Wall clock time and date at job start Wed Apr 1 2020 05:04:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52990 * 109.47424 * 2 1 4 4 N 1.46908 * 109.46827 * 120.00221 * 2 1 3 5 5 C 1.46896 * 111.00326 * 56.04145 * 4 2 1 6 6 C 1.46904 * 110.99714 * 180.02562 * 4 2 1 7 7 C 1.53001 * 109.46922 * 163.05471 * 6 4 2 8 8 H 1.08995 * 109.47103 * 302.54039 * 7 6 4 9 9 C 1.52995 * 109.46895 * 182.53849 * 7 6 4 10 10 N 1.46506 * 109.46794 * 62.54219 * 7 6 4 11 11 C 1.34777 * 119.99546 * 211.85326 * 10 7 6 12 12 O 1.21358 * 120.00012 * 359.97438 * 11 10 7 13 13 C 1.49355 * 120.00104 * 180.02562 * 11 10 7 14 14 O 1.21378 * 119.99764 * 359.97438 * 13 11 10 15 15 N 1.34768 * 120.00169 * 180.02562 * 13 11 10 16 16 C 1.39747 * 120.00080 * 184.74105 * 15 13 11 17 17 C 1.39341 * 119.95909 * 141.61119 * 16 15 13 18 18 C 1.38470 * 120.42480 * 179.97438 * 17 16 15 19 19 C 1.37692 * 120.32948 * 359.97378 * 18 17 16 20 20 C 1.40744 * 119.89569 * 0.02562 * 19 18 17 21 21 C 1.41409 * 120.20646 * 179.97438 * 20 19 18 22 22 H 1.08005 * 119.99902 * 207.17610 * 21 20 19 23 23 C 1.39927 * 120.00249 * 27.17739 * 21 20 19 24 24 N 1.30831 * 120.00053 * 12.14625 * 23 21 20 25 25 Si 1.86795 * 120.00449 * 192.14771 * 23 21 20 26 26 H 1.48500 * 109.47168 * 89.99663 * 25 23 21 27 27 H 1.48502 * 109.47680 * 209.99935 * 25 23 21 28 28 H 1.48500 * 109.47203 * 329.99976 * 25 23 21 29 29 C 1.38306 * 119.94889 * 321.33172 * 16 15 13 30 30 H 1.09001 * 109.47157 * 300.00263 * 1 2 3 31 31 H 1.08995 * 109.46985 * 60.00384 * 1 2 3 32 32 H 1.09003 * 109.47488 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47157 * 239.99737 * 2 1 3 34 34 H 1.08999 * 109.47434 * 299.99866 * 3 2 1 35 35 H 1.09001 * 109.47168 * 59.99744 * 3 2 1 36 36 H 1.09004 * 109.47610 * 180.02562 * 3 2 1 37 37 H 1.09003 * 109.47066 * 71.21136 * 5 4 2 38 38 H 1.08999 * 109.46918 * 191.20902 * 5 4 2 39 39 H 1.08997 * 109.47280 * 311.21493 * 5 4 2 40 40 H 1.08996 * 109.46979 * 283.05366 * 6 4 2 41 41 H 1.08998 * 109.47236 * 43.05553 * 6 4 2 42 42 H 1.09003 * 109.47461 * 180.02562 * 9 7 6 43 43 H 1.08995 * 109.47401 * 300.00008 * 9 7 6 44 44 H 1.09003 * 109.47112 * 60.00473 * 9 7 6 45 45 H 0.96995 * 120.00020 * 31.85300 * 10 7 6 46 46 H 0.96995 * 120.00344 * 4.73401 * 15 13 11 47 47 H 1.08006 * 119.78376 * 359.95057 * 17 16 15 48 48 H 1.07999 * 119.83560 * 179.97438 * 18 17 16 49 49 H 1.07999 * 120.05104 * 180.02562 * 19 18 17 50 50 H 0.97001 * 120.00497 * 179.97438 * 24 23 21 51 51 H 1.07999 * 120.16143 * 359.97438 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0196 -0.6926 1.1995 5 6 1.4729 -2.0535 1.2817 6 6 3.4881 -0.7117 1.2337 7 6 3.9609 -1.0441 2.6504 8 1 3.5539 -0.3141 3.3500 9 6 5.4894 -1.0019 2.7009 10 7 3.4970 -2.3843 3.0180 11 6 3.2018 -2.6664 4.3024 12 8 3.3208 -1.8104 5.1545 13 6 2.7295 -4.0328 4.6774 14 8 2.6110 -4.8890 3.8253 15 7 2.4338 -4.3147 5.9617 16 6 2.0875 -5.6177 6.3292 17 6 2.5323 -6.1402 7.5419 18 6 2.1944 -7.4299 7.9159 19 6 1.4140 -8.2107 7.0928 20 6 0.9572 -7.6967 5.8648 21 6 0.1559 -8.4929 5.0142 22 1 0.1633 -8.3205 3.9480 23 6 -0.6468 -9.5041 5.5537 24 7 -0.8435 -9.5638 6.8458 25 14 -1.4374 -10.7690 4.4294 26 1 -0.5215 -11.9263 4.2648 27 1 -2.7165 -11.2310 5.0260 28 1 -1.7029 -10.1554 3.1034 29 6 1.2988 -6.3849 5.4912 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.6768 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 3.1301 1.4424 -0.0005 37 1 1.9330 -2.6769 0.5150 38 1 1.6854 -2.4716 2.2657 39 1 0.3946 -2.0220 1.1254 40 1 3.8579 -1.4672 0.5406 41 1 3.8711 0.2666 0.9431 42 1 5.8264 -1.2392 3.7100 43 1 5.8965 -1.7319 2.0014 44 1 5.8346 -0.0048 2.4274 45 1 3.4024 -3.0685 2.3370 46 1 2.4615 -3.6132 6.6310 47 1 3.1448 -5.5354 8.1942 48 1 2.5447 -7.8255 8.8578 49 1 1.1529 -9.2158 7.3891 50 1 -1.4002 -10.2645 7.2199 51 1 0.9493 -5.9793 4.5532 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000453751693.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:04:51 Heat of formation + Delta-G solvation = -52.436626 kcal Electronic energy + Delta-G solvation = -30692.776495 eV Core-core repulsion = 26591.655892 eV Total energy + Delta-G solvation = -4101.120603 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.06891 -40.54421 -39.38636 -38.83455 -36.86997 -36.17313 -34.84268 -32.89152 -32.22811 -31.77763 -30.27298 -29.20314 -27.29376 -26.79363 -26.35041 -25.15305 -23.18286 -22.70723 -21.92636 -21.34809 -20.86919 -19.91490 -19.12216 -18.06623 -17.41965 -17.26515 -17.21126 -16.67426 -16.61447 -16.45270 -16.07748 -15.75086 -15.36933 -15.22330 -14.81458 -14.68738 -14.57999 -14.04159 -13.94000 -13.81324 -13.54228 -13.40891 -13.21468 -13.10114 -13.03982 -12.96950 -12.87115 -12.85860 -12.68694 -12.52662 -12.37444 -12.18692 -12.04311 -11.90358 -11.83591 -11.53412 -11.47925 -11.17606 -10.89651 -10.59765 -10.19220 -9.41137 -9.28005 -8.87855 -8.59196 -6.38905 0.16478 0.93595 1.01949 1.32823 1.37863 1.50523 1.51703 2.12151 2.21599 2.61268 2.73966 2.83318 3.35571 3.70016 3.77410 3.94428 4.04553 4.11827 4.27065 4.35580 4.43455 4.44378 4.47270 4.58614 4.62651 4.64457 4.74814 4.80790 4.90085 4.91172 4.93960 4.96224 5.00818 5.07130 5.08269 5.12614 5.13853 5.24449 5.27596 5.30904 5.33363 5.40826 5.60337 5.77809 5.96227 6.04392 6.06051 6.09159 6.14528 6.27935 6.36741 6.64379 6.74416 6.89250 6.96042 7.01528 8.35538 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012117 B = 0.002523 C = 0.002181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2310.339179 B =11093.108748 C =12834.582750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.073 3.927 3 C -0.143 4.143 4 N -0.546 5.546 5 C 0.004 3.996 6 C 0.044 3.956 7 C 0.142 3.858 8 H 0.089 0.911 9 C -0.158 4.158 10 N -0.679 5.679 11 C 0.522 3.478 12 O -0.535 6.535 13 C 0.494 3.506 14 O -0.528 6.528 15 N -0.630 5.630 16 C 0.145 3.855 17 C -0.242 4.242 18 C -0.093 4.093 19 C -0.188 4.188 20 C 0.087 3.913 21 C -0.497 4.497 22 H 0.067 0.933 23 C 0.034 3.966 24 N -0.827 5.827 25 Si 0.984 3.016 26 H -0.260 1.260 27 H -0.265 1.265 28 H -0.263 1.263 29 C -0.224 4.224 30 H 0.054 0.946 31 H 0.073 0.927 32 H 0.050 0.950 33 H 0.043 0.957 34 H 0.071 0.929 35 H 0.056 0.944 36 H 0.067 0.933 37 H 0.032 0.968 38 H 0.063 0.937 39 H 0.070 0.930 40 H 0.051 0.949 41 H 0.119 0.881 42 H 0.047 0.953 43 H 0.067 0.933 44 H 0.095 0.905 45 H 0.414 0.586 46 H 0.424 0.576 47 H 0.129 0.871 48 H 0.125 0.875 49 H 0.109 0.891 50 H 0.288 0.712 51 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.743 18.508 -12.164 23.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.035 4.035 3 C -0.200 4.200 4 N -0.271 5.271 5 C -0.145 4.145 6 C -0.084 4.084 7 C 0.039 3.961 8 H 0.107 0.893 9 C -0.217 4.217 10 N -0.333 5.333 11 C 0.302 3.698 12 O -0.412 6.412 13 C 0.276 3.724 14 O -0.404 6.404 15 N -0.276 5.276 16 C 0.052 3.948 17 C -0.263 4.263 18 C -0.111 4.111 19 C -0.208 4.208 20 C 0.084 3.916 21 C -0.527 4.527 22 H 0.085 0.915 23 C -0.180 4.180 24 N -0.453 5.453 25 Si 0.805 3.195 26 H -0.185 1.185 27 H -0.189 1.189 28 H -0.187 1.187 29 C -0.245 4.245 30 H 0.073 0.927 31 H 0.092 0.908 32 H 0.069 0.931 33 H 0.061 0.939 34 H 0.090 0.910 35 H 0.075 0.925 36 H 0.086 0.914 37 H 0.051 0.949 38 H 0.082 0.918 39 H 0.088 0.912 40 H 0.069 0.931 41 H 0.136 0.864 42 H 0.066 0.934 43 H 0.086 0.914 44 H 0.113 0.887 45 H 0.253 0.747 46 H 0.262 0.738 47 H 0.147 0.853 48 H 0.143 0.857 49 H 0.127 0.873 50 H 0.099 0.901 51 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 7.474 18.717 -11.619 23.264 hybrid contribution -0.434 -1.324 -0.824 1.619 sum 7.040 17.393 -12.443 22.514 Atomic orbital electron populations 1.21937 0.94436 1.01798 1.02451 1.21706 0.95794 0.95734 0.90274 1.21899 1.01490 0.94113 1.02547 1.62019 1.08052 1.16947 1.40093 1.22839 1.01029 0.89108 1.01483 1.22626 0.87583 1.03810 0.94352 1.21347 0.95213 0.82215 0.97337 0.89290 1.22130 0.92968 1.04268 1.02293 1.46173 1.64101 1.15550 1.07465 1.19620 0.78885 0.86911 0.84358 1.90733 1.52989 1.48014 1.49508 1.20634 0.79058 0.89324 0.83409 1.90798 1.51360 1.49016 1.49205 1.43018 1.64952 1.10063 1.09602 1.17514 0.97343 0.84019 0.95892 1.20531 1.09869 0.97630 0.98253 1.20851 0.97565 0.93835 0.98876 1.21438 1.01819 1.00448 0.97061 1.17851 0.90081 0.90695 0.92995 1.19747 1.23037 1.15046 0.94822 0.91481 1.26706 0.95525 0.98775 0.96963 1.69838 1.31028 1.30670 1.13791 0.85179 0.78013 0.77720 0.78627 1.18495 1.18898 1.18724 1.21053 1.06405 0.95383 1.01667 0.92668 0.90780 0.93101 0.93936 0.90993 0.92465 0.91446 0.94935 0.91819 0.91167 0.93099 0.86356 0.93385 0.91359 0.88651 0.74729 0.73810 0.85300 0.85692 0.87263 0.90088 0.88868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 8.87 71.98 0.64 -1.58 16 2 C 0.07 1.04 2.68 44.91 0.12 1.16 16 3 C -0.14 -1.54 9.02 71.98 0.65 -0.89 16 4 N -0.55 -9.65 4.58 -897.05 -4.11 -13.75 16 5 C 0.00 0.08 8.29 127.69 1.06 1.14 16 6 C 0.04 0.61 4.60 86.30 0.40 1.01 16 7 C 0.14 2.52 2.92 44.99 0.13 2.65 16 8 H 0.09 1.92 7.37 -2.39 -0.02 1.91 16 9 C -0.16 -2.21 9.52 71.98 0.69 -1.53 16 10 N -0.68 -15.72 2.84 -443.96 -1.26 -16.98 16 11 C 0.52 15.64 7.49 87.24 0.65 16.29 16 12 O -0.54 -17.29 16.03 -3.27 -0.05 -17.34 16 13 C 0.49 18.08 7.71 87.24 0.67 18.75 16 14 O -0.53 -22.31 14.13 -3.33 -0.05 -22.36 16 15 N -0.63 -23.64 5.31 -304.98 -1.62 -25.26 16 16 C 0.14 6.58 6.22 38.16 0.24 6.82 16 17 C -0.24 -10.32 9.97 22.59 0.23 -10.10 16 18 C -0.09 -4.21 10.01 22.20 0.22 -3.99 16 19 C -0.19 -9.99 8.67 22.75 0.20 -9.79 16 20 C 0.09 4.89 5.56 -21.31 -0.12 4.77 16 21 C -0.50 -28.10 9.06 23.46 0.21 -27.88 16 22 H 0.07 3.77 7.87 -2.91 -0.02 3.75 16 23 C 0.03 1.78 5.24 85.25 0.45 2.23 16 24 N -0.83 -43.71 10.81 21.82 0.24 -43.48 16 25 Si 0.98 39.42 29.58 68.60 2.03 41.45 16 26 H -0.26 -10.03 7.11 99.48 0.71 -9.33 16 27 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 28 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 29 C -0.22 -11.82 8.41 22.86 0.19 -11.63 16 30 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.05 0.84 6.11 -2.39 -0.01 0.83 16 33 H 0.04 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.07 0.57 6.08 -2.38 -0.01 0.56 16 37 H 0.03 0.63 7.96 -2.39 -0.02 0.61 16 38 H 0.06 1.60 4.93 -2.39 -0.01 1.59 16 39 H 0.07 1.51 5.65 -2.39 -0.01 1.49 16 40 H 0.05 0.65 7.91 -2.39 -0.02 0.63 16 41 H 0.12 1.13 5.60 -2.39 -0.01 1.12 16 42 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 43 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 44 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 45 H 0.41 9.35 6.73 -92.71 -0.62 8.73 16 46 H 0.42 13.57 8.30 -92.71 -0.77 12.80 16 47 H 0.13 4.54 8.06 -2.91 -0.02 4.52 16 48 H 0.13 4.83 8.06 -2.91 -0.02 4.80 16 49 H 0.11 6.02 6.14 -2.91 -0.02 6.00 16 50 H 0.29 13.71 8.30 -92.71 -0.77 12.94 16 51 H 0.09 5.09 6.48 -2.91 -0.02 5.07 16 Total: -1.00 -66.48 405.53 1.37 -65.11 By element: Atomic # 1 Polarization: 45.62 SS G_CDS: -0.43 Total: 45.19 kcal Atomic # 6 Polarization: -19.20 SS G_CDS: 6.62 Total: -12.57 kcal Atomic # 7 Polarization: -92.73 SS G_CDS: -6.75 Total: -99.48 kcal Atomic # 8 Polarization: -39.60 SS G_CDS: -0.10 Total: -39.70 kcal Atomic # 14 Polarization: 39.42 SS G_CDS: 2.03 Total: 41.45 kcal Total: -66.48 1.37 -65.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453751693.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.672 kcal (2) G-P(sol) polarization free energy of solvation -66.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds