502 0.98920 0.93675 0.98303 1.21465 0.99986 1.00359 0.96478 1.17515 0.89321 0.89824 0.92059 1.19573 1.21097 1.12855 0.95159 0.90379 1.25895 0.95563 0.97502 0.95395 1.69796 1.30571 1.29888 1.12365 0.86258 0.78569 0.80604 0.80953 1.19337 1.20339 1.18649 1.21084 1.04669 0.95106 1.01375 0.91620 0.92266 0.92166 0.94357 0.92249 0.91565 0.92542 0.95444 0.89682 0.90762 0.94027 0.88656 0.91614 0.92258 0.91240 0.75073 0.75368 0.88972 0.88799 0.85897 0.90954 0.87343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 8.87 37.16 0.33 -0.85 16 2 C 0.07 0.60 2.68 -67.71 -0.18 0.41 16 3 C -0.15 -0.97 9.02 37.15 0.34 -0.64 16 4 N -0.53 -5.05 4.58 -234.89 -1.08 -6.13 16 5 C 0.00 0.00 8.29 60.06 0.50 0.50 16 6 C 0.04 0.32 4.60 -3.82 -0.02 0.31 16 7 C 0.14 1.39 2.92 -67.93 -0.20 1.19 16 8 H 0.10 1.19 7.37 -51.93 -0.38 0.81 16 9 C -0.16 -1.34 9.52 37.15 0.35 -0.98 16 10 N -0.70 -8.28 2.84 -54.27 -0.15 -8.43 16 11 C 0.51 7.75 7.49 -11.63 -0.09 7.66 16 12 O -0.52 -8.59 16.03 5.49 0.09 -8.50 16 13 C 0.50 8.98 7.71 -11.63 -0.09 8.89 16 14 O -0.50 -10.29 14.13 5.47 0.08 -10.22 16 15 N -0.63 -11.95 5.31 -10.34 -0.05 -12.01 16 16 C 0.14 3.14 6.22 -83.81 -0.52 2.61 16 17 C -0.25 -5.51 9.97 -39.09 -0.39 -5.90 16 18 C -0.09 -2.20 10.01 -39.70 -0.40 -2.60 16 19 C -0.16 -4.23 8.67 -38.83 -0.34 -4.57 16 20 C 0.12 3.13 5.56 -106.85 -0.59 2.54 16 21 C -0.46 -12.31 9.06 -37.74 -0.34 -12.65 16 22 H 0.08 2.06 7.87 -52.48 -0.41 1.65 16 23 C 0.07 1.85 5.24 -17.35 -0.09 1.75 16 24 N -0.80 -20.66 10.81 55.55 0.60 -20.06 16 25 Si 0.91 18.91 29.58 -169.99 -5.03 13.88 16 26 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 27 H -0.28 -5.63 7.11 56.52 0.40 -5.22 16 28 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 29 C -0.20 -5.11 8.41 -38.66 -0.33 -5.43 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.50 6.11 -51.93 -0.32 0.19 16 33 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.06 0.33 6.08 -51.93 -0.32 0.01 16 37 H 0.03 0.27 7.96 -51.93 -0.41 -0.14 16 38 H 0.08 1.06 4.93 -51.93 -0.26 0.80 16 39 H 0.07 0.78 5.65 -51.93 -0.29 0.49 16 40 H 0.04 0.32 7.91 -51.93 -0.41 -0.09 16 41 H 0.10 0.62 5.60 -51.93 -0.29 0.33 16 42 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 43 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.41 4.73 6.73 -40.82 -0.27 4.45 16 46 H 0.41 6.78 8.30 -40.82 -0.34 6.44 16 47 H 0.09 1.78 8.06 -52.48 -0.42 1.36 16 48 H 0.09 1.91 8.06 -52.49 -0.42 1.49 16 49 H 0.12 3.27 6.14 -52.49 -0.32 2.95 16 50 H 0.28 6.57 8.30 -40.82 -0.34 6.23 16 51 H 0.11 2.79 6.48 -52.49 -0.34 2.45 16 LS Contribution 405.53 15.07 6.11 6.11 Total: -1.00 -29.57 405.53 -9.22 -38.79 By element: Atomic # 1 Polarization: 22.05 SS G_CDS: -7.73 Total: 14.32 kcal Atomic # 6 Polarization: -5.70 SS G_CDS: -2.06 Total: -7.75 kcal Atomic # 7 Polarization: -45.94 SS G_CDS: -0.68 Total: -46.63 kcal Atomic # 8 Polarization: -18.88 SS G_CDS: 0.17 Total: -18.72 kcal Atomic # 14 Polarization: 18.91 SS G_CDS: -5.03 Total: 13.88 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -29.57 -9.22 -38.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453751693.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.934 kcal (2) G-P(sol) polarization free energy of solvation -29.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds